genome.fa.s6.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  42799318

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  4  of  141  ( 16820 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
935386--935466	38	2.2	37	80	14	87	66	3	2	27	1.21
935710--935757	25	2.0	24	87	4	69	35	12	8	43	1.73
936248--936293	24	1.9	24	86	0	65	15	4	30	50	1.63
940217--940377	34	4.7	34	80	9	168	32	11	14	42	1.81
940488--940612	44	2.8	44	79	4	135	22	15	21	40	1.90
947772--948007	116	2.0	117	92	0	393	40	27	5	25	1.78
951021--951126	29	3.6	29	77	6	90	33	9	22	33	1.86
977704--977746	15	2.7	16	78	10	52	62	6	0	30	1.21
985970--986005	18	2.1	17	89	5	54	75	8	2	13	1.15
993355--993389	18	1.9	18	94	0	61	28	5	42	22	1.76
995136--995193	22	2.7	22	86	7	75	22	0	37	39	1.54
995149--995220	29	2.5	29	80	14	87	22	0	37	40	1.54
995186--995278	21	4.4	21	66	15	66	18	0	43	38	1.50
994972--995278	14	21.9	14	66	10	92	21	0	37	40	1.57
996133--996195	33	2.0	32	84	6	83	11	22	7	58	1.58
997642--997807	29	5.6	28	73	19	133	36	3	10	50	1.52
997593--997754	66	2.5	66	96	1	299	32	3	14	50	1.58
997724--997771	25	2.0	25	91	4	80	37	0	12	50	1.41
1001732--1001899	43	3.9	43	81	4	187	28	16	23	32	1.96
1001744--1001928	43	4.3	41	77	8	149	28	17	23	30	1.97
1014718--1014860	45	3.2	45	80	4	128	49	13	18	18	1.79
1014767--1014890	45	2.7	45	86	1	158	48	10	19	21	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1014809--1014906	46	2.2	46	86	1	135	45	11	19	23	1.82
1021466--1021783	45	7.0	46	82	3	328	41	13	22	22	1.88
1021466--1021785	91	3.5	92	82	5	318	41	14	22	22	1.89
1021531--1021785	46	5.7	43	80	9	135	40	14	22	21	1.90
1024427--1024482	25	2.3	24	81	3	67	23	5	1	69	1.18
1029009--1029139	65	2.0	64	83	8	165	42	3	6	47	1.46
1032548--1032619	21	3.2	21	64	21	56	20	18	12	48	1.80
1032546--1032763	45	4.8	45	91	0	319	22	20	12	44	1.84
1035250--1035854	303	2.0	302	95	0	1084	36	21	12	30	1.90
1042034--1042061	10	2.8	10	100	0	56	0	10	0	89	0.49
1042749--1042836	44	2.0	45	84	6	117	20	27	22	29	1.99
1043074--1043741	44	15.2	44	65	13	196	27	22	19	30	1.98
1043028--1043302	132	2.1	131	88	2	408	28	22	20	29	1.98
1043100--1043450	175	2.0	176	84	3	458	29	22	18	29	1.97
1043276--1043587	132	2.4	132	89	2	468	27	23	19	29	1.98
1042914--1044399	307	4.8	306	85	4	1551	26	22	19	30	1.98
1043422--1043885	88	5.3	87	66	11	244	25	23	20	30	1.98
1043425--1043961	175	3.1	174	88	3	756	25	23	20	30	1.98
1043730--1043829	43	2.3	43	89	1	146	25	23	23	29	1.99
1043135--1044246	483	2.3	476	86	4	1480	26	23	19	30	1.98
1043904--1044267	175	2.1	176	87	2	475	26	21	20	30	1.98
1043773--1044092	131	2.4	132	88	1	455	26	22	20	30	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1044022--1044247	44	5.2	44	69	15	103	26	23	19	30	1.98
1044035--1044135	43	2.3	43	87	1	139	27	22	23	25	2.00
1044079--1044418	132	2.6	132	84	4	438	25	21	20	32	1.98
1044079--1044461	132	2.9	131	80	5	317	26	21	20	31	1.98
1045833--1045970	46	3.0	44	85	7	168	16	17	20	45	1.85
1045833--1045970	47	3.0	46	89	2	188	16	17	20	45	1.85
1046796--1046837	22	1.9	22	85	9	59	9	19	0	71	1.13
1046822--1046857	14	2.5	15	86	9	56	16	8	2	72	1.21
1046851--1046914	25	2.5	26	84	5	76	12	6	6	75	1.19
1048592--1048688	30	3.2	30	75	2	106	28	26	15	28	1.96
1054589--1054784	46	4.3	46	77	6	177	21	19	13	44	1.86
1054605--1054772	44	3.7	45	81	7	153	20	19	13	47	1.82
1061661--1061699	16	2.4	16	82	0	51	35	23	25	15	1.94
1067961--1068010	19	2.7	18	79	14	57	84	4	8	4	0.87
1067979--1068018	8	4.9	8	84	6	53	87	5	2	5	0.73
