genome.fa.s6.2.7.7.80.10.50.1000.105.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  42799318

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  105  of  141  ( 16820 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29975664--29975707	21	2.1	21	95	0	79	15	6	29	47	1.72
29994334--29994373	21	1.9	21	85	10	55	70	10	10	10	1.36
29998095--29998148	27	2.0	27	88	0	81	35	9	9	46	1.68
30004667--30004898	123	1.9	124	86	4	335	26	25	18	30	1.98
30004672--30004900	41	5.6	40	82	5	271	25	25	19	30	1.98
30004669--30004900	82	2.8	82	84	2	331	25	25	18	30	1.98
30012709--30012929	41	5.4	41	88	0	325	23	28	19	28	1.98
30012931--30013064	67	2.0	66	94	1	232	35	20	9	33	1.85
30013427--30013570	78	1.8	78	82	8	186	42	13	4	40	1.63
30014755--30014884	65	2.0	65	93	1	224	31	20	10	37	1.86
30015733--30015781	17	2.7	18	84	9	64	79	2	4	14	0.97
30015988--30016113	60	2.1	60	88	2	191	50	12	15	21	1.78
30024235--30024286	23	2.3	23	79	0	59	13	11	7	67	1.42
30024657--30024717	30	2.0	30	96	0	113	52	19	6	21	1.68
30028596--30029220	218	2.9	211	88	5	927	34	10	16	38	1.82
30032238--30032405	62	2.7	62	95	0	309	36	6	10	47	1.63
30032348--30032376	14	2.1	14	100	0	58	51	6	0	41	1.28
30032685--30032778	33	2.9	33	84	7	129	23	14	42	19	1.88
30032899--30032928	12	2.5	12	100	0	60	6	33	43	16	1.74
30033577--30033607	14	2.2	14	94	0	53	45	6	9	38	1.63
30037254--30037315	7	9.0	7	85	3	63	46	33	0	19	1.50
30037256--30037333	41	2.0	41	87	5	115	47	34	1	16	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30037264--30037347	20	4.2	21	71	14	61	47	35	1	15	1.53
30037400--30037467	21	3.3	21	69	19	70	23	4	26	45	1.71
30037393--30037477	41	2.1	41	93	0	143	20	4	31	43	1.72
30042067--30042109	9	4.7	9	77	5	50	20	41	2	34	1.65
30048341--30048373	8	4.0	8	96	4	57	39	24	0	36	1.56
30051024--30051109	43	2.0	43	97	0	163	41	9	19	29	1.83
30062767--30063122	188	1.9	188	83	3	466	30	13	18	36	1.90
30063080--30063154	29	2.6	29	78	0	78	20	18	16	45	1.86
30063940--30063973	18	2.0	17	88	11	52	64	2	5	26	1.30
30065216--30065379	81	2.0	81	97	0	310	35	15	9	40	1.79
30065602--30065793	96	2.0	96	98	0	375	33	21	15	29	1.94
30066300--30066340	6	7.3	6	84	10	52	0	14	0	85	0.60
30066300--30066341	17	2.5	18	85	14	63	0	16	0	83	0.65
30066298--30066341	21	2.1	21	87	8	63	0	18	0	81	0.68
30067605--30067688	28	3.0	28	89	0	132	32	22	21	23	1.98
30067797--30067867	26	2.7	26	76	4	72	30	22	25	21	1.98
30067912--30067951	20	2.0	21	85	14	57	45	12	10	32	1.75
30068071--30068199	27	4.8	27	85	3	145	16	24	20	38	1.92
30068039--30068213	54	3.2	52	80	7	170	17	24	17	41	1.90
30068037--30068234	81	2.4	81	79	8	215	18	23	18	40	1.91
30068037--30068234	54	3.7	53	78	6	137	18	23	18	40	1.91
30077274--30077321	24	2.0	24	84	8	62	56	2	27	14	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30083976--30084009	12	2.8	12	95	0	59	8	17	44	29	1.79
30085098--30085145	21	2.3	20	78	3	51	45	18	2	33	1.61
30091941--30092088	74	2.0	74	87	0	215	34	16	4	44	1.68
30098088--30098133	23	2.0	23	86	0	65	47	13	8	30	1.72
30100634--30100674	19	2.4	17	81	18	50	51	2	0	46	1.14
30100643--30100682	19	2.1	19	100	0	80	52	5	0	42	1.23
30108893--30108954	26	2.4	26	88	0	88	35	11	14	38	1.82
30115920--30115986	35	1.9	35	96	3	127	31	20	25	22	1.98
30115921--30115995	35	2.2	34	90	2	114	34	22	21	21	1.97
30118824--30118928	40	2.6	41	77	10	117	16	18	28	37	1.92
30122941--30122980	21	1.9	21	85	10	55	27	20	27	25	1.99
30126865--30126915	23	2.2	24	82	3	59	27	25	13	33	1.94
30141264--30141490	113	2.0	113	99	0	445	36	17	15	29	1.91
30152239--30152289	23	2.2	23	89	6	77	29	11	17	41	1.85
30152534--30152807	141	1.9	141	98	0	530	25	25	26	22	2.00
