genome.fa.s6.2.7.7.80.10.50.1000.47.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  42799318

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  47  of  141  ( 16820 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14145295--14145608	82	3.8	81	83	5	380	19	16	20	44	1.87
14146096--14146449	23	15.0	23	68	12	182	42	18	11	27	1.85
14146096--14146449	70	5.0	70	88	4	462	42	18	11	27	1.85
14146149--14146449	47	6.4	47	69	14	163	43	17	12	26	1.84
14150716--14150977	23	11.2	23	71	9	172	43	17	13	25	1.85
14150657--14150962	70	4.3	70	87	5	375	42	17	12	27	1.85
14150700--14150998	140	2.1	141	84	5	381	43	17	12	26	1.84
14151698--14151778	28	3.0	24	75	20	72	30	23	12	33	1.92
14151707--14151778	28	2.6	28	90	0	108	29	26	12	31	1.93
14151835--14151873	14	2.7	15	84	8	53	28	17	0	53	1.44
14159713--14159780	23	2.9	23	80	8	66	72	1	4	22	1.11
14160310--14160363	19	2.8	19	97	0	99	37	16	9	37	1.81
14160313--14160373	19	3.3	18	88	4	61	37	16	11	34	1.85
14160647--14160898	128	2.0	129	81	3	303	28	21	20	29	1.98
14161193--14161995	44	18.2	44	75	6	664	30	25	15	29	1.96
14161217--14161846	132	4.8	132	91	1	926	30	24	15	29	1.96
14161201--14161995	132	6.0	133	89	2	905	30	25	15	29	1.96
14167503--14167565	33	1.9	33	90	6	101	71	3	1	23	1.09
14167474--14167557	39	2.2	39	80	4	98	72	1	2	23	1.03
14168055--14168129	19	3.8	19	87	6	105	37	14	9	38	1.79
14170910--14170967	30	2.0	29	86	6	82	27	3	1	67	1.17
14170921--14170977	23	2.6	22	81	15	73	31	1	1	64	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14172927--14173140	107	2.0	109	93	1	369	44	9	11	34	1.73
14174948--14175004	23	2.6	22	81	15	73	64	1	1	31	1.13
14174941--14175015	30	2.6	29	83	8	89	61	1	2	34	1.18
14178577--14178608	8	4.0	8	91	0	55	40	0	0	59	0.97
14178575--14178611	16	2.4	15	91	8	65	40	0	0	59	0.97
14178575--14178615	8	5.0	9	80	19	54	41	0	0	58	0.98
14178623--14178680	15	3.8	16	78	15	61	65	0	29	5	1.14
14178621--14178666	22	2.2	22	88	7	69	65	0	28	6	1.17
14178632--14178693	29	2.1	29	87	0	88	67	0	29	3	1.06
14185033--14185090	30	2.0	29	83	10	73	18	8	8	63	1.48
14209548--14209778	102	2.3	102	95	0	408	19	21	29	30	1.97
14216878--14217013	42	3.5	40	75	17	151	20	19	27	32	1.97
14216841--14217019	75	2.4	75	94	0	304	20	20	27	31	1.97
14216917--14217120	102	2.0	101	88	0	300	19	20	28	31	1.97
14216993--14217045	27	2.0	26	96	3	97	15	22	33	28	1.94
14216813--14217151	177	1.9	177	92	0	570	20	20	28	31	1.97
14223654--14224669	524	1.9	523	99	0	2005	33	20	15	30	1.93
14230964--14231937	69	14.2	69	79	1	851	40	19	20	19	1.91
14231916--14232012	48	2.0	48	100	0	194	39	18	14	27	1.90
14234894--14235003	57	1.9	57	87	3	159	21	25	36	16	1.94
14238013--14238078	21	3.2	21	79	8	66	59	1	0	39	1.07
14238068--14238107	16	2.4	18	80	16	50	65	0	2	32	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14244546--14244633	42	2.1	42	100	0	176	40	12	9	37	1.75
14251133--14251191	28	2.1	28	96	0	109	33	22	16	27	1.95
14252201--14252335	53	2.5	53	89	0	198	31	29	19	19	1.96
14253347--14253385	16	2.4	16	95	0	69	58	2	0	38	1.12
14254745--14254783	16	2.4	16	95	0	69	58	2	0	38	1.12
14256745--14256774	16	1.9	15	93	6	51	66	0	10	23	1.21
14257419--14257607	44	4.3	44	68	7	123	24	28	19	27	1.98
14257410--14258352	132	7.4	129	90	3	1124	26	25	19	28	1.99
14262284--14262352	18	3.8	18	84	0	66	36	5	42	15	1.72
14262666--14262731	24	2.8	24	71	11	64	57	1	0	40	1.08
14262709--14262878	56	3.1	56	85	9	235	38	11	14	35	1.82
14262971--14263050	40	2.0	40	92	4	137	55	7	11	26	1.62
14263469--14263511	21	2.1	20	95	4	77	46	9	9	34	1.68
14266428--14266469	19	2.2	20	86	4	59	28	2	2	66	1.16
14276451--14276587	54	2.5	54	83	7	161	29	22	14	33	1.94
