genome.fa.s6.2.7.7.80.10.50.1000.108.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  42799318

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  108  of  141  ( 16820 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31013343--31013374	13	2.5	13	100	0	64	18	6	9	65	1.42
31017365--31017402	20	1.9	20	89	10	60	34	2	18	44	1.64
31017768--31017836	16	4.2	16	71	15	61	40	2	1	55	1.24
31051703--31051742	15	2.7	15	92	0	62	25	12	17	45	1.83
31051914--31052035	47	2.6	47	84	2	167	21	20	23	34	1.97
31055002--31055915	40	22.9	40	98	0	1717	25	23	20	31	1.98
31062427--31062463	16	2.4	15	95	4	65	18	10	5	64	1.43
31062502--31062560	12	5.0	12	87	4	93	16	3	6	72	1.20
31062502--31062556	23	2.3	23	90	3	83	14	3	5	76	1.10
31069484--31069515	15	2.1	15	94	0	55	21	3	6	68	1.26
31077398--31077499	36	2.8	36	75	16	111	48	1	12	37	1.53
31079912--31079951	19	2.1	19	95	0	71	35	20	20	25	1.96
31085509--31085971	49	9.6	49	96	1	848	30	28	7	32	1.86
31088741--31088837	25	3.8	26	83	8	119	26	26	22	23	2.00
31089913--31089951	20	2.0	20	85	10	53	15	5	28	51	1.64
31090668--31090697	12	2.5	12	94	0	51	33	33	30	3	1.74
31091101--31091241	75	1.9	75	89	0	219	44	9	14	31	1.77
31091316--31091350	17	2.1	17	89	10	54	40	0	0	60	0.97
31091442--31091527	44	2.0	44	88	4	129	38	8	8	45	1.64
31111874--31111915	21	2.0	22	85	4	59	50	11	0	38	1.40
31115894--31115995	28	3.7	27	80	8	107	28	20	12	38	1.89
31122052--31122091	16	2.6	15	84	4	53	50	0	2	47	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31128220--31128268	19	2.6	18	84	12	55	32	6	4	57	1.42
31129948--31130024	39	2.0	39	84	0	100	36	14	18	31	1.90
31130054--31130239	93	2.0	93	100	0	372	18	4	26	50	1.65
31130083--31130229	45	3.2	45	65	16	129	20	2	26	50	1.62
31135222--31135265	18	2.4	18	80	3	52	72	2	0	25	0.96
31135245--31135290	6	7.7	6	77	18	51	69	0	4	26	1.07
31135234--31135298	16	3.8	16	72	18	51	72	0	3	24	0.99
31137378--31137619	43	5.6	43	94	2	378	27	17	23	30	1.97
31142025--31142091	27	2.5	27	80	4	73	34	13	28	23	1.93
31144463--31144497	12	2.8	12	91	4	52	8	31	40	20	1.82
31146218--31146299	25	3.3	24	80	13	94	35	23	20	20	1.96
31146187--31146302	50	2.3	50	83	5	153	31	20	21	25	1.98
31150387--31150773	101	3.8	101	96	1	686	24	18	28	29	1.98
31150385--31150775	51	7.7	50	79	4	421	24	17	28	29	1.97
31168959--31168995	17	2.2	18	85	9	51	13	18	0	67	1.23
31170954--31170991	20	1.9	20	100	0	76	21	21	13	44	1.85
31171224--31171262	19	2.1	19	90	0	60	46	15	10	28	1.78
31177122--31177171	25	2.0	25	100	0	100	36	12	24	28	1.91
31180228--31180520	50	5.8	48	77	7	174	24	28	20	26	1.99
31180277--31180515	50	4.7	50	84	3	271	24	29	19	25	1.98
31180277--31180515	100	2.3	104	85	4	306	24	29	19	25	1.98
31184208--31184406	51	3.9	50	78	5	195	28	15	25	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31194276--31194502	45	5.2	45	89	6	349	38	15	21	25	1.92
31197407--31197590	79	2.3	81	83	8	227	25	27	22	23	2.00
31197388--31197590	40	5.1	40	81	9	229	25	27	22	24	2.00
31202966--31203205	50	4.7	50	81	5	257	23	26	21	28	1.99
31207108--31207356	50	4.9	50	81	6	227	27	21	28	22	1.99
31207895--31207968	28	2.6	30	77	12	75	47	0	1	51	1.09
31209255--31209286	16	2.0	16	93	0	55	25	15	0	59	1.36
31209510--31209704	51	3.8	51	82	6	252	32	29	15	23	1.95
31209512--31209696	101	1.8	102	89	3	293	32	28	16	23	1.96
31209506--31209730	101	2.2	102	80	3	267	32	28	15	24	1.95
31225938--31226006	27	2.5	26	86	4	84	40	23	17	18	1.91
31228135--31228181	24	1.9	25	86	4	69	38	0	36	25	1.56
31239017--31239088	30	2.4	30	80	0	72	31	8	31	27	1.86
31245668--31245697	15	2.0	15	93	0	51	30	20	0	50	1.49
31245647--31245696	26	1.9	26	84	8	66	22	18	2	58	1.49
