genome.fa.s6.2.7.7.80.10.50.1000.60.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  42799318

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  60  of  141  ( 16820 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17944121--17944219	28	3.6	27	81	11	112	28	28	12	31	1.92
17950987--17951035	21	2.3	21	78	0	62	38	4	30	26	1.75
17953060--17953225	30	5.5	31	71	15	123	37	12	25	24	1.90
17953034--17953238	90	2.3	88	80	6	216	37	14	24	23	1.92
17953216--17953274	30	2.0	30	82	0	73	40	16	20	22	1.91
17953216--17953282	30	2.2	30	78	2	71	41	14	22	20	1.89
17954367--17954396	12	2.5	12	94	0	51	23	43	26	6	1.78
17954497--17954790	74	4.0	74	98	0	554	19	26	26	26	1.99
17960619--17960682	29	2.2	29	91	0	101	37	14	26	21	1.92
17960672--17960867	30	6.5	31	77	10	183	40	12	25	21	1.89
17960617--17960897	120	2.4	119	84	3	370	38	13	25	22	1.91
17960709--17960896	60	3.1	59	70	13	168	39	13	24	21	1.90
17977524--17978084	44	12.7	44	77	5	469	26	16	27	29	1.97
17977519--17978037	132	3.9	132	95	0	923	26	16	26	29	1.97
17978108--17978257	45	3.2	45	68	18	133	29	19	22	29	1.98
17978075--17978263	97	2.0	95	95	2	342	29	19	21	29	1.98
17981702--17981773	19	3.8	19	88	0	117	36	13	11	38	1.81
17987289--17987519	46	5.0	46	88	2	347	36	9	24	29	1.87
17990170--17990227	27	2.1	27	96	0	107	44	5	15	34	1.69
18000878--18000958	24	3.4	24	77	13	87	49	0	1	49	1.08
18000894--18000932	11	3.4	11	80	13	51	51	0	2	46	1.14
18000877--18000957	15	5.2	15	71	21	60	48	0	1	50	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18000912--18000950	14	2.5	16	88	12	55	46	0	0	53	1.00
18002099--18002194	39	2.5	39	80	6	108	20	23	28	27	1.99
18008705--18008730	11	2.4	11	100	0	52	50	7	42	0	1.31
18009389--18009432	3	15.0	3	80	4	54	34	0	4	61	1.16
18009787--18009882	39	2.5	39	80	6	108	20	23	28	27	1.99
18011749--18011859	41	2.7	41	81	5	134	22	28	18	29	1.98
18012254--18012416	72	2.3	69	78	14	177	41	13	3	41	1.60
18012395--18012426	15	2.1	15	100	0	64	46	12	0	40	1.42
18013791--18013815	13	1.9	13	100	0	50	68	24	0	8	1.16
18015520--18015561	22	1.9	22	85	9	59	40	0	19	40	1.51
18025877--18025970	9	10.4	9	90	0	134	23	9	24	42	1.84
18026805--18026910	42	2.5	42	84	0	131	33	45	2	18	1.64
18033756--18033800	17	2.6	17	79	6	56	53	0	2	44	1.13
18033847--18033901	25	2.2	25	81	12	60	49	5	1	43	1.36
18036031--18036074	7	6.3	7	94	0	79	43	0	0	56	0.99
18036039--18036084	21	2.2	21	88	0	65	47	2	2	47	1.26
18036789--18036825	16	2.3	16	90	0	56	27	2	16	54	1.56
18038255--18038301	15	3.1	15	78	6	58	59	12	6	21	1.55
18061120--18061157	15	2.4	16	78	8	51	44	7	0	47	1.32
18065135--18065343	104	2.0	104	99	0	409	30	9	13	46	1.75
18078642--18078684	14	3.0	13	83	16	50	39	0	0	60	0.97
18078748--18078829	38	2.1	38	84	9	101	52	6	2	39	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18078937--18078964	6	4.7	6	100	0	56	67	0	0	32	0.91
18082367--18082424	24	2.5	23	91	5	98	56	0	3	39	1.16
18082682--18082740	28	2.1	28	100	0	118	57	3	0	38	1.15
18085416--18085452	17	2.2	17	90	0	56	59	2	16	21	1.49
18085445--18085479	15	2.3	15	90	0	52	51	0	11	37	1.38
18085570--18085613	22	2.0	21	82	4	52	29	11	0	59	1.32
18093686--18093755	27	2.6	27	93	0	122	14	21	21	42	1.88
18093808--18093881	24	3.0	24	74	14	71	17	18	17	45	1.85
18116640--18116733	46	2.0	46	93	0	161	29	26	8	35	1.86
18117479--18117515	17	2.2	17	95	0	65	51	21	2	24	1.61
18117662--18117811	42	3.6	42	77	13	130	42	16	23	18	1.88
18117743--18117810	21	3.2	20	71	8	64	41	17	23	17	1.90
18127443--18127577	30	4.5	31	72	12	102	33	20	5	41	1.74
18127443--18127533	32	2.9	32	81	3	96	34	20	2	42	1.65
18128087--18128142	4	13.8	4	74	10	51	75	1	23	0	0.90
