genome.fa.s6.2.7.7.80.10.50.1000.114.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  42799318

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  114  of  141  ( 16820 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33439410--33439694	56	5.4	56	76	18	256	35	1	20	43	1.59
33439461--33439694	103	2.3	102	84	12	322	35	0	20	44	1.52
33439499--33439694	103	1.9	106	91	6	328	35	0	20	44	1.52
33439461--33439663	47	4.1	47	84	13	273	36	0	19	43	1.51
33441322--33441383	29	2.3	26	75	8	61	22	16	12	48	1.80
33449585--33449641	28	2.0	28	89	0	87	33	14	19	33	1.91
33453477--33453548	32	2.2	32	85	5	90	31	6	13	47	1.70
33453626--33453661	18	1.9	18	88	5	54	16	25	0	58	1.38
33454891--33454932	16	2.7	15	79	13	50	28	0	9	61	1.27
33457996--33458082	43	2.0	43	97	0	165	25	14	6	52	1.66
33459916--33459959	16	2.8	16	83	13	63	20	4	4	70	1.23
33462937--33463159	29	7.7	29	79	6	218	28	13	20	37	1.91
33469723--33469796	36	2.1	36	84	5	96	37	18	18	24	1.94
33469787--33469819	16	2.1	16	100	0	66	36	6	24	33	1.80
33476386--33476471	6	14.2	6	74	11	50	23	5	3	67	1.28
33496340--33496364	5	5.0	5	100	0	50	20	0	0	80	0.72
33499523--33499576	20	2.7	20	82	0	72	31	14	12	40	1.84
33501537--33501582	24	1.9	24	82	8	58	36	4	6	52	1.47
33501635--33501885	30	8.4	30	80	7	228	37	11	25	26	1.89
33501635--33501885	60	4.2	60	77	5	267	37	11	25	26	1.89
33501754--33501825	29	2.4	30	86	2	101	38	9	27	23	1.86
33509987--33510025	18	2.2	18	100	0	78	38	10	10	41	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33511931--33511980	25	2.0	25	96	0	91	26	20	12	42	1.86
33517986--33518048	17	3.5	17	74	19	65	50	12	1	34	1.50
33518175--33518291	39	3.0	39	93	1	191	20	2	27	49	1.62
33518273--33518311	17	2.2	18	95	4	71	12	0	46	41	1.42
33518291--33518324	13	2.7	13	90	4	52	11	2	47	38	1.55
33518272--33518335	30	2.1	31	88	8	96	17	1	42	39	1.59
33518450--33518488	17	2.2	18	95	4	71	12	0	46	41	1.42
33518468--33518501	13	2.7	13	90	4	52	11	2	47	38	1.55
33518449--33518512	30	2.1	31	88	8	96	17	1	42	39	1.59
33518252--33518606	177	2.0	177	100	0	710	30	11	21	36	1.89
33526307--33526340	17	1.9	18	94	5	61	50	5	5	38	1.51
33528160--33528425	67	4.0	68	87	2	378	27	15	18	38	1.91
33528161--33528423	134	2.0	134	90	1	420	28	15	17	38	1.91
33528363--33528484	58	2.1	58	86	6	167	28	13	14	42	1.84
33533134--33533303	45	3.8	45	82	1	180	43	11	20	24	1.84
33534754--33534886	70	1.9	67	86	4	185	34	12	9	43	1.75
33535685--33535773	33	2.7	33	86	10	128	26	11	33	28	1.91
33537172--33537213	19	2.2	18	87	8	57	33	0	0	66	0.92
33537181--33537225	19	2.4	19	88	7	65	26	0	2	71	0.98
33538573--33538646	29	2.6	28	85	6	94	17	0	32	50	1.47
33538599--33538653	29	1.9	28	85	3	74	14	1	34	49	1.54
33540341--33540414	29	2.6	28	87	6	103	17	0	31	51	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33542212--33542280	21	3.3	21	68	8	59	15	18	17	47	1.82
33542226--33542299	21	3.5	21	75	0	67	13	18	20	47	1.82
33544574--33544746	73	2.4	72	90	0	265	26	24	27	21	2.00
33544647--33545182	114	4.7	113	91	2	763	24	22	26	25	2.00
33545530--33545588	16	3.9	14	79	14	55	23	1	44	30	1.64
33545536--33545578	16	2.7	16	85	10	61	20	2	44	32	1.65
33549569--33549753	43	4.3	42	86	4	237	22	17	27	32	1.96
33549545--33549753	43	4.9	43	83	4	228	24	18	26	31	1.97
33549846--33549888	22	2.0	22	90	0	68	44	27	18	9	1.80
33550354--33550390	4	9.2	4	100	0	74	24	0	27	48	1.51
33557185--33557227	22	2.0	21	86	8	61	25	37	4	32	1.77
33561667--33561715	22	2.3	22	85	3	64	30	4	40	24	1.74
33562008--33562064	24	2.4	22	77	13	60	73	1	3	21	1.07
33564659--33564705	24	2.0	24	87	4	69	68	6	0	25	1.13
33564664--33564697	17	1.9	18	94	5	61	70	5	0	23	1.09
