genome.fa.s6.2.7.7.80.10.50.1000.106.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  42799318

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  106  of  141  ( 16820 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30349628--30349672	19	2.4	19	82	14	58	48	0	0	51	1.00
30350366--30350401	18	2.0	18	88	0	54	72	0	8	19	1.10
30352859--30353023	54	3.1	54	79	1	152	37	18	20	23	1.94
30352894--30353023	27	4.8	27	86	0	161	38	18	20	22	1.93
30352894--30353052	27	5.9	27	83	2	104	39	17	20	22	1.92
30352897--30353052	81	1.9	81	84	0	204	38	17	21	22	1.93
30354501--30354801	152	2.0	152	94	1	523	28	12	32	26	1.93
30356750--30356879	27	4.8	27	76	9	131	38	18	20	23	1.93
30356750--30356896	27	5.5	26	72	12	84	38	17	21	23	1.93
30356770--30356895	54	2.3	52	81	9	137	36	18	22	23	1.95
30356750--30356905	81	1.9	81	82	7	192	37	17	19	25	1.94
30359447--30359489	20	2.1	20	91	4	68	32	23	0	44	1.54
30365543--30365583	22	1.9	22	85	5	57	39	2	29	29	1.70
30374498--30374527	13	2.3	13	100	0	60	40	43	0	16	1.48
30374629--30374658	13	2.3	13	100	0	60	40	43	0	16	1.48
30374448--30374705	131	2.0	131	100	0	516	47	27	3	21	1.68
30374824--30374866	9	4.8	9	88	0	59	25	9	25	39	1.85
30380396--30380420	13	1.9	13	100	0	50	32	4	24	40	1.73
30392991--30393037	21	2.2	21	92	0	76	2	12	10	74	1.16
30410133--30410162	14	2.1	14	100	0	60	43	13	0	43	1.43
30415790--30415819	14	2.1	14	100	0	60	43	13	0	43	1.43
30416643--30416703	30	2.0	30	93	0	104	19	27	32	19	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30424937--30425242	96	3.3	95	73	9	299	30	21	16	32	1.95
30425252--30425421	89	1.9	89	87	0	250	26	25	22	25	2.00
30425279--30425448	89	1.9	89	83	0	223	26	25	21	26	2.00
30425434--30425903	44	10.5	45	72	11	283	26	24	18	30	1.98
30425434--30425737	133	2.3	133	79	5	312	26	25	19	28	1.98
30425374--30425867	178	2.8	178	90	0	731	27	23	19	29	1.98
30435705--30435738	17	2.0	17	94	0	59	26	5	26	41	1.78
30437723--30437840	55	2.1	55	90	1	191	33	16	20	29	1.94
30438119--30438165	24	1.9	25	83	12	62	70	0	8	21	1.14
30440677--30440714	20	1.9	20	88	0	58	42	7	10	39	1.69
30444128--30444167	18	2.2	18	86	8	55	40	0	7	52	1.30
30456826--30456931	54	2.0	54	84	3	142	27	24	23	24	2.00
30458943--30459013	35	2.0	35	100	0	142	30	11	16	40	1.84
30459364--30459437	37	2.0	37	100	0	148	32	8	13	45	1.73
30466052--30466077	11	2.4	11	100	0	52	53	0	0	46	1.00
30470337--30470369	3	11.0	3	100	0	66	33	0	0	66	0.92
30470649--30470723	31	2.5	30	82	2	96	29	20	10	40	1.86
30471220--30471356	72	1.9	72	98	0	265	32	14	18	34	1.92
30473657--30473781	39	3.4	39	64	26	92	63	0	2	34	1.08
30473670--30473764	10	9.5	10	76	13	63	58	0	3	37	1.14
30473681--30473715	18	1.9	18	94	0	61	62	0	0	37	0.95
30481291--30481839	132	4.2	132	92	0	920	30	20	23	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30481341--30481789	44	10.2	44	63	9	171	30	20	23	25	1.98
30481908--30482794	44	20.4	45	69	12	276	28	20	22	27	1.99
30481831--30482412	217	2.7	217	88	2	857	28	20	23	27	1.99
30481950--30482772	390	2.1	390	87	2	1163	28	20	22	27	1.99
30482263--30482543	84	3.3	84	71	15	277	26	19	24	29	1.99
30482338--30482794	217	2.1	218	85	4	609	28	21	22	27	1.99
30481831--30482581	84	8.7	83	66	16	260	28	20	23	27	1.99
30482167--30482584	173	2.4	171	92	4	603	27	20	23	28	1.99
30482340--30482846	217	2.3	217	82	5	526	28	21	22	27	1.99
30481950--30482888	390	2.4	390	83	4	1047	29	20	22	27	1.98
30483157--30483240	19	4.4	18	82	8	80	38	8	17	35	1.80
30483159--30483233	19	3.8	19	91	6	123	37	9	16	37	1.80
30483160--30483222	21	3.1	21	95	4	112	38	9	14	38	1.78
30483172--30483256	21	4.0	22	79	14	81	37	7	16	38	1.76
