genome.fa.s6.2.7.7.80.10.50.1000.59.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  42799318

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  59  of  141  ( 16820 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17585397--17585448	24	2.2	24	89	0	77	55	9	1	32	1.43
17587368--17587419	24	2.2	24	89	0	77	55	9	1	32	1.43
17588056--17588088	16	2.1	16	100	0	66	36	30	27	6	1.81
17592618--17592684	20	3.3	20	93	0	98	38	11	0	49	1.40
17602971--17603011	19	2.2	18	87	12	57	0	7	12	80	0.90
17603379--17603408	14	2.1	14	93	0	51	26	20	16	36	1.93
17608775--17608826	3	17.0	3	88	4	68	40	0	0	59	0.97
17614101--17614206	43	2.5	43	81	4	115	26	29	17	26	1.98
17620492--17620777	67	4.3	67	77	5	258	23	25	17	33	1.96
17625666--17625691	11	2.4	11	100	0	52	46	0	0	53	1.00
17631257--17631318	32	1.9	33	93	3	108	29	1	22	46	1.61
17632137--17632182	21	2.2	21	88	0	65	32	17	28	21	1.96
17633940--17634173	78	3.0	78	98	0	450	52	11	11	25	1.70
17637699--17637849	33	4.5	33	72	18	116	31	27	20	19	1.97
17637648--17637824	75	2.3	75	90	0	264	29	27	19	23	1.98
17637770--17637851	27	2.7	31	83	10	100	31	29	21	17	1.96
17654045--17654108	31	2.1	31	100	0	128	51	29	3	15	1.59
17654812--17654868	28	2.0	28	93	0	96	47	10	21	21	1.80
17660441--17660511	21	3.4	21	70	14	56	47	18	18	15	1.82
17663434--17663458	2	12.5	2	100	0	50	0	0	52	48	1.00
17664780--17664921	51	2.8	51	81	0	149	35	11	26	26	1.90
17664837--17664936	51	2.0	51	81	0	119	35	14	28	23	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17667773--17667816	23	2.0	22	82	8	54	34	0	25	40	1.56
17667871--17667923	23	2.3	23	81	15	58	28	3	24	43	1.71
17667704--17667967	138	1.9	138	94	1	467	32	3	22	41	1.72
17669652--17669734	23	3.6	25	71	24	65	42	1	1	55	1.15
17669629--17669722	20	4.4	19	75	20	71	39	1	2	57	1.18
17669692--17669802	58	1.9	57	89	5	170	43	0	1	54	1.17
17669961--17670015	16	3.4	16	87	0	83	30	25	5	38	1.79
17677724--17677757	14	2.4	14	85	0	50	67	5	2	23	1.26
17680976--17681005	11	2.6	11	94	5	51	36	0	6	56	1.26
17688564--17688612	20	2.5	19	76	3	53	30	16	22	30	1.96
17691273--17691301	6	4.8	6	100	0	58	17	0	17	65	1.27
17694504--17694760	84	3.1	84	98	0	496	31	25	7	35	1.84
17700711--17700745	3	11.7	3	100	0	70	68	0	0	31	0.90
17702610--17702686	14	5.0	15	71	20	52	42	14	9	33	1.77
17702626--17702665	20	2.0	20	90	0	62	50	12	10	27	1.72
17702614--17702680	34	1.9	35	90	3	109	46	13	8	31	1.74
17713873--17713938	31	2.1	31	88	5	98	33	10	9	46	1.70
17715472--17715518	22	2.1	22	84	0	58	53	10	17	19	1.72
17743026--17743050	7	3.6	7	100	0	50	24	0	76	0	0.80
17745892--17745937	21	2.2	21	100	0	92	69	0	13	17	1.19
17746259--17746316	29	2.0	29	100	0	116	37	10	17	34	1.84
17747293--17747696	112	3.7	110	86	4	571	32	19	17	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17747293--17747696	109	3.7	109	86	4	560	32	19	17	30	1.95
17749657--17749703	24	2.0	22	84	8	58	44	4	6	44	1.49
17750923--17750979	28	2.0	28	93	0	96	33	10	15	40	1.82
17752109--17752158	25	2.0	25	100	0	100	16	40	24	20	1.91
17757950--17758071	60	2.0	60	88	3	183	31	1	12	54	1.47
17758191--17758225	16	2.3	15	90	5	52	34	2	5	57	1.37
17759891--17760173	90	3.1	90	98	0	548	49	5	14	30	1.66
17785690--17785772	25	3.3	25	76	6	71	24	21	24	30	1.99
17796099--17796171	36	2.1	35	86	2	101	31	17	28	20	1.95
17809041--17809217	25	7.1	25	69	17	77	35	18	27	18	1.95
17809103--17809173	25	2.8	25	78	0	79	32	16	30	19	1.95
17809163--17809217	24	2.2	24	84	9	67	38	20	27	14	1.91
17817026--17817073	25	1.9	25	82	0	60	35	16	29	18	1.93
17832645--17832816	80	2.2	79	81	7	188	26	20	26	26	1.99
17832641--17832783	40	3.6	40	82	9	175	24	21	27	25	1.99