30173101--30173177	29	2.6	30	80	13	88	57	0	1	41	1.07
30173144--30173187	19	2.4	19	92	3	72	63	0	2	34	1.07
30173144--30173192	18	2.7	18	87	9	73	63	0	2	34	1.06
30173837--30173870	10	3.2	10	88	12	50	2	11	0	85	0.71
30173844--30173883	21	2.0	21	90	5	64	2	15	5	77	1.04
30179707--30179813	33	3.3	32	75	16	105	71	9	9	9	1.30
30180173--30180225	20	2.8	20	83	10	69	71	0	13	15	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30181441--30182207	87	8.8	87	91	0	1165	29	22	23	24	1.99
30182288--30182403	44	2.7	43	72	10	112	31	21	23	23	1.98
30182492--30182720	44	5.0	44	71	15	167	31	17	22	27	1.97
30182448--30182770	142	2.3	142	95	0	574	32	17	21	28	1.96
30182648--30182732	44	2.0	44	83	2	109	31	18	21	28	1.97
30182843--30183029	101	1.9	101	83	0	248	33	21	18	25	1.96
30183769--30183825	17	3.0	20	75	21	59	0	17	7	75	1.02
30183780--30183824	10	4.3	11	83	11	58	0	15	4	80	0.87
30183779--30183813	17	2.1	16	94	5	61	0	14	0	85	0.59
30192832--30192869	20	1.9	20	88	0	58	26	0	2	71	1.00
30192939--30193010	22	3.7	19	82	15	85	29	5	2	62	1.32
30193022--30193058	10	3.5	11	82	17	51	40	5	0	54	1.24
30193022--30193064	19	2.1	21	87	8	63	37	4	0	58	1.19
30200465--30200705	35	6.7	35	82	7	268	34	16	24	25	1.95
30200465--30200678	73	2.9	73	90	0	329	35	15	23	25	1.94
30201330--30201379	21	2.4	21	100	0	100	62	16	12	10	1.55
30203520--30203571	24	2.2	24	92	0	86	36	3	7	51	1.49
30208937--30208996	16	3.7	16	71	20	61	30	11	25	33	1.91
30230401--30230440	18	2.2	19	95	4	73	52	5	0	42	1.23
30247349--30247409	30	2.0	30	100	0	122	26	9	29	34	1.88
30252111--30252161	22	2.4	21	76	3	57	68	0	1	29	1.00
30267365--30267403	21	1.9	21	85	15	55	38	17	0	43	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30270789--30270828	16	2.5	15	84	11	53	15	2	37	45	1.59
30271318--30271664	44	7.9	44	72	9	226	28	20	19	31	1.97
30271185--30271838	219	3.0	219	90	3	1021	28	19	18	32	1.96
30271994--30272953	128	7.5	128	91	0	1418	25	23	18	31	1.98
30274227--30274255	7	4.3	7	91	8	51	17	17	0	65	1.27
30274230--30274265	13	2.8	13	91	4	56	11	16	0	72	1.12
30286348--30286480	43	3.1	43	78	2	126	31	26	14	27	1.95
30297843--30297899	10	5.6	10	81	8	53	73	3	3	19	1.12
30297841--30297899	19	3.1	18	77	20	57	72	3	3	20	1.13
30304709--30304766	27	2.1	27	93	0	98	53	12	18	15	1.72
30306825--30306869	22	2.1	21	83	4	54	42	13	0	44	1.43
30313147--30313228	36	2.3	36	82	0	92	26	4	21	46	1.72
30313149--30313228	18	4.4	18	78	6	72	27	5	21	46	1.72
30313847--30313912	17	3.9	17	83	0	87	36	6	13	43	1.69
30313845--30313924	34	2.4	33	81	6	88	36	7	13	42	1.73
30316186--30316238	26	2.0	26	89	7	81	37	0	3	58	1.16
30319030--30319075	18	2.8	18	84	15	64	0	30	41	28	1.56
30320851--30320893	13	3.1	14	84	12	54	60	0	0	39	0.97
30330260--30330317	22	2.7	22	81	7	57	36	1	17	44	1.59
30330270--30330314	22	2.0	22	86	4	63	33	2	15	48	1.57
30330479--30330517	19	2.0	21	85	10	55	15	10	5	69	1.34
30331026--30331141	51	2.3	52	80	7	132	31	6	6	56	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30332220--30332282	30	2.1	31	93	3	110	50	9	11	28	1.69
30335859--30335984	62	2.0	61	84	1	162	26	27	27	18	1.98
30336244--30336391	79	1.9	79	81	2	181	26	15	18	39	1.90
30337791--30337891	31	3.4	29	73	17	82	45	6	5	41	1.55
30337791--30337871	31	2.6	32	82	5	96	44	6	6	43	1.54
30338384--30338451	33	2.0	35	88	11	106	48	1	1	48	1.19
30341588--30341616	9	3.0	10	90	10	51	58	0	20	20	1.39
30343219--30343421	91	2.3	89	83	3	237	29	20	15	34	1.93
30348931--30349025	29	3.1	29	67	21	75	35	7	2	54	1.40
30349093--30349140	22	2.2	22	92	3	80	54	4	0	41	1.20

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141