genome.fa.s6.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  42799318

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  11  of  141  ( 16820 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2957702--2957738	13	2.9	13	84	15	51	0	13	5	81	0.86
2957702--2957756	17	3.2	17	78	19	60	1	14	3	80	0.94
2957702--2957755	24	2.2	25	83	3	65	1	14	3	79	0.95
2962397--2962429	12	2.6	13	90	9	59	63	0	6	30	1.18
2968726--2968755	15	2.0	15	100	0	60	33	20	6	40	1.78
2979772--2979850	40	2.0	41	87	7	117	39	27	20	12	1.89
2979877--2980244	114	3.2	112	79	6	375	25	23	25	26	2.00
2982276--2982312	19	1.9	19	89	10	58	32	40	0	27	1.57
2984847--2984908	20	3.2	20	86	4	90	46	8	4	40	1.55
2984967--2985070	19	5.4	19	64	24	58	48	22	0	28	1.57
2984951--2985179	77	3.0	77	96	0	424	47	21	0	31	1.55
2984947--2985180	26	9.2	26	91	2	359	47	21	0	31	1.55
2985172--2985225	9	5.7	10	79	20	55	42	20	0	37	1.52
2985146--2985211	18	3.6	18	84	10	89	46	18	0	34	1.49
2985061--2985225	18	9.5	18	66	30	69	45	20	0	33	1.52
2989065--2989104	20	2.0	20	95	0	71	37	5	22	35	1.76
2990657--2990716	21	2.9	21	85	14	88	30	20	45	5	1.72
2990657--2990727	21	3.4	21	83	11	65	33	16	43	5	1.72
2991053--2991199	42	3.5	42	93	0	240	32	21	21	25	1.98
3006574--3006613	3	13.3	3	100	0	80	67	0	0	32	0.91
3009303--3009362	30	2.0	31	86	3	86	40	0	40	20	1.52
3009655--3009685	9	3.4	9	90	0	53	38	22	12	25	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3012060--3012107	22	2.1	23	84	3	62	77	2	18	2	0.97
3017618--3017646	13	2.1	14	93	6	51	13	0	27	58	1.36
3018720--3018782	7	8.7	7	73	25	51	79	3	17	0	0.86
3018740--3018782	12	3.7	12	87	3	61	81	2	16	0	0.79
3018726--3018782	28	2.0	28	87	12	82	80	1	17	0	0.79
3018720--3018752	16	2.1	16	94	0	57	78	3	18	0	0.87
3018741--3018791	24	2.1	24	85	7	68	76	3	17	1	1.03
3034622--3034674	27	2.0	27	96	0	97	52	15	1	30	1.53
3040008--3040158	45	3.4	45	84	3	189	39	18	21	20	1.93
3044933--3045523	289	2.0	291	96	0	1078	37	14	14	32	1.87
3047353--3047390	20	1.9	20	100	0	76	31	18	5	44	1.72
3050600--3050646	25	1.9	25	86	4	69	14	23	21	40	1.90
3050710--3050788	25	3.2	23	81	12	79	18	30	20	30	1.97
3050720--3050796	25	3.1	23	83	10	91	16	28	23	31	1.96
3050720--3050824	49	2.1	50	82	8	126	17	26	22	33	1.96
3050731--3050825	25	3.8	24	79	8	93	17	26	23	32	1.97
3051952--3051997	23	2.0	23	100	0	92	8	17	43	30	1.79
3061062--3061203	45	3.2	45	87	6	198	23	14	26	36	1.92
3073159--3073206	25	2.0	25	87	4	71	14	27	20	37	1.92
3073270--3073352	25	3.3	24	70	8	69	20	24	21	33	1.97
3073367--3073470	25	4.2	24	80	6	70	20	29	16	33	1.94
3073422--3073469	25	1.9	25	100	0	96	22	29	16	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3079672--3079710	20	2.0	20	85	10	53	46	5	2	46	1.38
3082325--3082498	48	3.6	48	86	3	235	35	27	12	24	1.92
3083537--3083710	48	3.6	48	86	3	235	35	27	12	24	1.92
3084749--3084922	48	3.6	48	86	3	235	35	27	12	24	1.92
3085961--3086134	48	3.6	48	86	3	235	35	27	12	24	1.92
3087173--3087346	48	3.6	48	86	3	235	35	27	12	24	1.92
3089403--3089454	14	3.5	14	73	14	50	53	0	0	46	1.00
3089389--3089454	31	2.1	31	88	0	96	53	3	1	42	1.25
