genome.fa.s6.2.7.7.80.10.50.1000.38.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  42799318

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  38  of  141  ( 16820 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11408840--11408919	21	4.0	21	85	9	114	38	10	15	36	1.80
11408833--11408918	40	2.2	36	84	15	118	40	9	15	34	1.79
11409905--11409992	23	3.6	23	78	13	79	36	1	6	55	1.34
11409906--11409992	27	3.5	25	80	10	90	35	1	6	56	1.34
11416259--11416532	51	5.4	51	88	0	388	32	14	24	28	1.95
11416208--11416532	102	3.1	102	90	3	472	32	14	24	28	1.95
11420359--11420567	115	1.8	115	100	0	418	40	6	9	44	1.62
11424597--11424684	44	2.0	45	82	6	110	56	1	1	40	1.14
11426550--11426575	4	6.5	4	100	0	52	23	23	0	53	1.46
11432159--11432397	113	2.1	114	85	3	322	27	4	19	48	1.67
11432718--11432779	32	1.9	32	96	0	115	32	12	17	37	1.88
11455422--11455470	21	2.4	20	86	6	71	28	4	0	67	1.09
11455666--11455725	18	3.4	17	76	13	59	50	3	8	38	1.49
11456626--11456712	43	2.0	45	84	8	117	32	4	25	37	1.76
11456904--11457091	61	3.1	61	68	21	169	48	5	3	42	1.45
11456865--11457151	120	2.4	120	93	1	495	49	4	3	43	1.37
11457826--11457893	21	3.2	20	69	19	57	41	23	11	23	1.87
11457824--11457891	22	3.1	21	68	19	59	42	23	10	23	1.84
11458623--11458655	17	1.9	17	100	0	66	54	18	15	12	1.71
11461457--11461488	7	4.7	7	96	3	57	15	28	0	56	1.40
11462586--11462717	41	3.2	41	79	6	144	39	25	18	16	1.91
11463938--11464006	11	6.3	11	75	11	61	33	1	2	62	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11467434--11467529	45	2.1	45	90	0	147	19	21	17	40	1.91
11467449--11467610	45	3.6	44	82	5	164	24	20	14	40	1.90
11467507--11467625	45	2.6	45	82	5	143	26	21	13	39	1.90
11467412--11467627	90	2.4	90	76	8	215	23	20	15	40	1.90
11470395--11470443	6	8.3	6	82	13	50	2	18	0	79	0.83
11470397--11470440	5	8.8	5	85	9	63	2	15	0	81	0.78
11473929--11473975	21	2.2	21	84	0	58	27	8	34	29	1.87
11480505--11480544	21	1.9	22	85	10	57	30	2	2	65	1.19
11482612--11482658	24	2.0	24	82	0	58	17	31	21	29	1.96
11495553--11495592	20	2.0	20	90	0	62	27	47	2	22	1.64
11495564--11495616	21	2.6	21	84	3	63	35	45	0	18	1.50
11495611--11495648	14	2.7	15	84	12	53	42	28	2	26	1.69
11495804--11495851	25	1.9	25	91	0	78	60	4	0	35	1.16
11495892--11495948	14	3.9	14	83	4	60	31	40	0	28	1.57
11495889--11495999	43	2.6	43	74	5	107	35	38	0	26	1.57
11495964--11495998	15	2.4	14	86	9	52	34	40	0	25	1.56
11497811--11497951	40	3.5	40	91	0	219	30	19	21	28	1.98
11498226--11498256	2	15.5	2	93	0	53	45	0	0	54	0.99
11499363--11499512	41	3.7	41	80	0	165	27	30	17	24	1.97
11504300--11504333	16	2.1	17	88	5	52	52	8	0	38	1.33
11509235--11509339	24	4.3	25	80	8	117	29	21	29	19	1.97
11509247--11509339	49	1.9	48	86	2	132	29	21	30	19	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11509250--11509353	48	2.1	49	82	5	122	30	21	28	19	1.97
11514628--11514681	24	2.4	21	77	20	56	74	16	3	5	1.16
11515888--11515931	18	2.3	20	85	14	58	31	6	0	61	1.22
11515888--11516537	300	2.2	300	83	5	814	35	13	10	40	1.80
11520002--11520402	36	10.0	36	75	19	343	36	14	20	28	1.92
11519966--11520445	82	5.9	82	97	0	885	36	13	21	28	1.92
11525684--11525788	51	2.1	51	94	0	183	33	28	11	26	1.91
11526648--11527076	117	3.7	117	98	0	824	39	22	11	26	1.88
11527270--11527317	16	2.9	16	87	3	69	35	2	22	39	1.66
11529435--11529464	15	2.1	15	93	6	53	10	13	0	76	1.01
11529800--11529864	28	2.3	27	77	12	69	36	9	1	52	1.43
11542459--11542740	129	2.2	130	87	1	397	32	19	18	29	1.96
11542375--11542837	46	10.9	42	68	12	164	32	19	19	28	1.96
11544594--11544658	28	2.3	27	77	12	69	36	9	1	52	1.43
11549158--11549207	25	2.0	25	84	0	64	18	0	6	76	0.99
