genome.fa.s6.2.7.7.80.10.50.1000.23.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  42799318

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  23  of  141  ( 16820 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7116561--7116591	16	1.9	16	100	0	62	41	6	0	51	1.27
7122163--7122234	36	2.0	35	81	2	81	31	9	25	33	1.88
7123243--7123661	206	2.0	206	98	0	811	37	11	19	32	1.87
7124975--7125014	19	2.1	19	85	0	53	60	10	2	27	1.42
7126842--7126875	16	2.1	16	88	0	50	44	2	11	41	1.56
7127049--7127077	14	2.1	14	100	0	58	27	20	10	41	1.85
7130140--7130195	29	1.9	28	82	13	69	57	1	3	37	1.27
7130220--7130264	17	2.6	17	89	6	65	44	0	6	48	1.29
7130594--7130627	16	2.0	18	88	11	54	64	0	0	35	0.94
7130680--7130713	17	2.0	17	88	0	50	50	0	2	47	1.16
7139510--7139561	26	2.0	26	92	0	86	53	5	7	32	1.53
7142279--7142325	22	2.1	22	96	0	85	29	25	12	31	1.93
7151791--7151836	21	2.2	21	84	3	58	32	4	8	54	1.51
7152390--7152418	2	14.5	2	100	0	58	48	0	0	51	1.00
7154076--7154120	13	3.5	13	75	0	54	37	13	31	17	1.89
7154067--7154126	26	2.3	26	97	0	111	36	15	33	15	1.88
7159846--7159873	13	2.2	13	100	0	56	39	14	21	25	1.91
7163327--7163765	221	2.0	221	88	1	657	40	19	13	26	1.89
7166680--7167131	226	2.0	226	99	0	895	33	13	7	45	1.72
7176580--7176604	13	1.9	13	100	0	50	68	0	16	16	1.22
7181450--7181483	10	3.3	10	84	8	50	8	5	11	73	1.24
7181448--7181490	11	4.0	10	82	11	50	9	4	11	74	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7204493--7204538	23	2.0	23	83	4	58	30	45	4	19	1.70
7204985--7205031	24	2.0	24	82	0	58	29	2	12	55	1.49
7211385--7211418	16	2.0	18	88	11	54	26	5	2	64	1.30
7219351--7219432	41	2.0	41	97	0	155	29	6	15	48	1.69
7222574--7222624	24	2.1	24	92	0	84	29	17	27	25	1.98
7223179--7223216	19	2.0	19	94	0	67	34	5	18	42	1.73
7223254--7223336	41	2.0	41	88	4	123	30	6	12	51	1.62
7237118--7237156	19	2.0	19	90	5	60	66	5	0	28	1.12
7237118--7237171	18	2.8	19	86	5	65	66	3	1	27	1.19
7237118--7237172	19	2.8	19	81	13	51	67	3	1	27	1.17
7237171--7237228	8	7.1	8	83	9	64	67	1	0	31	1.01
7237813--7238012	43	4.6	42	83	1	175	26	30	17	27	1.97
7237786--7238012	86	2.6	85	83	2	240	25	29	17	26	1.98
7241951--7242001	24	2.1	24	96	0	93	47	1	3	47	1.32
7242198--7242232	18	1.9	18	88	0	52	48	20	0	31	1.50
7242426--7242456	7	4.4	7	91	0	53	32	48	0	19	1.49
7242408--7242480	21	3.4	21	82	1	83	34	43	0	21	1.53
7242383--7242492	35	3.2	33	76	12	105	36	40	1	21	1.64
7242747--7242794	22	2.2	22	85	14	64	33	39	0	27	1.57
7242790--7242854	21	3.1	21	78	8	69	36	36	0	26	1.57
7242824--7242857	7	4.7	7	85	7	50	41	32	0	26	1.56
7242824--7242866	15	2.9	15	86	3	61	39	34	0	25	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7243077--7243131	25	2.2	25	75	12	60	21	9	7	61	1.50
7243215--7243488	41	6.8	41	80	5	261	31	26	17	24	1.97
7243558--7243662	40	2.7	40	79	10	119	21	20	21	35	1.96
7243588--7243676	40	2.2	39	77	15	92	22	23	23	30	1.99
7248389--7248880	50	9.8	50	77	6	408	23	27	21	27	1.99
7248322--7248808	244	2.0	244	95	0	884	23	26	20	28	1.99
7253450--7253505	6	9.3	6	77	14	62	16	1	3	78	0.97
7253445--7253488	17	2.7	16	82	10	54	20	0	4	75	0.98
7253446--7253488	23	1.9	22	90	4	68	20	0	2	76	0.89
7267200--7267232	14	2.4	14	94	0	57	69	3	21	6	1.24
7274352--7274397	17	2.6	17	83	10	58	60	6	21	10	1.52
7281117--7281223	50	2.1	50	80	0	124	19	31	21	27	1.97
7282138--7282328	41	4.6	41	90	0	301	25	27	19	27	1.99
7289771--7289961	41	4.6	41	91	0	310	24	26	19	29	1.99
7296261--7296318	24	2.4	24	88	0	80	44	3	17	34	1.65
