genome.fa.s6.2.7.7.80.10.50.1000.34.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  42799318

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  34  of  141  ( 16820 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10249493--10249664	25	6.9	25	80	5	177	19	26	17	37	1.93
10249512--10249664	50	3.1	50	86	0	207	19	25	17	37	1.94
10249495--10249659	75	2.2	75	82	7	201	18	26	17	37	1.93
10249545--10249684	25	5.6	25	79	8	79	17	25	18	37	1.93
10249551--10249697	75	2.0	75	82	5	181	19	23	19	37	1.94
10255673--10255809	50	2.7	50	84	4	177	19	26	18	35	1.95
10255673--10255817	25	5.8	25	77	8	143	19	26	17	36	1.94
10255704--10255843	75	1.9	75	81	3	174	20	25	17	35	1.95
10255860--10255915	25	2.2	25	81	6	69	19	21	25	33	1.97
10260892--10260924	9	3.7	9	91	0	57	51	18	6	24	1.68
10264927--10264972	20	2.3	20	92	0	74	19	2	13	65	1.37
10267635--10267664	6	5.0	6	100	0	60	83	0	0	16	0.65
10270630--10270662	17	1.9	17	88	11	50	45	33	0	21	1.52
10271068--10271159	41	2.2	42	92	5	161	43	23	10	21	1.84
10272298--10272621	97	3.4	95	90	3	499	41	2	17	39	1.62
10272291--10272655	97	3.8	95	86	5	461	40	1	17	40	1.60
10272654--10272945	126	2.3	126	88	1	451	34	18	19	27	1.96
10277057--10277088	7	4.7	7	92	7	57	59	12	0	28	1.34
10277057--10277088	13	2.4	14	89	10	57	59	12	0	28	1.34
10282507--10282544	18	2.0	20	85	10	53	5	28	5	60	1.40
10292184--10292208	13	1.9	13	100	0	50	64	8	8	20	1.46
10293966--10294107	50	2.8	50	85	1	185	24	21	30	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10302757--10303331	286	2.0	286	98	0	1105	39	8	17	33	1.81
10310250--10310292	22	2.0	22	100	0	86	4	13	30	51	1.62
10319698--10319737	20	2.0	20	90	0	62	10	12	62	15	1.54
10326709--10326753	19	2.4	18	82	13	56	46	17	6	28	1.73
10326846--10326904	19	3.1	19	86	11	77	44	18	5	32	1.72
10326854--10326959	20	5.3	20	80	2	115	45	17	6	30	1.74
10326854--10326933	39	2.0	40	87	2	117	47	20	5	27	1.70
10331465--10331521	23	2.5	23	97	0	105	35	0	21	43	1.52
10332462--10332494	13	2.6	13	90	4	50	24	9	0	66	1.20
10334316--10334348	13	2.6	13	85	4	50	27	6	18	48	1.71
10335406--10335492	30	2.9	30	86	6	122	26	4	14	54	1.60
10336763--10336791	10	2.7	11	89	10	51	58	13	0	27	1.36
10336875--10336931	30	1.9	30	88	0	87	33	22	17	26	1.96
10342281--10342324	19	2.5	17	81	7	52	9	27	47	15	1.76
10346189--10346257	20	3.6	19	80	9	61	43	5	10	40	1.62
10346203--10346252	20	2.5	21	87	6	68	44	6	10	40	1.63
10349378--10349621	30	8.1	30	98	0	461	27	24	6	42	1.79
10354245--10354338	30	3.1	30	89	1	134	25	23	7	43	1.79
10354242--10354332	15	6.1	15	69	11	53	27	21	7	42	1.80
10355418--10355601	57	3.2	57	89	0	278	43	14	17	25	1.86
10362595--10362639	22	2.0	22	87	8	65	26	48	6	17	1.72
10368161--10368329	57	3.0	57	91	0	275	44	13	19	21	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10368542--10368581	15	2.4	16	88	12	55	35	7	7	50	1.59
10375668--10375733	33	2.0	33	84	0	87	30	21	22	25	1.99
10376073--10376387	27	11.7	27	83	4	273	18	17	20	43	1.88
10376112--10376161	26	1.9	26	88	8	75	22	8	16	54	1.68
10380876--10381010	43	3.1	43	97	0	252	17	31	8	42	1.79
10386830--10386881	25	2.2	23	83	10	61	30	1	1	65	1.14
10387306--10387347	13	3.2	13	80	16	50	21	0	4	73	1.01
10387618--10387719	44	2.3	44	82	0	123	42	23	3	30	1.72
10394285--10394319	5	7.0	5	100	0	70	40	0	0	60	0.97
10394461--10394493	17	1.9	17	100	0	66	78	0	12	9	0.95
10395642--10395744	45	2.3	46	91	1	163	20	16	20	42	1.89
10396852--10396902	17	3.0	17	94	0	84	33	15	19	31	1.93
10411638--10411663	13	2.0	13	100	0	52	23	7	23	46	1.78
10411730--10411864	70	2.0	69	92	5	204	45	14	11	28	1.79
10413685--10413719	17	2.1	16	89	5	52	60	2	0	37	1.12
