genome.fa.s6.2.7.7.80.10.50.1000.137.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  42799318

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  137  of  141  ( 16820 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41155805--41156134	157	2.1	157	96	0	606	44	14	1	39	1.54
41156024--41156073	16	3.4	16	73	21	63	46	18	2	34	1.60
41155805--41156197	157	2.5	157	90	4	564	45	15	2	37	1.58
41156181--41156440	25	10.1	25	71	17	112	45	21	1	31	1.63
41156181--41156429	9	28.8	9	73	15	195	44	22	2	30	1.64
41156161--41156437	71	4.0	68	70	19	173	45	21	2	30	1.64
41156151--41156308	79	2.0	77	84	9	203	46	22	2	29	1.65
41162363--41162635	43	6.4	41	77	12	237	26	19	19	34	1.96
41162382--41162627	128	1.9	129	84	4	327	27	20	20	31	1.97
41162425--41162635	85	2.5	85	83	3	262	27	19	18	34	1.95
41166728--41166768	21	2.0	21	90	0	64	29	21	29	19	1.98
41168674--41168707	16	2.1	16	88	0	50	50	14	17	17	1.79
41169585--41169628	20	2.2	20	84	8	54	31	4	9	54	1.52
41169785--41169814	13	2.3	13	100	0	60	73	0	0	26	0.84
41172712--41172872	54	3.0	54	86	0	232	28	23	15	32	1.95
41180792--41180904	40	2.8	40	91	0	181	30	19	26	23	1.98
41189493--41189645	40	3.8	40	91	0	234	30	20	26	23	1.99
41198061--41198428	40	9.2	40	96	0	664	32	19	26	22	1.98
41202008--41202063	28	2.0	28	96	0	103	17	30	14	37	1.90
41213449--41213532	37	2.3	37	93	0	150	36	15	26	21	1.93
41222696--41222828	66	2.0	66	95	0	239	24	22	22	30	1.99
41225738--41225786	17	2.8	17	75	6	53	55	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41233440--41233901	160	3.0	155	84	5	594	43	4	9	42	1.57
41233746--41233791	21	2.1	23	84	8	60	54	0	6	39	1.26
41244104--41244211	36	3.0	35	78	6	119	24	14	14	46	1.83
41244911--41244958	20	2.4	20	82	6	62	12	4	31	52	1.58
41256778--41256812	17	2.0	18	88	5	54	77	2	20	0	0.90
41257987--41258165	51	3.5	51	78	6	168	23	16	27	31	1.96
41258174--41258260	45	1.9	45	90	0	138	25	16	25	33	1.96
41260783--41260822	16	2.5	16	83	0	53	70	5	2	22	1.19
41261160--41261238	24	3.3	24	82	7	99	21	1	21	55	1.50
41263788--41263867	36	2.2	36	86	0	115	45	12	28	13	1.80
41263809--41263873	18	3.6	18	69	8	60	43	12	30	13	1.81
41263770--41263882	18	6.3	18	66	15	54	43	12	31	12	1.80
41265549--41265704	51	3.1	50	92	0	240	28	25	15	30	1.96
41271406--41271440	18	1.9	18	88	0	52	28	17	11	42	1.83
41281555--41281604	15	3.4	15	77	5	66	62	14	4	20	1.47
41281553--41281610	29	2.0	29	100	0	116	58	13	3	24	1.51
41281743--41281891	72	2.1	72	98	0	289	24	6	14	54	1.63
41284996--41285065	22	3.1	22	70	11	70	38	15	18	27	1.91
41296451--41296510	24	2.5	24	81	2	59	26	31	15	26	1.95
41296878--41296910	17	1.9	17	88	11	50	42	0	12	45	1.41
41297730--41297921	50	3.7	50	80	4	197	27	21	27	23	1.99
41305387--41305629	50	4.8	50	78	7	231	28	20	25	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41307916--41307953	18	2.1	18	100	0	76	55	0	21	23	1.44
41310366--41310404	20	2.0	20	85	5	53	46	0	5	48	1.24
41310399--41310468	37	1.9	36	82	8	88	52	2	2	41	1.31
41317134--41317279	48	3.0	48	79	4	132	28	20	29	21	1.98
41322912--41323017	37	2.9	37	90	2	162	25	22	16	35	1.94
41322980--41323196	52	4.2	52	84	8	293	27	23	14	35	1.93
41323030--41323202	46	3.7	46	84	9	231	28	22	14	34	1.93
41322979--41323202	98	2.3	98	94	0	394	28	23	14	34	1.93
41327590--41327794	48	4.2	48	81	3	241	27	20	28	23	1.99
41332845--41333074	111	2.1	111	91	0	370	43	16	9	29	1.80
41339304--41339413	54	2.0	54	94	0	193	34	25	9	30	1.87
41343950--41344038	46	1.9	46	100	0	178	21	38	13	26	1.91
41346265--41346345	32	2.5	32	95	0	144	37	4	18	39	1.72
41349605--41350046	41	10.6	39	74	9	335	22	17	26	33	1.96
41349645--41350058	84	4.9	84	96	0	711	21	18	26	34	1.96