1067962--1068017	22	2.4	23	82	5	69	85	3	7	3	0.81
1067978--1068018	17	2.4	17	87	0	64	87	4	2	4	0.72
1068518--1068562	14	3.1	14	79	17	56	68	0	15	15	1.21
1068511--1068564	16	3.6	16	80	19	71	68	0	16	14	1.21
1068521--1068562	6	6.0	7	79	20	52	71	0	14	14	1.15
1069827--1070154	88	3.7	88	88	1	478	28	21	25	25	1.99
1070397--1070439	22	2.0	22	85	0	59	30	25	27	16	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1070347--1070489	72	2.0	72	81	2	171	24	23	30	21	1.99
1070180--1070902	239	3.0	239	85	4	984	27	19	27	25	1.99
1070820--1070987	50	3.4	50	69	6	151	29	19	26	25	1.98
1070825--1071059	100	2.3	100	88	1	346	28	21	24	25	1.99
1070878--1071052	50	3.5	50	70	3	136	29	21	24	25	1.99
1072173--1072231	3	19.7	3	80	13	68	33	1	0	64	1.04
1072173--1072227	24	2.3	24	87	6	76	34	1	0	63	1.05
1085892--1085922	16	1.9	16	93	0	53	9	6	12	70	1.31
1098621--1098688	26	2.6	26	95	0	118	22	29	25	23	1.99
1098625--1098707	26	3.2	26	85	0	103	19	30	21	28	1.98
1111592--1111662	25	2.8	25	89	0	106	29	28	21	21	1.98
1111691--1111752	25	2.5	25	91	0	97	33	22	14	29	1.94
1111680--1111772	25	3.7	25	80	5	89	31	22	16	30	1.95
1112817--1112852	16	2.2	17	90	9	58	36	5	2	55	1.38
1112836--1112953	33	3.6	32	72	18	109	42	4	3	50	1.38
1112836--1112961	67	1.9	64	90	9	202	42	3	3	50	1.39
1113557--1113608	17	2.7	19	74	17	54	40	21	15	23	1.91
1114008--1114045	15	2.5	15	84	12	51	71	5	2	21	1.19
1122976--1123017	20	2.1	20	95	0	75	42	4	11	40	1.63
1138820--1139012	105	1.8	108	89	4	311	27	19	18	33	1.96
1140495--1140636	49	2.9	48	84	5	185	30	22	22	24	1.99
1140501--1140632	25	5.3	25	73	13	112	30	21	23	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1144317--1144413	31	3.2	31	70	14	83	19	7	30	42	1.78
1144315--1144430	61	1.9	61	85	0	160	20	9	26	43	1.82
1144328--1144448	61	2.0	61	80	6	138	23	10	23	42	1.85
1144501--1144557	30	1.9	30	88	0	87	17	8	31	42	1.80
1144506--1144574	30	2.3	30	84	0	84	20	14	26	39	1.91
1148244--1148390	61	2.5	61	87	3	210	20	13	25	40	1.89
1149269--1149328	25	2.3	26	80	5	68	15	8	10	66	1.43
1150967--1151004	19	2.0	19	100	0	76	36	0	5	57	1.21
1162079--1162115	9	4.1	9	92	0	65	45	13	10	29	1.77
1162474--1162518	20	2.4	19	85	10	58	26	24	0	48	1.51
1181058--1181164	32	3.1	35	70	18	89	38	5	1	54	1.35
1181106--1181158	20	2.8	19	78	18	58	39	1	1	56	1.21
1185078--1185129	26	2.0	26	88	7	79	32	7	17	42	1.77
1192259--1192384	50	2.5	50	80	6	139	28	28	14	28	1.95
1195817--1195942	50	2.5	50	88	8	177	26	30	15	27	1.96
1200630--1200741	40	2.8	40	78	6	111	35	19	20	24	1.96
1200624--1200755	40	3.3	40	77	5	99	35	21	21	20	1.96
1200790--1200923	41	3.3	41	92	2	216	19	23	29	27	1.98
1200863--1200986	63	2.0	63	93	3	214	18	25	27	29	1.98
1200921--1201053	41	3.2	41	90	2	205	24	22	25	27	2.00
1200822--1201027	104	2.0	104	91	1	333	19	23	27	28	1.99
1201534--1201567	14	2.4	14	90	9	52	26	0	41	32	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1201743--1201860	21	5.4	22	72	11	82	24	1	38	35	1.66
1204220--1204572	118	3.0	118	99	0	697	23	9	24	43	1.83
1206285--1206596	43	7.3	41	85	4	327	24	16	25	33	1.96
1206304--1206544	127	1.9	128	86	2	351	24	17	24	33	1.96
1219082--1219128	24	2.0	24	100	0	94	44	8	17	29	1.78
1221563--1221746	92	2.0	90	92	2	305	40	10	12	36	1.77
1224581--1224628	21	2.3	21	96	0	87	29	25	31	14	1.95
1224594--1224639	21	2.2	21	84	0	56	34	19	30	15	1.93
1224939--1224967	12	2.4	12	100	0	58	6	27	37	27	1.82
1232268--1232320	15	3.8	13	78	16	54	50	15	3	30	1.61

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141