genome.fa.s6.2.7.7.80.10.50.1000.123.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  42799318

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  123  of  141  ( 16820 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36588787--36588820	6	5.7	6	100	0	68	17	32	17	32	1.94
36588912--36589053	72	2.0	72	100	0	284	34	21	24	19	1.96
36589043--36589285	135	1.8	134	94	0	432	27	18	14	38	1.90
36589774--36589830	29	1.9	30	82	10	73	42	0	3	54	1.17
36589840--36589880	13	2.9	15	79	20	52	58	0	0	41	0.98
36592213--36592247	18	1.9	18	88	0	52	42	11	17	28	1.83
36603478--36603523	21	2.2	21	84	7	58	28	26	4	41	1.74
36609613--36609676	21	3.0	21	93	0	110	17	26	15	40	1.89
36630343--36630431	44	2.0	44	88	0	133	23	23	2	50	1.60
36636837--36636887	26	2.0	26	100	0	102	19	15	37	27	1.92
36636802--36636930	69	1.9	69	90	0	204	27	17	30	25	1.97
36636863--36636960	43	2.3	43	87	0	151	26	18	27	27	1.98
36641549--36641691	71	2.0	71	97	0	268	46	20	9	23	1.80
36642142--36642218	39	2.0	39	94	0	136	38	23	10	27	1.87
36644329--36644369	21	2.0	21	90	4	66	43	14	4	36	1.67
36644361--36644515	12	13.5	11	68	24	63	41	5	0	52	1.28
36644361--36644563	35	5.7	35	76	14	200	41	4	0	52	1.26
36644408--36644561	50	2.8	58	81	17	227	41	4	0	53	1.21
36644891--36644954	8	8.6	8	76	13	57	37	48	0	14	1.44
36644847--36644970	57	2.2	58	77	10	130	37	40	2	20	1.65
36644891--36644979	43	2.1	43	83	8	110	37	47	1	14	1.52
36644937--36644997	27	2.2	27	91	2	95	34	44	3	18	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36644899--36644986	14	6.3	14	75	11	74	36	45	1	17	1.56
36645219--36645251	14	2.3	15	94	5	59	36	33	0	30	1.58
36645300--36645336	14	2.6	14	91	0	65	45	29	0	24	1.53
36645649--36646004	123	2.9	122	84	2	453	30	26	20	23	1.99
36645649--36646010	41	8.9	41	83	3	401	30	26	20	22	1.98
36653258--36653310	19	2.8	19	80	11	65	77	1	15	5	1.04
36653255--36653309	24	2.3	24	87	0	83	76	1	16	5	1.06
36653258--36653312	6	9.0	6	76	11	58	76	1	16	5	1.06
36655474--36655513	20	2.0	20	95	0	71	25	22	20	32	1.98
36656357--36656410	27	2.0	27	92	0	90	22	18	12	46	1.83
36658940--36658974	18	1.9	18	88	0	52	28	17	11	42	1.83
36660040--36660074	18	2.0	17	88	5	52	71	2	2	22	1.13
36660496--36660613	41	2.9	41	93	1	209	26	22	22	29	1.99
36660680--36660737	26	2.2	26	82	11	66	56	3	10	29	1.49
36660989--36661019	14	2.1	15	94	5	55	32	0	35	32	1.58
36661041--36661105	7	9.3	7	76	6	60	26	0	38	35	1.57
36661688--36661721	16	2.1	16	88	5	50	70	2	2	23	1.15
36662167--36662393	118	1.9	120	89	5	354	44	13	12	29	1.81
36662282--36662714	80	5.5	77	92	3	672	45	12	9	32	1.74
36663965--36664024	24	2.5	24	83	2	77	23	11	6	58	1.57
36666289--36666516	43	5.3	43	93	0	366	20	19	32	27	1.97
36666580--36666621	22	1.9	22	95	0	75	40	28	21	9	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36668385--36668424	21	1.9	21	90	10	64	17	2	22	57	1.52
36677051--36677086	18	1.9	20	88	11	58	61	0	0	38	0.96
36679036--36679092	22	2.6	22	86	5	80	17	42	22	17	1.89
36680295--36680327	14	2.4	14	100	0	66	42	18	0	39	1.50
36681723--36681764	22	2.0	21	85	4	57	33	0	2	64	1.07
36685285--36685368	37	2.3	37	85	8	109	35	13	11	39	1.81
36686822--36686903	40	2.1	38	86	4	110	50	1	35	13	1.50
36686958--36687005	22	2.2	22	85	7	62	50	0	0	50	1.00
36686953--36687030	39	2.0	39	82	9	97	51	2	0	46	1.14
36691264--36691779	126	4.2	126	87	4	712	28	16	15	38	1.90
36691838--36691925	35	2.6	34	78	10	81	45	17	0	37	1.48
36691862--36691963	37	2.9	34	85	10	125	43	13	0	43	1.44
36691862--36691944	33	2.4	35	90	6	134	42	10	0	46	1.38
36691867--36691971	34	3.1	33	84	12	115	40	13	0	46	1.43
36691872--36691975	37	3.0	33	75	16	86	44	13	0	42	1.44