11550186--11550248	16	3.9	16	81	6	65	80	3	11	4	0.97
11550203--11550248	11	4.2	11	80	0	56	84	2	10	2	0.79
11550242--11550333	43	2.1	43	95	0	166	42	5	9	42	1.61
11560640--11560678	20	2.0	20	100	0	78	25	7	25	41	1.82
11564216--11564259	21	2.1	21	83	8	54	31	0	6	61	1.22
11564289--11564323	18	2.0	17	88	5	52	45	0	0	54	0.99
11572400--11572467	16	4.2	16	96	0	127	26	0	35	38	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11572703--11572737	18	2.0	17	88	5	52	54	0	0	45	0.99
11572823--11572857	18	2.0	17	88	5	52	54	0	0	45	0.99
11572686--11572982	120	2.5	120	100	0	594	48	4	2	44	1.35
11572943--11572977	18	2.0	17	88	5	52	54	0	0	45	0.99
11576807--11576864	23	2.7	21	79	10	71	18	31	3	46	1.66
11576808--11576864	11	5.3	10	76	15	51	19	31	3	45	1.67
11578671--11578713	18	2.4	18	88	0	59	18	27	9	44	1.80
11582158--11582444	126	2.3	126	85	1	389	28	20	18	32	1.96
11582460--11582776	96	3.3	96	88	1	467	40	17	2	38	1.65
11582933--11583012	40	2.0	39	83	9	99	22	28	25	23	1.99
11583544--11583639	20	4.7	20	73	17	81	56	6	0	37	1.25
11583544--11583682	19	6.8	21	68	23	75	56	5	0	37	1.26
11583544--11583645	43	2.4	43	78	15	108	55	5	0	38	1.24
11584589--11584658	33	2.1	33	89	0	104	18	32	14	34	1.91
11585550--11585646	26	3.5	26	75	17	79	32	16	7	43	1.75
11586484--11586614	66	2.0	66	98	0	253	28	12	29	29	1.94
11588481--11588549	22	3.0	22	75	20	63	52	1	1	44	1.19
11592026--11592210	43	4.3	43	81	2	210	31	31	15	20	1.94
11592026--11592190	86	1.9	86	87	2	242	30	31	15	21	1.95
11592026--11592210	86	2.2	85	85	5	239	31	31	15	20	1.94
11595957--11596002	23	1.9	24	86	8	67	34	0	2	63	1.07
11596413--11596529	7	16.7	7	71	18	66	39	38	0	22	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11596440--11596472	15	2.2	15	94	0	57	42	33	0	24	1.55
11596413--11596532	21	5.8	20	73	17	84	38	39	0	22	1.54
11596498--11596535	14	2.7	15	88	12	62	42	31	0	26	1.56
11596783--11596936	7	21.7	7	75	10	116	47	32	0	20	1.50
11596783--11596936	14	10.9	14	78	8	141	47	32	0	20	1.50
11597111--11597372	41	6.4	41	78	9	248	32	27	18	22	1.97
11597470--11597585	40	2.9	40	85	5	164	21	25	22	31	1.98
11626240--11626395	43	3.7	41	77	11	165	23	16	28	30	1.96
11634571--11634603	16	2.1	16	94	0	57	33	0	39	27	1.57
11635867--11635950	18	4.7	18	77	7	91	25	27	0	47	1.52
11635869--11635959	9	10.1	9	71	0	74	25	26	0	48	1.52
11635905--11635956	18	2.9	18	94	0	86	25	26	0	48	1.52
11641282--11641382	44	2.3	43	85	10	116	48	16	10	23	1.78
11642082--11642542	100	4.6	100	84	4	509	23	23	21	31	1.99
11642114--11642543	50	8.6	50	72	3	292	23	23	22	31	1.98
11642741--11642962	88	2.5	88	91	1	356	24	25	21	29	1.99
11644232--11644286	15	3.6	15	80	11	67	14	16	0	69	1.20
11651194--11651226	14	2.2	15	89	10	50	57	24	0	18	1.40
11658397--11658422	11	2.4	11	100	0	52	38	7	0	53	1.30
11658430--11658519	30	3.0	30	80	9	103	34	0	0	65	0.93
11658388--11658513	41	3.1	41	85	6	175	33	1	0	65	1.03
11658435--11658526	21	4.4	22	72	12	86	35	0	0	64	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11658486--11658533	21	2.2	20	82	13	60	35	0	4	60	1.16
11663172--11663198	2	13.5	2	100	0	54	51	0	0	48	1.00
11675128--11676281	294	4.0	294	95	2	1993	38	20	8	32	1.83
11681653--11681678	13	2.0	13	100	0	52	15	7	7	69	1.35
11704171--11704736	294	2.0	277	86	6	783	38	19	8	32	1.83
11710108--11710133	13	2.0	13	100	0	52	15	7	7	69	1.35
11737524--11737562	12	3.2	13	85	10	55	64	15	0	20	1.30
11747325--11747584	143	1.8	143	88	1	396	29	20	23	26	1.99
11747646--11747750	44	2.4	45	84	6	126	28	22	22	25	1.99
11748478--11748511	17	2.0	17	88	0	50	5	11	5	76	1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141