genome.fa.s6.2.7.7.80.10.50.1000.113.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  42799318

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  113  of  141  ( 16820 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33117223--33117274	23	2.2	24	82	3	61	44	1	21	32	1.63
33124303--33124339	16	2.2	17	86	13	51	70	5	2	21	1.20
33124378--33124425	22	2.2	22	84	0	60	45	2	25	27	1.64
33125480--33125607	63	2.0	64	98	1	249	21	6	28	42	1.77
33137883--33137923	19	2.2	19	95	0	73	34	4	17	43	1.70
33137961--33138042	41	2.0	41	90	4	130	30	6	12	51	1.63
33141492--33141530	15	2.4	16	83	8	53	58	0	2	38	1.12
33141697--33141728	16	2.0	16	93	0	55	34	0	6	59	1.23
33143443--33143503	31	2.0	31	96	0	113	36	18	6	39	1.76
33148407--33148440	12	2.9	11	84	16	50	8	8	14	67	1.41
33166713--33166752	17	2.4	17	87	4	55	47	0	7	45	1.31
33174749--33174775	12	2.2	12	100	0	54	51	0	0	48	1.00
33175638--33175705	28	2.4	28	85	2	100	16	16	23	44	1.86
33185699--33185729	14	2.3	13	94	5	53	51	0	3	45	1.17
33185977--33186018	20	2.0	20	86	9	57	38	4	21	35	1.75
33191432--33191488	30	1.9	29	85	3	78	24	15	24	35	1.95
33191541--33191779	29	8.2	29	78	3	187	23	15	22	38	1.93
33191533--33191768	87	2.7	86	77	7	228	25	15	21	37	1.92
33191564--33191779	87	2.5	88	80	3	231	25	15	22	37	1.93
33194250--33194346	25	3.9	25	81	0	113	30	20	20	27	1.98
33194250--33194366	25	4.7	24	76	12	85	31	22	19	26	1.98
33194247--33194366	50	2.4	50	77	5	136	31	23	19	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33201909--33202003	25	3.8	25	76	5	86	27	22	21	29	1.99
33203141--33203169	12	2.3	13	94	5	51	24	41	27	6	1.80
33211387--33211425	9	4.1	9	81	12	51	2	2	12	82	0.89
33213859--33213907	19	2.7	18	84	9	55	30	2	8	59	1.38
33228750--33228789	18	2.2	18	95	0	71	42	17	12	27	1.85
33228728--33228819	43	2.1	43	88	4	132	38	18	14	29	1.90
33228766--33228814	25	2.0	25	87	0	71	44	16	12	26	1.82
33232203--33232361	43	3.7	43	80	4	178	30	25	13	29	1.94
33233205--33233238	18	1.9	17	88	5	50	29	14	0	55	1.40
33235010--33235605	309	1.9	312	82	7	748	39	10	13	37	1.79
33236260--33236303	20	2.3	19	84	4	52	22	13	4	59	1.53
33245145--33245169	12	2.1	12	100	0	50	24	36	24	16	1.94
33245331--33245406	9	8.4	9	88	0	107	44	22	7	25	1.79
33248920--33249011	28	3.3	28	72	11	80	19	25	16	39	1.92
33248933--33249066	28	4.8	28	74	0	106	19	24	14	41	1.88
33249226--33249376	58	2.6	58	77	4	142	23	29	9	37	1.86
33250494--33250596	19	5.8	18	74	18	83	65	0	0	33	1.06
33250509--33250552	9	4.9	9	80	8	54	65	0	0	34	0.93
33250509--33250552	17	2.4	18	88	7	63	65	0	0	34	0.93
33250521--33250589	29	2.3	29	82	7	75	66	0	0	33	0.92
33250432--33250594	69	2.4	70	82	6	190	62	1	1	33	1.16
33250502--33250604	16	5.7	19	75	22	73	64	0	0	33	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33250621--33250677	28	2.1	28	90	3	89	61	10	0	28	1.29
33250855--33250956	30	3.4	29	71	20	84	26	4	1	66	1.22
33255982--33256119	71	1.9	71	98	0	267	44	3	17	34	1.66
33257829--33258010	47	3.7	47	82	15	222	32	7	28	31	1.84
33257893--33258009	57	2.1	57	95	0	207	32	5	28	33	1.81
33258179--33258256	37	2.1	36	88	2	111	24	19	30	25	1.98
33288471--33288700	116	2.0	116	94	0	406	42	12	13	30	1.82
33295637--33295727	46	2.0	45	89	2	137	16	19	28	35	1.94
33304535--33304631	43	2.3	43	88	0	140	26	29	20	22	1.99
33307293--33307371	40	2.0	40	97	0	149	25	18	11	44	1.83
33310395--33310439	14	3.1	14	83	3	54	80	0	4	15	0.87
33310795--33310832	17	2.2	17	90	0	58	76	2	7	13	1.11
33322320--33322479	80	2.0	80	97	0	302	31	25	17	25	1.97
33323517--33323586	27	2.6	26	93	2	86	31	28	11	28	1.92
33323517--33323614	28	3.5	28	88	2	126	31	28	12	27	1.93