10418950--10418997	14	3.4	13	78	18	51	31	2	0	66	1.03
10421022--10421114	24	3.9	24	73	5	80	44	20	6	29	1.76
10421174--10421302	27	4.8	26	83	6	152	24	22	20	32	1.98
10421174--10421302	54	2.4	54	87	3	172	24	22	20	32	1.98
10428106--10428148	21	2.0	21	81	0	50	58	6	0	34	1.25
10428236--10428296	24	2.5	23	80	15	61	49	4	0	45	1.23
10428244--10428323	35	2.3	35	85	8	103	50	5	0	45	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10429494--10429544	20	2.6	19	81	9	57	43	9	13	33	1.77
10429688--10429733	19	2.3	21	85	7	60	47	8	13	30	1.72
10431370--10431445	26	2.9	26	78	7	91	28	17	11	42	1.84
10433247--10433306	28	2.1	29	90	3	95	28	23	23	25	2.00
10433412--10433488	26	3.0	26	80	0	91	37	16	22	23	1.94
10433654--10433795	27	5.3	27	86	1	178	19	18	21	41	1.90
10450804--10450847	22	2.0	22	90	0	70	36	4	13	45	1.64
10457601--10457707	41	2.6	41	90	0	160	37	22	18	21	1.94
10457823--10458071	64	3.8	64	78	6	229	41	16	8	33	1.78
10461458--10461522	30	2.2	29	83	10	78	36	0	0	63	0.95
10462398--10462431	3	11.0	3	87	6	50	67	0	29	2	1.05
10465769--10466340	77	7.4	77	94	0	991	41	6	9	41	1.65
10467100--10467625	259	2.0	259	97	0	989	30	22	18	28	1.97
10468208--10468518	77	4.0	77	98	0	595	40	8	9	41	1.69
10469278--10469803	259	2.0	259	98	0	1016	30	23	18	28	1.97
10470469--10471200	153	4.8	153	84	7	888	30	11	6	52	1.62
10470470--10471200	307	2.4	305	88	5	1084	30	10	6	52	1.62
10471487--10471563	33	2.3	33	100	0	154	28	23	23	24	1.99
10471531--10471749	43	5.1	43	81	4	230	30	25	18	26	1.98
10476574--10476627	21	2.5	22	79	8	67	29	40	0	29	1.57
10476581--10476627	14	3.4	14	74	11	51	29	42	0	27	1.56
10476726--10476793	34	2.0	34	82	0	82	35	39	0	25	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10476750--10476793	20	2.2	20	88	12	63	36	45	0	18	1.49
10476783--10476913	62	2.1	63	83	7	160	45	25	1	28	1.63
10477401--10477599	41	4.9	41	89	0	299	31	22	21	25	1.98
10477629--10477764	40	3.4	40	81	2	148	19	20	21	38	1.93
10478003--10478064	24	2.6	24	94	0	106	0	35	0	64	0.94
10486918--10487054	50	2.7	50	83	4	161	27	23	28	21	1.99
10487303--10487341	12	3.2	12	85	0	51	51	5	23	20	1.67
10509372--10509412	21	2.0	21	85	0	55	21	21	12	43	1.85
10509920--10509950	9	3.4	9	90	0	53	25	12	22	38	1.90
10510004--10510040	9	4.1	9	92	0	65	45	13	10	29	1.77
10510254--10510303	26	1.9	26	83	0	64	22	30	0	48	1.51
10514457--10514493	19	1.9	19	88	0	56	29	0	2	67	1.04
10518654--10518679	12	2.2	12	100	0	52	34	0	42	23	1.54
10521328--10521452	53	2.4	50	90	7	198	28	8	41	21	1.81
10521420--10521445	12	2.2	12	100	0	52	34	0	42	23	1.54
10522417--10522451	18	2.0	17	88	5	52	45	0	0	54	0.99
10522616--10522706	45	2.0	45	85	2	121	37	28	6	27	1.82
10522687--10522755	16	4.2	16	92	3	120	36	37	1	24	1.65
10522687--10522755	33	2.1	32	94	2	120	36	37	1	24	1.65
10533318--10533355	18	2.1	18	95	0	67	44	13	23	18	1.85
10533479--10533553	23	3.3	23	92	0	114	37	0	13	49	1.42
10533488--10533553	13	5.5	13	71	20	63	37	0	13	48	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10538607--10538748	71	2.0	72	95	1	259	35	19	17	27	1.94
10539104--10539206	45	2.3	44	83	3	125	54	1	6	36	1.38
10539188--10539231	24	1.9	23	81	9	54	59	2	4	34	1.30
10539142--10539236	45	2.1	45	80	7	102	53	1	6	38	1.33
10542101--10542147	23	2.0	23	91	0	76	25	21	0	53	1.46
10542183--10542233	23	2.2	23	92	0	84	27	9	21	41	1.84
10543366--10543455	44	2.0	44	81	8	103	30	21	18	30	1.97
10550341--10550484	50	2.9	50	82	0	171	22	28	20	28	1.99
10557012--10557308	50	5.8	50	79	3	265	23	27	20	28	1.99
10565210--10565352	72	2.0	72	94	0	250	34	17	20	27	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141