7298566--7298613	9	4.9	9	80	14	51	54	16	0	29	1.43
7309703--7309757	16	3.5	15	81	13	58	52	0	0	47	1.00
7309703--7309758	17	3.6	16	79	9	62	51	0	0	48	1.00
7310609--7310650	22	1.9	22	95	0	75	47	4	2	45	1.36
7318243--7318571	162	2.0	162	97	0	622	35	10	20	33	1.88
7318793--7318842	23	2.2	23	96	0	91	54	10	0	36	1.34
7321839--7321908	36	1.9	36	97	0	131	44	8	10	37	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7322846--7322872	14	1.9	14	100	0	54	55	14	0	29	1.40
7328874--7328910	17	2.1	18	85	14	51	70	2	2	24	1.14
7343046--7343107	23	2.5	24	87	7	81	51	19	9	19	1.74
7344468--7345109	322	2.0	321	93	0	1086	43	8	26	21	1.81
7345557--7345603	24	1.9	25	91	4	78	46	4	6	42	1.48
7348458--7348505	21	2.3	21	88	0	69	25	31	6	37	1.81
7366324--7366377	25	2.2	25	100	0	108	42	3	16	37	1.66
7374944--7374974	15	2.1	15	93	0	53	38	3	32	25	1.72
7375036--7375074	18	2.3	17	86	8	53	38	5	12	43	1.65
7375428--7375583	79	2.0	79	96	0	285	27	22	28	21	1.99
7379274--7379304	15	2.1	15	93	0	53	38	3	32	25	1.72
7380978--7381110	57	2.3	57	89	0	194	27	10	15	46	1.79
7380978--7381126	57	2.6	57	86	2	165	26	10	17	45	1.80
7383042--7383163	20	6.1	20	73	7	95	40	22	28	9	1.84
7397017--7397089	17	4.3	17	73	0	65	28	28	27	15	1.96
7408081--7408133	3	17.7	3	92	0	88	0	28	0	71	0.86
7414333--7414393	19	3.2	19	72	9	52	29	31	24	14	1.95
7417857--7417883	5	5.4	5	100	0	54	40	18	0	40	1.51
7420619--7420808	60	3.2	59	79	5	168	28	24	15	31	1.95
7425338--7425370	17	2.1	16	88	11	50	63	3	0	33	1.10
7445520--7445709	50	3.7	50	83	4	227	22	28	22	26	1.99
7445520--7445706	100	1.8	104	85	6	265	22	28	22	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7445478--7445709	50	4.5	50	82	3	205	23	27	21	27	1.99
7453023--7453261	50	4.7	50	81	5	241	23	28	21	27	1.99
7453468--7454921	726	2.0	726	100	0	2908	31	19	10	38	1.86
7456407--7456456	19	2.5	20	81	12	59	58	30	4	8	1.45
7456718--7456791	5	14.8	5	81	5	87	36	21	5	36	1.77
7458909--7459419	254	2.0	254	99	0	1013	23	11	20	44	1.84
7468362--7468419	21	2.8	21	84	5	64	65	1	1	31	1.13
7469767--7470097	165	2.0	165	100	0	662	44	12	15	27	1.82
7475744--7475792	24	2.1	22	81	7	53	44	16	10	28	1.80
7482261--7482425	75	2.2	75	95	2	298	48	10	9	31	1.69
7482483--7482533	17	2.9	18	83	13	63	52	0	0	47	1.00
7482481--7482524	17	2.8	17	86	13	67	50	0	0	50	1.00
7482744--7482847	29	3.6	27	89	6	145	41	10	0	48	1.38
7482913--7483006	27	3.5	27	91	0	143	26	27	27	18	1.98
7483036--7483084	24	2.0	25	92	4	82	67	6	16	10	1.39
7483038--7483093	26	2.2	24	84	6	67	69	3	19	7	1.27
7483145--7483183	19	2.0	21	85	10	55	25	0	7	66	1.18
7483259--7483296	3	12.7	3	100	0	76	0	0	31	68	0.90
7485477--7485506	13	2.3	13	100	0	60	50	16	10	23	1.75
7487630--7487667	19	2.0	19	85	10	51	60	7	0	31	1.25
7487686--7487805	35	3.1	37	74	20	111	0	33	0	66	0.92
7487702--7487794	21	4.3	23	69	20	74	0	30	0	69	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7487687--7487862	40	4.2	44	80	11	153	0	35	0	64	0.94
7487731--7487864	18	6.6	20	75	22	104	0	34	0	65	0.93
7487705--7487864	39	4.0	39	75	20	152	0	33	0	66	0.92
7487669--7487870	9	21.1	9	70	22	94	0	33	0	66	0.92
7487700--7487866	22	7.3	22	71	23	89	0	32	0	67	0.91
7488021--7488096	29	2.7	29	91	6	120	44	0	10	44	1.38
7491559--7491706	49	2.7	60	75	23	196	31	10	30	27	1.91
7491600--7491785	47	3.9	47	89	1	255	31	9	31	26	1.89
7491904--7491982	37	2.1	37	90	0	122	24	18	31	25	1.98
7495000--7495046	19	2.5	20	79	10	62	70	2	2	25	1.10

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141