genome.fa.s6.2.7.7.80.10.50.1000.131.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  42799318

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  131  of  141  ( 16820 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39235948--39235984	9	4.0	9	89	3	56	21	2	8	67	1.29
39236006--39236051	18	2.6	18	82	6	58	34	2	2	60	1.21
39242368--39242397	5	5.8	5	96	4	51	20	3	0	76	0.92
39242528--39242566	20	2.0	19	90	5	60	64	0	0	35	0.94
39261795--39261931	54	2.5	54	95	0	238	27	19	22	29	1.98
39263516--39263702	98	1.9	97	86	3	268	47	1	4	46	1.33
39263626--39263683	26	2.2	27	82	11	68	44	1	1	51	1.21
39268313--39268551	51	4.8	49	76	6	201	30	24	17	28	1.97
39268310--39268551	101	2.4	101	84	2	308	30	24	17	27	1.97
39268304--39268554	50	5.0	50	74	2	216	30	24	17	27	1.97
39271034--39271088	26	2.1	26	86	6	76	18	7	20	54	1.66
39272922--39273115	93	2.1	93	80	9	207	37	8	3	50	1.49
39273494--39273636	72	2.0	72	91	0	232	28	16	18	35	1.93
39276002--39276282	38	7.4	38	100	0	562	18	12	37	31	1.89
39277466--39277528	33	2.0	32	84	6	83	58	4	14	22	1.54
39279142--39279204	33	2.0	32	84	6	83	58	4	14	22	1.54
39280553--39280586	17	2.1	16	88	5	50	38	5	0	55	1.24
39281214--39281270	20	3.1	18	80	14	55	59	0	3	36	1.14
39281241--39281281	9	4.8	9	79	8	50	58	0	2	39	1.11
39284993--39285017	13	1.9	13	100	0	50	76	0	24	0	0.80
39288614--39288667	14	3.9	14	70	20	51	1	20	0	77	0.86
39288618--39288671	27	2.1	25	89	6	81	1	22	0	75	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39288732--39288788	27	2.1	27	93	0	96	14	28	15	42	1.86
39289687--39289721	18	2.0	18	94	5	63	57	0	14	28	1.38
39298369--39298480	43	2.6	43	89	1	170	25	16	25	32	1.97
39300921--39300953	17	2.0	17	88	5	50	48	12	9	30	1.71
39301928--39301952	4	6.2	4	100	0	50	24	0	0	76	0.80
39303840--39303868	14	2.1	14	93	6	51	0	10	0	89	0.48
39306010--39306056	13	3.8	12	84	15	60	72	10	0	17	1.12
39307610--39307658	25	1.9	26	95	4	91	32	12	10	44	1.75
39311306--39311342	13	3.1	13	77	22	53	59	0	32	8	1.27
39311325--39311412	39	2.3	39	84	7	108	68	2	25	4	1.20
39317024--39317171	49	3.0	49	96	0	278	40	23	5	30	1.77
39326401--39326435	18	1.9	18	88	0	52	17	40	25	17	1.90
39341679--39341984	152	2.0	152	98	0	596	43	12	10	34	1.76
39348679--39348726	25	1.9	25	83	8	62	43	10	6	39	1.64
39350492--39350560	35	1.9	35	82	8	86	34	20	11	33	1.89
39352928--39353879	481	2.0	481	98	0	1859	29	19	18	33	1.95
39366117--39366157	5	8.2	5	100	0	82	39	0	0	60	0.96
39367459--39367498	16	2.5	16	100	0	80	25	5	5	65	1.34
39371930--39372059	68	1.9	69	85	1	181	30	22	24	22	1.99
39389606--39389630	12	2.1	12	100	0	50	52	0	16	32	1.44
39394340--39394419	32	2.5	31	78	11	83	27	30	17	25	1.97
39395654--39395926	51	5.4	51	90	1	415	30	24	14	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39395654--39395926	101	2.7	102	89	1	415	30	24	14	30	1.95
39396000--39396032	17	1.9	17	88	11	50	45	21	0	33	1.52
39398564--39398601	14	2.5	16	87	8	53	63	2	7	26	1.35
39405989--39406167	85	2.1	85	98	0	349	26	26	8	38	1.85
39407656--39407733	32	2.5	31	87	6	111	25	28	21	24	1.99
39410047--39410244	99	2.0	99	94	0	351	31	12	20	35	1.90
39420597--39420658	24	2.6	24	86	0	88	33	22	3	40	1.70
39430719--39430744	5	5.2	5	100	0	52	23	76	0	0	0.78
39439968--39440003	17	2.1	18	89	5	56	8	22	5	63	1.43
39444546--39444592	24	1.9	25	86	4	69	36	0	38	25	1.56
39445262--39445618	27	13.2	27	82	0	390	42	20	17	20	1.89
39445262--39445618	108	3.3	105	86	5	464	42	20	17	20	1.89
39456226--39456253	14	2.0	14	100	0	56	35	14	14	35	1.86
39457217--39457258	22	1.9	22	90	0	66	35	0	2	61	1.09
39469775--39469818	18	2.4	18	85	11	54	9	18	2	70	1.24