33564659--33564706	23	2.0	23	88	8	69	68	6	0	25	1.12
33567683--33567737	22	2.5	22	84	3	65	21	14	34	29	1.93
33567697--33567739	22	2.0	22	95	0	77	20	16	34	27	1.94
33567698--33567746	22	2.2	22	88	0	71	24	20	28	26	1.99
33571432--33571535	28	3.7	28	82	8	113	46	20	15	18	1.84
33574347--33574388	16	2.9	14	83	13	57	30	38	7	23	1.82
33574367--33574429	26	2.3	27	78	8	74	39	36	11	12	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33578936--33579033	17	5.4	17	64	13	52	32	4	14	48	1.62
33578951--33579042	17	5.0	18	67	15	62	34	4	15	45	1.66
33578931--33579042	37	3.0	37	92	0	179	33	4	15	46	1.66
33579480--33579725	127	2.0	122	80	10	277	45	6	8	39	1.62
33580171--33580230	30	2.0	31	90	3	95	20	38	0	41	1.52
33580558--33580710	77	2.0	76	92	2	254	48	7	5	37	1.57
33581141--33581288	74	2.0	74	98	0	287	33	12	15	38	1.85
33584310--33584405	46	2.1	45	86	3	138	37	1	16	44	1.55
33585320--33585361	21	2.0	21	85	0	57	35	0	26	38	1.57
33585737--33585864	64	2.0	64	79	0	139	25	19	21	33	1.97
33587725--33587839	42	2.7	41	77	5	113	19	22	16	41	1.90
33590596--33590675	25	3.1	25	83	7	90	7	20	1	71	1.17
33590679--33590727	26	1.9	25	87	4	71	36	4	0	59	1.17
33594967--33595052	4	20.8	4	76	10	75	20	4	4	69	1.25
33594963--33595040	36	2.2	37	79	11	90	20	5	5	69	1.28
33595170--33595591	108	4.0	107	87	6	529	28	14	19	36	1.92
33596068--33596106	18	2.2	18	100	0	78	25	17	20	35	1.95
33602543--33602676	66	2.0	66	97	0	250	42	11	19	26	1.85
33603245--33603411	80	2.1	80	96	1	309	40	6	6	46	1.56
33603268--33603396	40	3.2	39	64	17	102	43	5	7	43	1.56
33607996--33608057	31	2.0	31	100	0	124	32	9	16	41	1.80
33615936--33616093	5	31.8	5	98	1	309	59	0	0	40	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33625422--33625461	21	1.9	21	85	10	55	55	0	0	45	0.99
33640007--33640053	19	2.5	20	86	6	62	61	8	0	29	1.25
33647039--33647067	13	2.2	13	100	0	58	41	0	0	58	0.98
33647347--33647438	30	3.0	30	78	15	91	39	5	14	41	1.68
33647354--33647501	61	2.4	61	81	3	172	42	5	11	40	1.64
33650165--33650225	18	3.6	18	76	13	56	11	6	4	77	1.12
33650835--33650870	3	12.0	3	100	0	72	33	0	0	66	0.92
33650882--33650978	50	2.0	48	82	13	117	31	9	11	47	1.71
33651445--33651473	13	2.1	14	93	6	51	34	6	6	51	1.55
33651451--33651492	17	2.4	18	84	7	52	42	4	4	47	1.45
33655130--33655238	52	2.1	52	92	0	182	31	19	31	18	1.96
33657179--33657223	19	2.4	19	85	3	56	40	2	2	55	1.24
33657245--33657300	25	2.1	27	84	12	73	41	1	0	57	1.09
33666854--33666888	16	2.2	16	90	5	54	82	14	0	2	0.77
33667321--33667358	19	2.0	20	85	15	53	10	13	0	76	1.02
33674172--33674202	16	1.9	16	93	0	53	35	0	64	0	0.94
33684396--33684432	17	2.1	18	90	5	58	29	2	0	67	1.04
33685802--33685843	14	2.9	15	77	22	54	35	0	4	59	1.19
33687442--33687531	32	2.8	33	77	17	93	60	4	2	33	1.29
33687486--33687531	16	2.8	17	70	9	51	58	6	0	34	1.24
33687764--33687804	3	13.3	3	85	14	57	63	0	0	36	0.95
33687761--33687810	21	2.4	21	86	6	75	62	4	0	34	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33689197--33689308	44	2.5	44	80	1	134	25	25	20	28	1.99
33689267--33690019	88	8.6	88	87	2	847	23	26	23	25	2.00
33689374--33689514	43	3.2	43	68	11	124	21	29	24	24	1.99
33689307--33689445	44	3.2	43	66	11	120	23	23	25	26	2.00
33689329--33689472	45	3.2	45	67	11	134	22	26	22	28	1.99
33689353--33689489	44	3.1	44	68	12	136	23	27	24	24	2.00
33689570--33689708	44	3.2	43	70	4	125	20	21	29	28	1.98
33689197--33690019	263	3.1	263	86	1	1058	23	26	23	26	2.00
33696359--33696447	30	2.8	33	80	17	93	59	4	2	33	1.30
33696688--33696753	15	4.7	15	71	17	52	60	1	3	34	1.21

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141