genome.fa.s6.2.7.7.80.10.50.1000.133.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  42799318

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  133  of  141  ( 16820 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39956977--39957066	45	2.0	45	82	6	112	36	23	4	35	1.75
39957730--39957756	6	4.5	6	100	0	54	51	14	18	14	1.76
39966208--39966235	5	5.6	5	100	0	56	17	0	0	82	0.68
39978803--39978838	18	2.0	18	94	0	63	58	0	0	41	0.98
39981909--39981973	7	9.8	6	77	14	58	63	0	1	35	1.04
39981909--39981973	13	4.9	12	75	17	58	63	0	1	35	1.04
39981909--39981963	19	2.9	19	82	15	69	63	0	1	34	1.05
39981907--39981981	7	11.0	7	72	17	52	61	0	1	37	1.05
39982347--39982390	22	2.0	21	83	12	54	50	4	2	43	1.35
39982463--39982495	14	2.4	14	100	0	66	30	0	0	69	0.88
39987424--39987477	27	2.0	27	85	10	74	72	7	11	9	1.29
39988149--39988200	7	7.4	7	95	0	86	30	0	0	69	0.89
39997281--39997310	14	2.1	15	93	6	53	63	3	0	33	1.11
40001674--40001733	24	2.5	24	80	0	75	30	0	5	65	1.14
40004263--40004309	3	15.7	3	82	8	60	59	0	4	36	1.17
40005832--40006097	92	3.0	89	83	5	338	27	24	17	30	1.97
40005863--40006102	44	5.3	44	70	14	159	27	23	17	31	1.97
40006263--40006447	100	1.9	100	89	4	293	24	24	20	30	1.99
40018372--40018421	3	16.7	3	83	8	66	60	0	4	36	1.16
40019714--40019755	20	2.0	22	86	9	61	45	0	0	54	0.99
40019799--40019855	15	3.5	15	71	17	51	49	1	1	47	1.22
40020707--40020929	96	2.3	96	81	3	261	30	34	21	14	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40020706--40020930	48	4.7	48	81	0	234	30	34	20	14	1.92
40026519--40026557	18	2.1	18	86	13	53	46	7	0	46	1.31
40028321--40028346	13	2.0	13	100	0	52	61	0	23	15	1.33
40029128--40029192	28	2.3	28	89	0	94	29	4	4	61	1.36
40031493--40031526	17	2.1	16	88	5	50	58	5	5	29	1.45
40032036--40032114	31	2.5	31	81	10	88	39	29	0	31	1.57
40032201--40032245	19	2.2	21	77	18	51	6	35	0	57	1.25
40039459--40039717	69	3.8	69	77	5	220	38	11	34	15	1.84
40041912--40041945	16	2.1	16	89	10	52	38	5	2	52	1.41
40046832--40046867	19	1.9	18	88	5	54	58	5	5	30	1.44
40048440--40048471	9	3.6	9	91	0	55	40	0	0	59	0.97
40055093--40055133	21	1.9	22	95	5	75	29	12	0	58	1.34
40056027--40056080	26	2.1	26	89	0	81	33	18	20	27	1.96
40062060--40062322	40	6.6	40	88	3	325	24	20	27	26	1.99
40062099--40062357	80	3.3	80	85	3	256	25	20	27	25	1.99
40073857--40073891	18	1.9	18	88	0	52	14	5	8	71	1.29
40074090--40074126	19	2.0	19	89	5	58	27	18	0	54	1.44
40077130--40077181	15	3.2	15	73	19	50	44	0	1	53	1.11
40077217--40077267	17	2.9	18	74	8	52	60	1	0	37	1.08
40082030--40082093	26	2.6	24	74	13	67	45	1	0	53	1.10
40082025--40082093	25	2.7	26	75	18	74	44	1	0	53	1.09
40085876--40085902	3	9.0	3	100	0	54	0	33	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40091632--40091689	9	6.4	9	85	0	62	39	24	10	25	1.87
40091854--40091908	27	2.0	27	96	0	101	38	1	25	34	1.67
40091911--40091988	38	2.0	39	95	2	140	17	2	28	51	1.59
40091969--40091993	13	1.9	13	100	0	50	12	0	48	40	1.40
40093112--40093176	32	2.0	32	90	0	103	16	18	21	43	1.88
40093540--40093573	4	8.0	4	90	9	50	23	0	2	73	0.97
40093523--40093582	22	2.7	22	73	19	61	26	0	6	66	1.16
40099521--40099584	19	3.3	19	89	8	101	39	9	14	37	1.78
40099522--40099597	21	3.7	21	92	3	120	40	10	11	36	1.76
40099589--40099633	21	2.0	23	83	8	58	37	4	13	44	1.64
40099791--40099829	19	2.0	21	85	10	55	15	10	5	69	1.34
40100051--40100090	3	13.3	3	84	10	55	32	0	0	67	0.91
40100035--40100089	15	3.7	15	74	16	53	30	0	1	67	1.01
40100037--40100088	12	4.1	12	80	14	52	28	0	1	69	0.99
40106704--40106743	17	2.4	17	91	0	62	72	2	15	10	1.21