39469786--39469841	27	2.1	27	86	3	78	7	17	1	73	1.15
39471992--39472025	9	3.7	9	84	7	50	52	11	2	32	1.53
39471992--39472028	19	1.9	19	94	0	65	51	10	5	32	1.60
39471984--39472107	54	2.3	54	90	0	194	45	12	8	33	1.74
39472046--39472084	19	2.1	19	90	0	60	51	12	7	28	1.67
39472183--39472222	20	2.0	21	85	5	55	35	15	17	32	1.91
39474893--39474997	28	3.8	28	85	2	131	23	28	11	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39474920--39475028	28	3.9	29	78	9	109	22	29	12	34	1.92
39474893--39475022	56	2.3	55	80	10	147	22	28	13	36	1.91
39483459--39483513	25	2.2	25	90	3	85	29	18	18	34	1.94
39487344--39487391	23	2.1	23	84	0	60	39	35	8	16	1.79
39496552--39496601	17	2.8	18	84	6	66	28	20	8	44	1.79
39503358--39503393	17	2.1	17	89	0	54	72	0	5	22	1.05
39504877--39504910	16	2.1	16	100	0	68	47	0	0	52	1.00
39506314--39506347	4	8.0	4	90	9	50	23	0	2	73	0.97
39506297--39506356	22	2.7	22	73	19	61	26	0	6	66	1.16
39510093--39510202	54	2.0	54	91	3	177	26	10	25	38	1.87
39516826--39516873	22	2.2	22	96	0	87	39	16	20	22	1.92
39525249--39525335	3	29.0	3	95	4	158	32	0	1	66	0.99
39532989--39533028	16	2.5	16	91	0	62	47	2	7	42	1.45
39533031--39533150	59	2.1	59	90	1	197	41	5	9	44	1.58
39533216--39533261	24	1.9	24	91	8	76	60	2	0	36	1.09
39533848--39533873	11	2.4	11	100	0	52	65	0	0	34	0.93
39533985--39534037	21	2.6	21	96	3	99	66	13	3	16	1.39
39533984--39534040	11	5.6	10	82	10	71	68	12	3	15	1.34
39534131--39534192	9	6.4	10	76	10	58	77	4	3	14	1.06
39534337--39534382	22	2.0	22	84	12	58	17	15	0	67	1.24
39534344--39534389	22	2.0	22	84	12	58	17	13	0	69	1.19
39538993--39539036	16	2.8	15	83	10	52	31	4	2	61	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39541203--39541260	30	1.9	30	89	0	89	13	27	36	22	1.92
39541614--39541638	3	8.3	3	100	0	50	68	0	0	32	0.90
39541869--39541933	3	22.3	3	87	6	98	70	0	29	0	0.87
39546274--39546423	75	2.0	75	96	0	273	38	7	21	32	1.81
39549413--39549468	28	2.0	28	92	0	94	23	8	3	64	1.38
39550729--39551098	46	8.1	46	76	7	245	32	3	23	40	1.71
39550762--39551090	23	14.3	23	73	12	246	31	3	24	41	1.70
39553551--39554128	289	2.0	289	100	0	1156	32	13	17	35	1.89
39555838--39555974	58	2.4	57	85	7	179	44	0	2	51	1.21
39575767--39576017	42	6.0	42	86	6	321	29	19	23	26	1.98
39581225--39581358	9	15.9	9	68	14	72	30	3	20	45	1.68
39581206--39581267	18	3.4	17	73	6	52	29	1	20	48	1.59
39581291--39581358	25	2.7	25	83	0	82	32	2	22	42	1.68
39581243--39581358	16	6.9	17	68	16	64	30	3	22	43	1.69
39586010--39586230	41	5.4	40	75	11	144	31	23	23	21	1.98
39586028--39586229	82	2.4	83	78	6	196	33	23	23	19	1.97
39586690--39586784	40	2.3	40	83	7	120	37	24	22	15	1.93
39592564--39592616	17	3.1	17	88	2	79	15	45	26	13	1.82
39596274--39596349	39	1.9	39	81	0	89	46	22	3	27	1.70
39596405--39596556	66	2.3	67	87	2	207	39	20	7	32	1.80
39603909--39604123	85	2.5	86	85	3	263	37	16	20	24	1.93
39605338--39605373	6	6.0	6	100	0	72	83	0	0	16	0.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39605867--39605914	23	2.1	23	92	0	78	39	10	18	31	1.85
39609173--39609268	50	1.9	51	82	6	124	38	5	19	36	1.75
39627218--39627411	27	7.2	27	78	5	151	43	19	14	22	1.87
39627239--39627411	27	6.4	27	79	4	161	45	17	15	21	1.85
39628082--39628122	17	2.4	17	95	0	73	12	19	46	21	1.82
39632470--39632519	19	2.5	20	78	15	59	74	6	2	18	1.12
39637591--39637648	27	2.1	27	84	6	73	39	22	15	22	1.91
39638237--39638324	27	3.3	27	75	15	83	30	7	18	43	1.78
39639984--39640021	3	12.7	3	94	0	58	26	0	5	68	1.11
39642882--39642960	27	2.9	27	78	14	99	39	27	15	17	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141