31246131--31246173	21	2.0	21	90	0	68	34	25	13	25	1.93
31247714--31247750	19	1.9	19	100	0	74	56	10	10	21	1.64
31252483--31252555	21	3.5	21	73	0	65	17	20	31	30	1.96
31253072--31253110	18	2.2	18	85	0	51	23	23	2	51	1.61
31256179--31256226	26	1.9	25	83	8	62	52	18	0	29	1.46
31271419--31271730	29	10.8	29	81	0	354	39	12	27	20	1.89
31273094--31273176	42	2.0	41	92	2	139	30	8	12	49	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31280477--31280700	40	5.7	40	88	5	280	24	21	27	26	2.00
31282852--31282899	18	2.7	17	81	9	60	47	4	10	37	1.57
31295549--31295587	19	2.1	19	86	13	55	46	15	10	28	1.78
31296469--31296534	26	2.5	26	90	4	98	62	12	10	15	1.55
31297868--31297987	56	2.1	56	100	0	240	45	10	22	20	1.82
31303202--31303412	40	5.3	40	89	4	239	23	20	27	28	1.99
31312917--31312993	26	3.0	26	88	0	109	37	24	22	15	1.93
31313159--31313235	27	2.8	28	82	5	95	19	19	22	38	1.93
31313188--31313257	27	2.6	27	86	0	86	20	20	17	42	1.89
31317647--31317689	22	1.9	23	90	4	70	39	25	4	30	1.76
31319856--31320293	219	2.0	220	92	0	725	39	8	16	34	1.80
31320504--31320694	96	2.0	96	95	0	346	40	8	15	35	1.78
31321414--31321455	14	3.0	14	85	0	57	35	7	16	40	1.76
31321439--31321478	20	2.0	20	90	0	62	27	10	12	50	1.72
31321424--31321490	34	1.9	35	90	3	109	32	7	13	46	1.71
31321480--31321556	33	2.4	32	82	8	93	29	6	14	49	1.68
31324156--31324235	28	2.9	27	86	3	88	28	25	23	22	1.99
31324182--31324243	28	2.2	28	91	0	97	35	22	20	20	1.96
31324351--31324410	26	2.3	26	85	0	75	43	21	21	13	1.87
31324600--31324688	27	3.3	27	87	3	126	22	22	16	38	1.93
31330650--31330711	25	2.5	25	79	7	65	72	3	6	17	1.19
31331889--31331931	18	2.3	18	92	4	68	53	2	0	44	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31346937--31347003	32	2.1	32	91	0	107	34	19	14	31	1.92
31352148--31352188	15	2.7	15	88	7	57	39	14	0	46	1.45
31367331--31367378	21	2.2	22	85	3	62	18	27	16	37	1.92
31377420--31377603	40	4.6	40	83	6	196	23	21	27	27	1.99
31377420--31377600	80	2.3	81	83	9	221	23	22	27	27	1.99
31377421--31377640	40	5.6	38	78	10	165	24	21	27	26	1.99
31386998--31387244	50	4.8	50	81	6	248	28	21	27	23	1.99
31389300--31389343	21	2.1	21	87	4	63	38	9	13	38	1.77
31392367--31392433	33	2.0	34	82	8	84	31	23	20	23	1.98
31392399--31392481	28	3.0	28	87	5	125	31	21	22	24	1.98
31395218--31395303	40	2.2	40	91	2	138	33	27	15	23	1.94
31398559--31398613	29	1.9	28	88	3	83	69	3	9	18	1.30
31399768--31399839	12	6.0	12	72	15	51	73	0	20	5	1.03
31399770--31399843	24	3.1	23	79	11	78	74	0	20	5	1.01
31399749--31399832	19	4.4	19	76	8	73	69	0	22	8	1.15
31399766--31399838	18	4.0	17	81	13	83	71	0	21	6	1.09
31401560--31401610	26	2.0	26	92	0	84	17	25	31	25	1.97
31401587--31401809	43	5.3	42	73	9	150	23	14	24	37	1.93
31401622--31401821	85	2.4	84	89	2	294	24	15	24	36	1.93
31404596--31404636	21	2.0	21	95	0	73	41	17	17	24	1.89
31408013--31408164	27	5.6	27	93	3	241	30	28	13	26	1.94
31408013--31408164	55	2.8	55	94	0	259	30	28	13	26	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31413265--31413297	16	2.1	16	94	0	57	33	9	0	57	1.30
31415977--31416009	17	1.9	17	100	0	66	30	6	30	33	1.82
31416668--31416722	26	2.1	26	86	3	74	52	0	10	36	1.37
31430507--31430553	22	2.3	19	85	14	58	44	2	0	53	1.12
31430509--31430550	16	2.7	15	79	20	50	45	2	0	52	1.13
31431106--31431166	25	2.4	25	78	10	63	37	3	1	57	1.25
31431595--31431743	76	2.0	76	95	0	271	36	14	20	28	1.92
31433844--31433926	43	1.9	43	92	0	139	31	28	16	22	1.96
31437981--31438042	17	3.1	21	71	20	69	56	16	6	20	1.62
31440085--31440275	14	13.4	14	66	13	50	44	32	2	20	1.65

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141