36691945--36692004	28	2.2	27	90	3	93	38	18	0	43	1.50
36691945--36692021	28	2.8	27	82	7	84	40	18	0	41	1.50
36708772--36708960	51	3.7	51	85	4	258	28	13	26	31	1.94
36708773--36708855	26	3.2	26	65	27	68	30	12	25	32	1.92
36708776--36708993	101	2.1	102	82	4	253	31	12	25	30	1.93
36716436--36716485	12	4.1	12	72	23	50	52	0	2	46	1.12
36719422--36719489	29	2.3	29	82	5	84	27	29	13	29	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36719311--36719638	174	1.9	174	96	0	602	31	24	14	30	1.94
36719591--36719669	29	2.7	30	82	13	110	30	30	13	25	1.94
36725932--36725976	24	1.9	23	95	0	72	48	24	2	24	1.62
36725922--36725978	24	2.5	21	76	17	60	45	26	3	24	1.69
36726887--36726990	42	2.5	42	93	0	172	28	25	16	29	1.97
36731653--36732410	379	2.0	379	100	0	1516	22	31	16	29	1.96
36733114--36733289	88	2.0	88	100	0	352	37	9	6	46	1.62
36735492--36735600	42	2.6	42	88	2	148	33	10	19	36	1.85
36735690--36735806	48	2.4	48	88	0	171	24	18	23	33	1.97
36735690--36735809	24	5.0	24	86	0	141	24	18	23	34	1.96
36742555--36742814	132	2.0	132	98	0	502	29	21	9	40	1.85
36743727--36743794	29	2.3	29	85	5	93	27	30	13	27	1.94
36743616--36743943	174	1.9	174	94	0	575	30	25	14	29	1.95
36743896--36743974	29	2.7	30	82	13	110	30	30	13	25	1.94
36751407--36751887	240	2.0	240	98	0	935	22	12	30	33	1.92
36760417--36760481	21	3.2	21	75	20	84	13	26	20	40	1.89
36760399--36760487	39	2.3	39	98	0	169	14	24	22	38	1.92
36764939--36765043	39	2.6	39	86	5	122	24	22	27	24	2.00
36764899--36765062	40	4.1	40	80	12	169	25	23	27	24	2.00
36764899--36765049	79	1.9	80	82	6	191	25	23	27	23	2.00
36768001--36768855	45	19.0	45	100	0	1710	17	20	26	35	1.95
36777973--36778060	40	2.2	40	88	9	135	15	43	21	19	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36778302--36778377	38	2.0	38	94	0	134	30	30	9	30	1.88
36778945--36779169	47	4.8	47	80	7	237	22	30	19	28	1.98
36778945--36779206	140	1.9	141	86	4	377	23	28	19	29	1.98
36783171--36783387	40	5.5	40	80	6	219	23	22	28	25	1.99
36783171--36783387	79	2.7	79	80	9	228	23	22	28	25	1.99
36791256--36791458	40	5.1	40	83	5	225	21	24	28	25	1.99
36791532--36791596	33	2.0	33	96	0	121	26	21	21	30	1.98
36796020--36796101	43	2.0	41	87	4	119	21	21	34	21	1.97
36796031--36796178	40	3.6	41	77	5	156	25	19	30	24	1.98
36802286--36802374	28	3.2	28	91	0	142	35	11	23	29	1.90
36802600--36802704	40	2.6	40	76	1	111	26	20	29	23	1.99
36805000--36805340	27	12.6	27	83	0	412	40	19	7	32	1.80
36804990--36805340	54	6.5	54	87	1	454	39	19	7	33	1.80
36805000--36805448	81	5.5	81	78	5	397	39	20	8	32	1.82
36805000--36805449	27	16.7	27	75	9	303	39	20	8	32	1.82
36805433--36805762	27	12.3	27	85	1	385	34	22	19	23	1.97
36806380--36806481	27	3.8	27	88	5	143	18	24	21	35	1.96
36806621--36806684	25	2.6	25	84	0	83	21	20	10	46	1.81
36807983--36808324	27	12.7	27	81	1	380	38	17	9	34	1.82
36808307--36808366	27	2.2	27	84	0	75	43	20	8	28	1.80
36808205--36808365	81	2.0	81	80	4	182	37	20	9	32	1.86
36808319--36808378	27	2.2	28	82	8	79	36	23	13	26	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36808416--36808745	27	12.3	27	82	0	365	36	19	19	24	1.95
36809190--36809236	22	2.1	22	84	7	60	23	27	21	27	1.99
36809395--36809496	27	3.8	27	85	5	134	19	24	20	35	1.96
36809633--36809726	6	15.3	6	71	16	59	20	18	12	48	1.80
36809633--36809705	31	2.4	31	88	0	101	20	19	12	47	1.81
36811684--36812023	27	12.6	27	83	0	430	39	18	8	32	1.81
36811684--36812023	54	6.3	54	89	1	486	39	18	8	32	1.81
36811684--36812078	27	14.7	27	82	2	427	39	19	8	32	1.82
36811684--36812132	27	16.7	27	75	9	272	38	19	8	32	1.83
36812116--36812444	27	12.3	27	84	1	394	34	19	19	25	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141