genome.fa.s6.2.7.7.80.10.50.1000.72.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  42799318

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  72  of  141  ( 16820 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20763924--20764007	39	2.2	39	82	8	100	61	3	1	33	1.20
20763945--20764007	19	3.3	19	95	2	108	61	4	0	33	1.17
20766706--20766749	17	2.7	16	86	6	61	79	2	9	9	1.02
20766712--20766747	17	2.1	17	94	0	63	83	0	8	8	0.82
20767580--20767645	30	2.2	31	91	2	107	39	25	13	21	1.90
20767611--20768359	44	16.9	44	77	5	643	29	22	17	30	1.97
20767611--20768285	89	7.6	89	81	7	712	29	23	16	30	1.97
20767611--20768359	266	2.8	265	86	6	977	29	22	17	30	1.97
20772905--20772939	16	2.2	16	89	0	52	5	2	5	85	0.81
20773427--20773477	3	16.0	3	77	18	50	29	1	5	62	1.29
20773439--20773477	16	2.5	15	88	12	53	30	0	5	64	1.15
20776626--20776683	29	2.0	30	93	3	100	13	6	22	56	1.61
20776626--20776698	30	2.4	29	84	4	74	13	5	23	57	1.57
20776639--20776720	37	2.2	38	84	6	105	13	6	24	56	1.60
20777227--20777487	96	2.7	96	99	0	513	23	9	24	42	1.83
20778041--20778149	13	8.2	13	82	4	128	36	4	4	54	1.42
20778030--20778149	27	4.5	26	81	4	105	37	4	5	53	1.42
20778042--20778149	40	2.7	40	91	0	171	37	4	4	53	1.42
20789200--20789428	116	2.0	116	92	0	386	20	9	19	51	1.74
20799472--20799555	30	2.7	31	96	1	152	33	45	9	11	1.73
20800443--20800484	3	14.0	3	100	0	84	33	0	0	66	0.92
20800721--20800752	15	2.1	15	94	0	55	18	3	3	75	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20815508--20815620	19	6.3	18	65	19	56	63	0	5	30	1.22
20815497--20815708	18	11.3	19	67	18	63	65	3	3	27	1.25
20815507--20815681	9	19.7	9	71	14	82	65	2	4	27	1.26
20815628--20815679	26	1.9	28	88	7	81	67	3	3	25	1.25
20816168--20816218	19	2.6	20	79	14	61	27	1	3	66	1.20
20816279--20816491	18	11.8	17	72	19	130	30	3	1	64	1.18
20816287--20816352	8	7.8	8	74	17	53	27	1	3	68	1.13
20816279--20816491	17	11.8	16	69	20	86	30	3	1	64	1.18
20816402--20816459	11	5.3	11	85	0	62	29	5	0	65	1.14
20816279--20816491	9	23.4	9	69	21	101	30	3	1	64	1.18
20816314--20816566	129	2.0	129	98	1	490	32	4	0	62	1.15
20816434--20816531	26	3.7	26	69	10	74	33	4	0	62	1.14
20817486--20817529	17	2.5	17	85	7	52	54	13	0	31	1.39
20820114--20820174	22	2.8	21	79	16	61	59	4	8	27	1.47
20821103--20821219	44	2.7	43	79	11	132	27	20	21	30	1.98
20822325--20823312	44	22.7	43	69	12	395	26	22	20	29	1.99
20822350--20823312	217	4.4	218	89	0	1464	26	22	20	29	1.99
20822350--20823312	435	2.2	434	94	1	1694	26	22	20	29	1.99
20834668--20834858	98	1.9	98	95	0	346	38	24	10	27	1.88
20835096--20835156	22	2.8	21	79	16	61	59	4	8	27	1.47
20837091--20837129	18	2.2	17	86	13	53	33	0	20	46	1.51
20837351--20837472	23	5.3	23	83	0	163	22	19	25	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20837351--20837472	46	2.7	46	92	0	190	22	19	25	32	1.97
20842050--20842087	20	1.9	19	94	0	58	50	7	23	15	1.70
20847293--20847344	24	2.2	24	89	0	77	55	9	1	32	1.43
20848085--20848141	29	1.9	30	85	3	80	36	8	0	54	1.32
20851971--20851995	11	2.3	11	100	0	50	48	8	24	20	1.76
20871503--20871546	18	2.8	17	77	22	51	6	11	4	77	1.11
20872386--20872489	52	2.0	52	84	0	136	43	4	16	35	1.69
20875594--20875653	31	2.0	31	90	3	95	38	10	16	35	1.82
20881751--20881794	23	1.9	23	95	0	79	36	38	0	25	1.56
20881766--20881796	16	1.9	16	93	0	53	35	38	0	25	1.56
20886401--20886427	11	2.5	11	100	0	54	29	0	0	70	0.88
20890087--20890111	5	5.0	5	100	0	50	0	20	0	80	0.72
20892156--20892201	22	2.1	21	84	4	56	17	4	19	58	1.55
20892187--20892270	23	3.7	23	88	0	132	20	7	28	44	1.78
20895470--20895503	17	2.0	17	94	0	59	44	5	0	50	1.26