17835711--17835776	19	3.4	18	70	13	60	16	31	18	33	1.93
17835706--17835780	39	1.9	39	94	0	132	18	30	17	33	1.94
17835713--17835794	39	2.1	39	88	0	119	18	30	17	34	1.94
17839524--17839586	28	2.1	28	82	8	72	42	4	20	31	1.73
17840055--17840439	51	7.6	50	78	4	387	29	14	26	29	1.95
17840055--17840437	102	3.8	102	92	0	579	28	14	26	29	1.95
17840206--17840482	152	1.8	153	81	3	344	30	14	25	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17845908--17845941	12	2.8	12	90	0	50	23	41	23	11	1.87
17845926--17846033	42	2.6	42	86	0	144	24	26	30	18	1.98
17851971--17852035	24	2.7	24	79	11	62	53	6	1	38	1.35
17856396--17856446	25	2.0	26	84	3	68	39	9	11	39	1.75
17857030--17857067	19	2.0	19	100	0	76	31	10	31	26	1.90
17858222--17858392	41	4.2	41	84	3	211	30	19	23	25	1.98
17858237--17858393	82	1.9	82	88	0	233	28	19	24	27	1.99
17859403--17859771	116	3.2	114	75	10	343	32	15	18	33	1.93
17859906--17859962	25	2.4	22	80	13	60	19	42	1	36	1.62
17859937--17859976	15	2.8	14	85	7	53	25	35	2	37	1.69
17860598--17860665	33	2.1	33	94	0	118	32	4	27	35	1.77
17860907--17860942	17	2.1	17	94	0	63	11	38	11	38	1.76
17861370--17861422	24	2.2	24	96	0	97	43	3	3	49	1.38
17862633--17862665	13	2.5	13	95	0	57	57	0	9	33	1.30
17862747--17862816	9	8.0	9	82	9	74	47	18	0	34	1.49
17868771--17868986	43	5.0	43	83	5	269	23	17	29	29	1.97
17872151--17872185	17	2.2	15	90	10	52	65	5	0	28	1.15
17872151--17872186	16	2.2	17	90	5	56	66	5	0	27	1.13
17872136--17872303	83	2.0	83	97	0	318	43	11	6	38	1.67
17872234--17872268	17	2.2	15	90	10	52	65	2	0	31	1.07
17872234--17872269	16	2.2	17	90	5	56	66	2	0	30	1.06
17874844--17874913	25	2.8	26	80	6	90	21	22	27	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17882574--17882668	25	3.8	25	76	15	106	23	20	26	30	1.98
17888090--17888131	18	2.3	18	87	0	57	78	7	2	11	1.04
17888440--17888481	15	2.9	15	82	10	52	52	0	0	47	1.00
17888479--17888666	61	3.1	61	68	11	179	48	7	2	42	1.43
17888569--17888604	18	2.1	18	89	5	56	61	0	0	38	0.96
17888469--17888652	59	3.1	59	66	22	157	48	7	1	42	1.40
17888527--17888715	66	3.2	58	67	19	163	50	4	2	42	1.35
17888431--17888726	120	2.5	120	94	1	522	49	5	2	43	1.36
17888708--17889039	47	7.3	46	69	20	198	47	3	3	46	1.35
17888742--17889039	91	3.3	91	97	0	551	46	3	3	46	1.36
17892139--17892168	6	5.0	6	100	0	60	50	0	0	50	1.00
17892950--17892974	13	1.9	13	100	0	50	20	16	8	56	1.65
17895894--17895969	34	2.3	34	88	2	109	43	0	19	36	1.52
17895910--17895978	29	2.2	32	87	12	99	43	0	21	34	1.53
17899422--17900355	59	15.8	59	97	0	1678	54	9	5	31	1.55
17902241--17902302	31	2.0	31	87	6	90	67	1	1	29	1.09
17903055--17903110	26	2.2	24	87	6	76	35	1	5	57	1.32
17903064--17903122	26	2.3	25	80	8	64	37	3	5	54	1.39
17905437--17905498	31	2.0	31	90	6	99	29	3	1	66	1.17
17905480--17905633	76	2.0	78	88	2	231	35	7	10	46	1.67
17907494--17907673	59	3.1	59	96	1	326	34	4	6	54	1.47
17912385--17912520	69	2.0	70	88	1	202	37	24	6	31	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17916280--17916322	16	2.6	16	82	14	52	55	0	2	41	1.12
17916277--17916321	21	2.1	22	84	12	58	60	0	2	37	1.09
17919378--17919513	25	5.5	24	78	11	132	32	20	23	23	1.98
17919362--17919522	49	3.3	48	86	5	214	32	20	23	23	1.98
17926377--17927178	3	267.3	3	100	0	1604	33	0	0	66	0.92
17927971--17928002	3	10.7	3	93	0	55	62	0	3	34	1.11
17935722--17935770	25	2.0	25	87	0	71	26	22	18	32	1.97
17938083--17938117	16	2.2	16	89	0	52	51	5	0	42	1.25
17943045--17943187	47	3.0	48	82	5	168	41	16	13	27	1.86
17943046--17943171	23	5.5	22	72	15	85	41	16	15	26	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141