18128087--18128142	20	2.7	21	83	5	69	75	1	23	0	0.90
18128087--18128164	25	3.2	23	80	10	66	70	1	28	0	0.95
18128216--18128257	18	2.3	18	87	0	57	35	50	14	0	1.43
18128448--18128482	15	2.3	15	95	0	61	85	5	8	0	0.73
18128931--18129283	18	19.9	18	72	9	226	30	11	11	46	1.75
18128928--18129283	35	10.0	35	73	12	205	30	12	10	46	1.76
18129182--18129283	52	2.0	52	82	7	127	30	11	11	46	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18128930--18129341	18	23.4	17	69	13	140	32	12	10	45	1.75
18129761--18131740	989	2.0	989	100	0	3960	28	16	17	36	1.92
18132358--18134181	911	2.0	911	99	0	3639	31	16	20	30	1.95
18133595--18135059	732	2.0	732	100	0	2930	30	17	22	28	1.97
18141390--18141425	18	2.0	18	100	0	72	33	5	44	16	1.71
18143994--18144061	15	4.5	15	76	9	57	82	7	8	1	0.91
18143994--18144062	22	3.1	21	77	18	61	82	7	8	1	0.90
18143997--18144045	12	4.2	12	75	15	50	81	10	6	2	0.94
18143995--18144061	27	2.4	29	80	9	77	82	7	8	1	0.92
18144912--18145573	75	8.7	73	80	7	560	28	15	19	35	1.93
18152587--18152679	25	3.6	25	74	8	80	17	22	21	38	1.93
18160472--18160537	3	22.0	3	84	0	87	60	3	4	31	1.32
18160481--18160564	15	5.7	15	81	5	100	59	2	4	33	1.31
18162377--18162829	131	3.5	131	91	1	719	24	24	20	30	1.98
18164058--18164091	7	5.0	7	92	7	61	14	14	0	70	1.17
18164058--18164087	13	2.3	13	100	0	60	13	13	0	73	1.10
18170327--18170407	3	27.7	3	80	5	94	60	1	3	34	1.22
18172292--18172323	13	2.4	13	94	5	55	15	0	0	84	0.63
18172568--18172612	18	2.5	18	79	10	56	62	2	4	31	1.27
18172876--18172919	19	2.2	20	84	4	54	52	6	2	38	1.41
18172983--18173038	27	2.1	27	100	0	112	51	7	0	41	1.29
18173049--18173083	17	2.1	17	100	0	70	57	11	5	25	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18175495--18175587	39	2.5	37	80	7	98	27	29	22	20	1.98
18176713--18176765	14	3.6	14	82	5	52	18	11	1	67	1.30
18177043--18177079	14	2.7	13	88	12	56	59	8	2	29	1.40
18177046--18177072	7	3.9	7	100	0	54	59	11	0	29	1.32
18178419--18178453	18	2.0	17	88	5	52	62	0	0	37	0.95
18178396--18178489	47	2.1	45	84	13	122	65	1	1	31	1.06
18178422--18178486	24	2.9	23	75	20	66	63	0	1	35	1.04
18178494--18178521	6	4.7	6	100	0	56	50	0	0	50	1.00
18183091--18183858	156	4.9	156	91	1	1204	39	14	15	31	1.87
18183871--18184306	157	2.8	157	91	1	669	37	15	16	30	1.89
18183579--18185178	291	5.3	297	70	16	1082	37	15	15	31	1.89
18183435--18185178	448	3.9	448	96	0	3091	37	15	15	31	1.88
18184319--18184754	157	2.8	157	91	1	669	38	15	16	30	1.89
18183100--18185178	896	2.3	899	92	2	3382	38	15	15	31	1.88
18184767--18185178	157	2.6	156	90	0	626	38	14	15	30	1.88
18187605--18188389	156	5.0	156	87	2	1101	38	15	15	30	1.88
18187605--18189681	312	6.6	313	87	3	2832	38	14	15	31	1.88
18188215--18188566	177	2.0	177	89	1	535	39	15	15	30	1.88
18188392--18189681	156	8.3	155	90	2	1852	38	14	16	31	1.88
18187605--18189690	468	4.4	468	86	4	2880	38	14	15	31	1.88
18195370--18195475	34	3.0	33	78	15	113	33	17	17	30	1.94
18195399--18195473	38	2.0	38	91	0	123	34	18	17	29	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18199331--18199366	6	6.0	6	100	0	72	33	16	33	16	1.92
18200002--18200036	18	2.0	17	88	5	52	45	0	0	54	0.99
18200196--18200290	45	2.1	44	88	1	136	33	27	6	32	1.82
18203669--18203734	29	2.3	29	82	10	73	28	3	3	65	1.23
18205280--18205353	30	2.4	31	76	14	75	24	18	8	48	1.75
18207959--18208016	25	2.3	24	82	8	62	46	0	3	50	1.18
18207959--18208084	47	2.6	49	72	11	123	44	2	3	50	1.31
18208191--18208245	24	2.2	26	81	12	71	45	0	1	52	1.11
18208369--18208473	44	2.5	40	76	15	113	31	29	4	34	1.78
18208367--18208476	45	2.6	44	81	8	131	31	29	5	33	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141