14277220--14277256	3	12.3	3	100	0	74	67	0	0	32	0.91
14291910--14291962	25	2.2	26	83	10	67	43	1	0	54	1.11
14291917--14291968	21	2.4	21	87	9	70	46	1	0	51	1.12
14298389--14298466	24	3.5	24	72	19	78	14	33	10	42	1.79
14298407--14298491	43	2.0	43	97	0	161	15	29	11	43	1.82
14298410--14298487	24	3.5	24	67	16	76	16	28	12	42	1.85
14302532--14302580	24	2.1	23	88	3	71	53	8	2	36	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14308694--14308746	24	2.3	23	83	9	63	16	5	5	71	1.25
14308727--14308773	15	3.2	15	77	17	53	23	4	6	65	1.33
14310330--14310375	15	3.1	15	80	0	56	8	2	6	82	0.91
14311725--14311783	18	3.1	18	79	15	64	66	0	1	32	1.02
14311767--14311803	11	3.4	11	100	0	74	51	0	0	48	1.00
14311725--14311817	22	4.5	21	75	14	86	62	0	1	36	1.03
14316548--14316610	24	2.6	26	80	12	80	55	6	6	31	1.50
14318709--14318783	39	1.9	39	83	5	98	33	20	32	14	1.92
14323636--14324063	69	6.2	69	82	1	428	38	23	20	18	1.93
14323668--14324064	207	1.9	207	81	2	483	38	22	20	18	1.94
14323636--14324063	138	3.1	137	84	2	491	38	23	20	18	1.93
14328816--14328842	14	1.9	14	100	0	54	74	0	0	25	0.83
14329425--14329560	66	2.1	66	97	0	254	44	18	7	30	1.77
14334166--14334265	42	2.4	42	83	3	121	43	22	23	12	1.86
14340223--14340361	46	3.0	46	86	0	188	35	10	24	29	1.88
14346531--14346669	46	3.0	46	82	2	172	35	10	23	30	1.88
14346914--14347024	55	2.0	55	98	0	213	18	15	21	45	1.86
14348298--14348350	21	2.5	21	78	0	61	39	24	26	9	1.86
14348294--14348405	42	2.7	42	80	5	127	41	20	23	15	1.90
14351106--14351176	28	2.4	29	79	9	83	32	1	1	64	1.11
14358167--14358261	40	2.3	40	90	3	145	0	28	8	63	1.24
14358275--14358306	8	4.0	8	100	0	64	62	0	0	37	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14360875--14360947	38	1.9	38	97	0	137	43	31	2	21	1.67
14366107--14366241	66	2.0	66	92	0	225	28	8	20	42	1.82
14368361--14368662	148	2.0	148	98	0	586	26	27	10	35	1.89
14368601--14368922	161	2.0	161	98	0	626	25	21	17	35	1.95
14368880--14369043	74	2.2	72	82	6	197	36	12	14	35	1.85
14371089--14371122	8	4.2	8	85	14	52	23	0	2	73	0.97
14371873--14371925	26	2.0	26	85	0	70	28	24	24	22	2.00
14379523--14379559	9	4.0	9	86	6	56	2	10	2	83	0.84
14389267--14389331	30	2.2	30	82	0	76	30	18	27	23	1.97
14393291--14393323	11	3.0	11	90	0	57	54	39	0	6	1.25
14393688--14393735	25	1.9	25	100	0	96	33	25	6	35	1.81
14393713--14393807	42	2.2	44	86	3	131	40	15	4	40	1.67
14393787--14393822	15	2.4	15	95	0	63	44	11	0	44	1.39
14394012--14394067	16	3.5	16	92	7	96	33	10	0	55	1.35
14394132--14394160	11	2.6	11	100	0	58	72	0	0	27	0.85
14396896--14397032	17	7.4	17	66	19	69	32	3	15	48	1.62
14396882--14396946	22	3.2	22	70	20	77	30	6	15	47	1.70
14396891--14397041	37	4.0	37	90	5	223	33	3	15	47	1.65
14397046--14397120	9	7.9	9	77	11	69	24	6	28	41	1.80
14397046--14397121	20	3.9	20	84	6	102	23	6	27	42	1.79
14397057--14397093	11	3.5	11	85	14	60	21	5	24	48	1.71
14423326--14423367	20	2.0	22	86	9	61	21	11	16	50	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14424263--14424420	30	5.3	30	89	3	237	34	24	29	12	1.91
14436003--14436027	13	1.9	13	100	0	50	48	0	20	32	1.50
14437002--14437083	41	2.0	41	97	0	155	48	15	4	30	1.66
14440962--14440998	19	1.9	19	88	0	56	43	10	2	43	1.53
14445827--14445908	41	2.0	41	82	2	101	32	29	19	18	1.95
14454032--14454087	26	2.2	26	80	6	60	62	1	3	32	1.23
14455770--14455933	84	2.0	84	84	7	217	10	18	9	60	1.56
14465404--14465509	29	3.6	30	72	10	101	56	0	2	40	1.14
14465446--14465510	10	6.7	10	77	13	64	56	0	3	40	1.15
14465446--14465505	19	3.1	20	72	13	54	58	0	3	38	1.15

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141