30483222--30483266	23	2.0	23	86	4	65	33	4	15	46	1.66
30483369--30483401	17	1.9	17	88	11	50	63	6	21	9	1.45
30483438--30483476	19	2.0	21	85	10	55	15	10	5	69	1.34
30483680--30483726	3	16.0	3	78	12	53	29	2	2	65	1.15
30483731--30483894	24	6.9	25	74	12	125	34	9	6	49	1.61
30483728--30483791	26	2.4	27	89	7	103	40	9	3	46	1.52
30483741--30483894	23	6.5	24	74	10	131	33	9	7	50	1.62
30483731--30483898	46	3.6	45	83	8	196	34	8	7	49	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30484090--30484151	32	1.9	33	86	3	90	35	11	1	51	1.47
30489350--30489393	23	1.9	22	82	17	54	36	25	0	38	1.56
30489438--30489526	45	2.0	45	90	0	142	34	24	15	24	1.95
30489537--30489710	47	3.5	49	91	5	271	30	27	16	25	1.97
30490942--30491038	48	2.0	48	87	0	140	23	22	7	46	1.77
30491368--30491473	54	2.0	54	84	3	142	18	31	20	29	1.97
30493057--30493089	13	2.5	13	86	13	50	33	21	0	45	1.52
30493505--30493540	14	2.6	14	91	4	56	0	22	2	75	0.94
30495615--30495642	14	2.0	14	100	0	56	42	14	7	35	1.73
30497440--30497625	51	3.7	51	76	4	180	30	25	17	25	1.97
30499742--30500038	152	1.9	153	97	0	569	32	24	13	28	1.93
30500297--30500374	39	2.0	39	94	0	138	26	26	16	29	1.97
30501669--30501769	48	2.1	47	89	7	150	23	23	8	43	1.82
30513493--30513528	17	2.1	18	89	5	56	8	22	5	63	1.43
30522140--30522164	5	5.0	5	100	0	50	40	20	0	40	1.52
30524943--30525009	34	1.9	35	87	3	100	32	8	13	44	1.75
30526179--30526212	16	2.1	16	94	0	59	8	17	2	70	1.25
30530315--30530362	11	4.4	11	78	19	55	50	0	4	45	1.21
30530528--30530567	20	2.0	20	95	0	71	35	17	10	37	1.83
30531756--30531847	22	4.2	22	86	5	105	30	28	0	41	1.56
30531756--30531847	44	2.1	44	84	8	116	30	28	0	41	1.56
30531797--30531896	52	1.9	52	82	11	125	31	33	0	36	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30531849--30531890	22	1.9	22	90	0	66	33	33	0	33	1.58
30534258--30534347	23	3.8	24	73	7	76	42	25	0	32	1.55
30534341--30534587	28	9.4	28	86	8	292	46	23	0	29	1.52
30534362--30534608	23	9.7	23	79	16	183	47	23	0	29	1.52
30534341--30534608	51	5.2	48	82	11	245	47	23	0	29	1.52
30534563--30534615	23	2.7	18	72	25	52	45	20	0	33	1.52
30534290--30534608	28	12.0	28	82	10	270	46	23	0	30	1.53
30537749--30538039	85	3.4	85	97	0	528	34	23	18	23	1.97
30537959--30538229	125	2.2	125	82	4	341	33	23	13	30	1.93
30543698--30544793	551	2.0	551	92	0	1827	25	10	20	43	1.83
30552612--30553072	50	9.2	50	99	0	904	30	16	23	29	1.96
30560005--30560050	16	3.0	16	90	6	69	10	32	0	56	1.34
30571874--30571914	15	2.7	15	85	10	57	75	9	12	2	1.13
30572719--30572762	22	2.0	23	90	4	72	56	18	0	25	1.41
30579402--30579443	19	2.2	19	83	8	50	52	4	4	38	1.44
30581522--30581586	22	2.8	23	77	17	64	60	0	3	36	1.13
30582355--30582392	17	2.2	18	85	4	51	47	23	0	28	1.52
30583549--30583690	71	2.0	71	100	0	284	35	14	4	46	1.64
30585799--30585843	22	2.0	22	100	0	90	28	17	13	40	1.88
30585804--30585854	22	2.3	22	89	0	75	29	21	9	39	1.85
30592609--30592783	50	3.4	50	78	7	145	24	29	20	26	1.99
30592646--30592782	50	2.6	52	82	9	170	23	32	20	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30593128--30593188	30	2.1	29	84	3	77	31	19	11	37	1.87
30602659--30602808	30	5.4	30	66	23	112	47	15	12	25	1.79
30602646--30602812	54	3.1	54	99	0	325	49	13	12	24	1.77
30602689--30602778	24	3.5	24	68	21	74	48	15	11	24	1.77
30613088--30613114	6	4.5	6	100	0	54	48	0	0	51	1.00
30613198--30613243	18	2.8	17	78	15	53	30	41	28	0	1.56
30613871--30613971	50	2.0	50	86	3	141	32	15	11	39	1.84
30614911--30614940	13	2.3	13	94	0	51	40	0	3	56	1.16
30616038--30616106	31	2.3	29	81	13	79	50	5	4	39	1.46
30617162--30617225	3	21.0	3	72	15	51	60	1	7	29	1.34

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141