40106706--40106750	8	5.6	8	79	10	56	73	2	13	11	1.19
40108182--40108376	44	4.4	44	65	12	112	31	19	23	26	1.98
40108015--40108412	132	3.0	132	92	1	647	30	19	24	24	1.98
40108698--40108754	21	2.7	21	86	0	78	40	7	15	36	1.75
40108948--40108986	19	2.0	21	85	10	55	15	10	5	69	1.34
40109210--40109252	3	14.3	3	90	9	70	34	0	0	65	0.93
40109510--40109625	51	2.3	52	80	7	132	31	6	6	56	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40117753--40117861	45	2.6	43	82	10	136	33	4	29	32	1.78
40117996--40118037	15	2.9	15	82	10	52	52	0	0	47	1.00
40118304--40118356	27	2.1	27	82	10	67	43	0	0	56	0.99
40123064--40123117	20	2.6	21	85	5	74	37	7	7	48	1.59
40123974--40124148	41	4.3	41	94	0	287	25	26	21	27	1.99
40124916--40124966	12	4.2	12	76	14	50	43	7	3	45	1.51
40127185--40127422	121	2.0	121	94	0	422	28	23	14	33	1.94
40131301--40131414	41	2.8	41	80	1	138	26	24	20	28	1.99
40131879--40131989	41	2.7	41	95	0	195	21	20	27	29	1.98
40132282--40132320	15	2.6	15	91	0	60	25	0	43	30	1.55
40132589--40132629	14	2.9	14	82	13	57	24	0	43	31	1.54
40132907--40134913	241	8.3	241	96	1	3522	46	13	13	26	1.80
40134702--40135126	212	2.0	213	95	0	762	47	12	13	26	1.79
40135230--40135341	55	2.0	55	98	0	215	33	19	16	30	1.95
40137582--40137770	95	2.0	94	90	1	297	13	25	16	44	1.84
40139066--40139355	43	6.7	43	84	8	245	29	16	22	32	1.96
40139083--40139314	129	1.8	128	83	4	306	28	15	22	32	1.95
40139083--40139355	86	3.2	86	83	2	325	28	16	22	32	1.96
40139066--40139355	129	2.2	129	78	4	300	29	16	22	32	1.96
40139443--40139486	22	2.0	22	81	0	52	47	25	15	11	1.79
40151268--40151303	17	2.1	17	100	0	72	25	11	5	58	1.54
40152960--40153053	45	2.1	45	87	0	134	32	22	18	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40153055--40153176	51	2.4	51	85	0	163	33	28	15	22	1.94
40156647--40156689	19	2.2	20	87	4	61	55	11	11	20	1.66
40158769--40158845	11	6.9	10	71	20	55	29	2	2	64	1.20
40158857--40158903	20	2.3	20	85	7	60	38	0	8	53	1.32
40158857--40158908	19	2.7	19	82	8	61	34	0	7	57	1.27
40167145--40167475	108	3.1	107	86	5	465	32	16	16	33	1.92
40167696--40167729	15	2.3	15	90	10	52	70	5	0	23	1.09
40168969--40169001	15	2.2	15	89	10	50	0	9	9	81	0.87
40171708--40171751	17	2.6	17	96	0	79	15	31	31	20	1.94
40177754--40177793	13	3.1	13	85	0	62	35	25	7	32	1.84
40178863--40178914	26	2.0	26	100	0	104	38	11	30	19	1.87
40182192--40182229	16	2.3	17	90	4	60	50	0	10	39	1.37
40189077--40189110	4	8.8	4	93	6	61	20	0	0	79	0.73
40189715--40189752	6	6.7	6	93	3	53	76	0	23	0	0.79
40189715--40189761	6	7.8	6	90	4	51	74	0	25	0	0.82
40189791--40189911	33	3.7	32	83	7	147	54	5	29	9	1.57
40189791--40189859	17	4.2	15	73	26	52	57	7	26	8	1.54
40195406--40195430	2	12.5	2	100	0	50	48	0	0	52	1.00
40201177--40201236	30	2.0	30	90	0	93	28	36	8	26	1.85
40206842--40206893	27	1.9	27	100	0	104	23	3	15	57	1.54
40210039--40210090	16	3.0	18	78	16	65	30	1	3	63	1.23
40211072--40211125	27	2.0	27	85	3	74	50	3	9	37	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40215657--40215697	21	2.0	21	81	18	50	31	19	26	21	1.97
40231527--40231558	17	1.9	16	93	6	55	46	0	0	53	1.00
40231668--40231713	21	2.2	21	92	0	74	52	13	6	28	1.65
40237095--40237119	10	2.5	10	100	0	50	8	20	8	64	1.46
40244665--40244700	14	2.6	14	95	0	63	72	0	11	16	1.12
40245044--40245076	17	1.9	17	88	11	50	60	0	0	39	0.97
40245624--40245663	13	3.2	12	89	3	53	37	2	0	60	1.11
40246438--40246468	16	1.9	16	100	0	62	45	0	9	45	1.36
40251816--40251866	19	2.6	20	78	6	59	47	11	7	33	1.69
40251806--40251863	19	3.0	20	77	10	57	44	13	10	31	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141