33324059--33324088	14	2.1	14	100	0	60	43	0	6	50	1.28
33329543--33329582	19	2.0	20	85	4	55	50	10	22	17	1.76
33329761--33329810	21	2.3	21	93	3	82	46	6	16	32	1.71
33333325--33333365	22	2.0	20	85	9	55	14	4	9	70	1.30
33337131--33337156	4	6.5	4	100	0	52	76	0	0	23	0.78
33337190--33337251	22	2.8	22	92	4	99	24	56	6	12	1.60
33337472--33337528	17	3.1	19	78	14	66	31	0	7	61	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33337613--33337644	14	2.3	14	94	0	55	46	6	0	46	1.27
33349751--33351095	132	10.2	132	92	0	2127	27	16	25	30	1.97
33351061--33351365	136	2.3	135	95	1	540	26	21	22	28	1.99
33351504--33351674	40	4.2	40	76	7	137	32	19	20	26	1.97
33351528--33351679	40	3.8	40	81	3	196	30	21	20	26	1.98
33351526--33351695	82	2.1	83	88	1	261	34	21	18	25	1.96
33351527--33351695	40	4.1	42	77	6	157	33	21	18	26	1.96
33352022--33352083	22	2.8	22	92	4	99	24	56	6	12	1.60
33352165--33352213	22	2.2	23	85	3	64	12	2	28	57	1.46
33352164--33352228	23	2.9	23	79	9	62	10	1	27	60	1.39
33352559--33352644	3	29.3	3	73	19	60	29	3	1	66	1.16
33352559--33352648	18	4.7	18	77	13	83	30	3	1	65	1.16
33352850--33352906	17	3.1	19	78	14	66	31	0	7	61	1.23
33352991--33353020	12	2.5	12	94	0	51	46	6	0	46	1.29
33358159--33358425	93	2.9	93	81	9	280	23	28	20	28	1.99
33358159--33358425	48	5.7	47	76	12	201	23	28	20	28	1.99
33361306--33361420	27	4.1	28	79	7	94	35	21	24	18	1.95
33361331--33361420	28	3.2	28	81	7	112	33	23	24	18	1.97
33361306--33361420	55	2.1	56	85	8	155	35	21	24	18	1.95
33361526--33361590	28	2.3	28	92	5	105	29	7	29	33	1.85
33361839--33361880	16	2.6	16	88	0	66	9	26	21	42	1.83
33361838--33361884	8	5.9	8	84	0	58	8	23	21	46	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33369226--33369306	27	2.9	28	78	7	85	35	20	22	20	1.96
33369201--33369306	55	1.9	55	86	7	153	37	19	22	19	1.94
33369207--33369307	28	3.6	28	79	4	114	34	20	23	20	1.96
33369412--33369476	28	2.3	28	92	5	105	29	7	29	33	1.85
33369723--33369770	8	6.0	8	80	9	62	6	22	22	47	1.73
33369723--33369766	16	2.8	16	89	0	70	6	25	25	43	1.79
33374625--33375267	47	13.5	46	84	7	435	34	16	24	24	1.95
33374625--33375278	243	2.7	235	88	5	892	34	16	24	24	1.95
33374714--33375278	47	11.9	47	85	8	714	34	15	24	24	1.95
33382341--33382459	54	2.2	54	83	0	148	21	31	19	26	1.97
33391690--33391714	9	2.8	9	100	0	50	64	0	12	24	1.27
33394050--33394076	14	1.9	14	100	0	54	66	0	14	18	1.25
33394556--33394612	22	2.5	22	81	13	64	42	3	1	52	1.28
33396402--33396432	12	2.6	12	94	0	53	70	3	25	0	1.02
33406692--33406716	3	8.3	3	100	0	50	0	0	32	68	0.90
33406736--33406760	6	4.2	6	100	0	50	16	0	52	32	1.44
33406935--33406977	3	14.3	3	85	0	59	0	4	30	65	1.13
33406987--33407018	3	10.7	3	100	0	64	0	31	34	34	1.58
33410043--33410280	50	4.7	50	77	3	199	21	26	21	29	1.99
33420246--33420279	16	2.1	16	88	0	50	29	11	23	35	1.90
33420315--33420366	25	2.0	26	88	3	79	42	9	5	42	1.61
33420487--33420524	16	2.4	16	100	0	76	50	5	5	39	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33423296--33423416	63	1.9	62	83	6	154	29	6	29	33	1.83
33427537--33427565	12	2.5	12	94	5	51	62	0	6	31	1.22
33429982--33430127	75	1.9	75	85	0	202	28	19	25	27	1.99
33433082--33433150	31	2.2	31	94	0	120	33	11	11	43	1.77
33433374--33433713	43	8.0	43	80	4	309	29	22	19	28	1.98
33433416--33433718	85	3.6	85	80	5	317	29	21	20	29	1.98
33433416--33433726	43	7.3	43	80	4	317	29	21	20	28	1.98
33434002--33434047	21	2.2	21	88	0	65	4	43	17	34	1.69
33439461--33439627	47	3.6	47	95	0	298	34	0	20	44	1.52
33439408--33439688	9	31.0	9	69	15	152	35	1	19	44	1.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141