41351147--41351335	96	2.0	96	97	0	360	26	16	20	35	1.94
41370000--41370093	46	2.0	48	91	4	156	21	14	20	43	1.87
41375135--41375229	48	2.0	48	93	0	163	21	17	20	41	1.91
41392812--41393153	85	4.0	85	99	0	675	31	18	5	44	1.73
41394485--41394662	27	6.6	27	83	3	205	26	15	28	29	1.96
41394486--41394641	82	1.9	81	88	3	233	26	15	28	29	1.96
41394482--41394662	82	2.2	81	83	2	229	27	15	27	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41402548--41402725	27	6.6	27	83	3	205	26	15	28	29	1.96
41402549--41402704	82	1.9	81	88	3	233	26	15	28	29	1.96
41402545--41402725	82	2.2	81	83	2	229	27	15	27	29	1.96
41424214--41424243	12	2.4	13	94	5	53	66	6	6	20	1.38
41434089--41434142	14	3.8	14	78	4	63	1	22	1	74	1.02
41447631--41447712	33	2.4	34	85	2	112	43	23	6	26	1.77
41455211--41455249	13	3.0	13	80	0	51	48	15	0	35	1.45
41458242--41458342	39	2.6	39	80	4	105	29	18	22	28	1.98
41458282--41458485	63	3.2	62	79	4	196	32	22	19	25	1.97
41458323--41458486	63	2.6	63	82	1	204	34	22	18	25	1.96
41469117--41469163	20	2.3	21	79	17	55	70	0	8	21	1.14
41469736--41469782	24	2.0	24	82	0	58	68	12	6	12	1.39
41486665--41486805	40	3.5	40	76	16	132	27	21	26	24	1.99
41491931--41492003	36	2.0	36	100	0	146	19	16	31	32	1.94
41498338--41498560	39	5.7	40	86	7	273	25	22	27	24	2.00
41498338--41498560	79	2.8	81	85	8	282	25	22	27	24	2.00
41498338--41498593	79	3.3	79	82	9	224	26	21	27	24	1.99
41501267--41501442	51	3.5	51	80	7	209	30	27	18	23	1.98
41501257--41501442	99	1.9	102	87	5	281	29	27	19	24	1.98
41506827--41507120	147	2.0	147	100	0	588	25	23	17	32	1.97
41507105--41507193	40	2.2	40	83	0	106	24	28	23	23	2.00
41507146--41507246	40	2.5	40	78	12	109	24	27	21	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41510540--41510730	51	3.8	51	82	8	255	29	28	18	23	1.98
41510538--41510722	101	1.8	102	91	3	311	29	28	18	23	1.98
41510530--41510722	102	1.9	102	89	3	291	29	29	19	22	1.98
41513414--41513464	12	4.2	12	76	0	57	29	7	0	62	1.23
41513414--41513464	24	2.1	24	85	0	66	29	7	0	62	1.23
41513423--41513494	33	2.2	32	80	9	83	30	9	0	59	1.29
41522398--41522486	28	3.2	27	74	4	81	29	24	22	23	1.99
41522856--41522920	27	2.4	27	87	5	96	23	16	16	43	1.88
41534275--41534454	50	3.5	50	79	7	155	27	20	28	23	1.99
41534322--41534467	50	2.9	50	84	0	193	28	21	28	21	1.99
41534716--41534753	20	1.9	20	89	10	60	50	7	23	18	1.73
41539380--41539429	24	2.1	24	81	7	57	18	40	6	36	1.75
41558621--41558713	48	1.9	48	93	0	159	24	8	24	41	1.83
41562025--41562230	103	2.0	104	95	0	369	43	17	9	30	1.80
41562284--41562788	260	1.9	260	96	0	938	42	13	11	32	1.80
41563003--41563363	181	2.0	181	96	0	659	41	14	5	39	1.68
41563393--41563711	161	2.0	159	93	1	548	40	18	8	32	1.82
41563764--41563956	97	2.0	97	96	0	359	37	19	10	33	1.85
41566337--41566759	212	2.0	212	94	1	742	45	17	13	23	1.83
41567011--41567035	13	1.9	13	100	0	50	40	24	4	32	1.73
41568338--41568363	13	2.0	13	100	0	52	46	23	0	30	1.53
41573441--41573562	62	2.0	61	93	1	208	40	16	8	35	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41576316--41576340	13	1.9	13	100	0	50	40	24	4	32	1.73
41580612--41580661	11	4.7	11	81	18	70	34	18	10	38	1.84
41580696--41580725	13	2.3	13	100	0	60	30	23	6	40	1.80
41580636--41580771	57	2.4	59	87	7	192	26	24	8	40	1.84
41581253--41581310	30	1.9	31	85	3	82	25	22	3	48	1.66
41581253--41581317	30	2.1	31	82	2	78	26	20	6	47	1.73
41582507--41582535	12	2.3	13	94	5	51	65	6	6	20	1.40
41589714--41589764	19	2.5	21	81	12	70	37	13	11	37	1.82
41590075--41590582	44	11.7	44	70	15	168	27	23	20	27	1.99
41590112--41590584	217	2.2	217	92	0	786	27	24	20	27	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141