20895470--20895508	17	2.4	16	87	8	53	43	5	0	51	1.24
20895474--20895513	17	2.3	18	83	12	57	47	5	0	47	1.24
20895506--20895836	66	5.4	63	66	22	211	42	2	6	48	1.42
20895560--20895736	54	3.1	51	65	25	129	44	2	5	48	1.37
20895589--20895623	18	2.0	17	88	5	52	45	0	0	54	0.99
20895469--20895880	120	3.4	120	93	3	690	43	2	5	49	1.39
20895829--20895863	18	2.0	17	88	5	52	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20896093--20896128	16	2.2	16	100	0	72	38	36	0	25	1.56
20902933--20902973	21	2.0	21	90	0	64	31	26	9	31	1.89
20903790--20903841	27	1.9	27	84	0	68	53	9	21	15	1.70
20907839--20907938	44	2.2	44	92	1	164	19	19	21	41	1.91
20907918--20907966	6	7.8	6	86	11	64	18	16	16	48	1.81
20910176--20910319	33	4.5	33	74	13	138	45	12	22	20	1.84
20910131--20910319	96	2.0	95	84	7	249	45	12	21	20	1.84
20914139--20914183	4	11.2	4	81	9	56	0	24	0	75	0.80
20919320--20919384	20	3.4	18	71	20	60	49	0	0	50	1.00
20919334--20919412	14	5.7	14	72	8	54	46	0	1	51	1.08
20919336--20919413	24	3.5	24	65	22	62	46	0	1	52	1.08
20919325--20919408	41	2.1	40	95	2	150	50	0	1	48	1.08
20925240--20925286	25	1.9	24	95	0	76	31	17	34	17	1.92
20925269--20925386	50	2.4	49	80	18	129	35	18	27	17	1.94
20928730--20928777	20	2.5	20	86	3	62	70	2	2	25	1.09
20928745--20928797	20	2.7	20	85	11	74	69	0	1	28	0.99
20928745--20928796	19	2.7	19	88	8	70	69	0	1	28	0.99
20929116--20929177	32	1.9	31	90	6	88	27	0	0	72	0.85
20929141--20929181	20	2.1	19	90	4	64	31	0	0	68	0.90
20929130--20929177	6	7.7	6	81	9	60	22	0	0	77	0.78
20929130--20929177	13	3.8	12	81	8	60	22	0	0	77	0.78
20930760--20931138	125	3.0	125	91	1	589	30	15	21	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20934225--20934292	17	3.8	17	71	16	57	48	1	5	44	1.36
20934360--20934843	23	21.8	23	81	10	535	26	0	26	47	1.54
20934360--20934847	44	11.0	44	86	5	573	26	0	26	47	1.54
20934360--20934843	67	7.3	67	86	5	544	26	0	26	47	1.54
20934904--20934951	25	1.9	25	100	0	96	39	14	0	45	1.45
20935992--20936016	7	3.6	7	100	0	50	60	12	0	28	1.32
20937756--20937846	45	2.0	45	97	0	173	37	13	7	41	1.73
20943304--20943365	28	2.2	28	85	5	81	24	11	14	50	1.75
20943425--20943659	126	1.9	125	91	0	389	34	20	14	31	1.92
20945453--20945989	295	1.8	290	82	7	681	27	13	17	42	1.86
20955820--20955907	45	2.0	45	88	4	133	40	5	5	47	1.51
20960372--20960401	15	1.9	16	93	6	53	73	6	0	20	1.05
20960683--20960744	30	2.1	30	90	0	97	19	37	0	43	1.51
20961900--20961964	27	2.4	28	73	14	64	38	9	3	49	1.51
20968175--20968217	20	2.0	22	86	8	63	30	0	6	62	1.21
20968464--20968526	31	2.1	31	81	3	74	31	1	4	61	1.26
20968651--20968697	15	3.1	15	81	0	58	55	4	12	27	1.56
20971639--20971685	24	2.0	24	86	0	67	23	19	19	38	1.93
20971972--20972002	15	2.0	16	93	6	55	41	12	0	45	1.42
20973671--20973702	16	2.0	16	93	0	55	25	15	0	59	1.36
20973930--20974120	51	3.8	50	78	11	219	30	28	16	24	1.96
20973923--20974108	102	1.8	102	89	3	277	31	27	16	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20978494--20978525	16	2.0	16	93	0	55	25	15	0	59	1.36
20978814--20978928	37	3.2	37	63	18	98	30	29	11	27	1.91
20978823--20978939	39	3.2	39	63	18	106	29	31	11	26	1.92
20978804--20978942	70	2.0	69	97	0	251	29	29	13	26	1.94
20996288--20996345	14	4.1	14	80	14	66	67	0	32	0	0.91
20996297--20996341	20	2.2	20	88	11	65	68	0	31	0	0.89
20996274--20996350	31	2.5	30	84	14	95	70	0	29	0	0.88
20996285--20996345	17	3.8	16	79	16	63	67	0	32	0	0.91
20996500--20996697	61	3.2	60	72	20	185	32	0	12	55	1.41
20996506--20996739	83	2.8	83	73	15	228	31	0	11	55	1.39

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141