3094910--3094961	14	3.5	14	73	14	50	53	0	0	46	1.00
3094896--3094961	31	2.1	31	88	0	96	53	3	1	42	1.25
3102380--3102529	53	2.7	55	80	6	178	46	16	8	30	1.75
3103876--3103917	16	2.6	16	84	0	57	38	2	28	30	1.70
3104082--3104132	26	2.0	26	88	3	77	45	0	3	50	1.20
3104095--3104230	59	2.3	58	81	6	150	50	3	1	44	1.28
3105485--3105780	50	5.8	50	81	3	281	23	28	20	27	1.99
3119139--3119293	68	2.2	72	88	5	228	34	18	19	27	1.95
3127951--3127988	14	2.8	13	88	7	58	44	5	13	36	1.66
3128236--3128428	32	5.8	32	87	6	260	18	24	17	39	1.91
3128236--3128428	67	2.9	67	91	2	302	18	24	17	39	1.91
3128235--3128438	99	2.0	101	88	2	304	18	23	17	41	1.90
3131239--3131283	20	2.1	22	84	12	58	13	11	8	66	1.44
3135594--3135632	14	2.8	14	85	11	53	43	7	12	35	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3144644--3144728	42	2.0	41	82	10	102	30	4	5	58	1.42
3146275--3146342	26	2.6	26	74	4	66	27	17	8	45	1.78
3152884--3152947	26	2.5	26	100	0	128	28	34	15	21	1.94
3152878--3153030	26	5.6	29	80	5	108	32	24	16	27	1.96
3161132--3161177	15	3.3	14	79	11	51	78	2	4	15	1.01
3161541--3161608	28	2.4	28	77	18	79	52	7	0	39	1.29
3161549--3161608	14	4.3	14	76	19	63	51	6	0	41	1.28
3174110--3174137	11	2.5	11	100	0	56	32	0	28	39	1.57
3180206--3180395	94	2.0	94	100	0	380	26	15	23	34	1.95
3181869--3181919	21	2.5	21	67	3	50	17	43	21	17	1.88
3182771--3182812	20	2.1	20	100	0	84	28	16	23	30	1.96
3194292--3194330	5	7.6	5	82	5	51	41	17	0	41	1.50
3218778--3218812	17	2.0	18	94	5	63	57	0	0	42	0.99
3219224--3219282	29	2.1	28	87	6	84	71	0	1	27	0.96
3219208--3219282	29	2.8	27	78	11	82	66	1	1	30	1.08
3219656--3219709	20	2.5	22	74	14	60	27	9	0	62	1.25
3228333--3228361	14	2.1	14	93	6	51	31	0	0	68	0.89
3232594--3232707	52	2.2	53	91	3	185	54	21	14	9	1.68
3234364--3234438	33	2.3	33	85	0	96	34	14	24	26	1.94
3235196--3235232	14	2.7	14	88	12	51	72	2	24	0	0.97
3245073--3245106	12	2.9	12	95	4	61	35	0	0	64	0.94
3245107--3245147	18	2.3	19	80	16	52	65	12	0	21	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3245228--3245290	30	2.1	30	93	0	108	57	14	3	25	1.52
3245328--3245375	22	2.2	22	81	7	53	56	6	20	16	1.62
3251409--3251454	23	2.0	23	83	8	58	43	8	19	28	1.80
3253625--3254053	196	2.2	196	81	5	488	31	15	9	43	1.78
3260367--3260409	9	4.4	9	85	11	50	67	0	2	30	1.03
3260929--3260985	29	2.0	28	86	10	80	26	1	5	66	1.22
3260930--3260975	10	4.7	10	74	15	51	28	2	2	67	1.14
3260965--3261010	22	2.0	22	87	8	65	21	2	6	69	1.22
3262081--3262137	25	2.3	25	93	3	98	29	22	19	28	1.98
3263321--3263373	26	2.1	24	82	6	61	33	1	1	62	1.17
3264913--3264948	18	2.0	18	88	0	54	33	25	0	41	1.55
3265326--3265446	62	2.0	59	82	7	145	38	4	9	47	1.56
3268559--3268841	125	2.3	122	90	3	422	26	16	17	39	1.90
3268946--3269038	32	3.0	31	81	10	111	37	17	1	44	1.56
3268975--3269054	28	2.9	27	83	7	106	33	16	1	48	1.54
3272436--3272699	138	1.9	138	93	0	456	46	7	6	39	1.57
3272459--3272677	67	3.2	67	64	16	160	45	8	5	40	1.57
3274529--3274588	25	2.4	25	78	13	70	30	0	6	63	1.20
3277522--3277636	25	4.6	25	78	6	117	24	23	20	31	1.98
3279503--3279541	19	2.0	21	90	10	64	56	10	10	23	1.63
3280887--3281000	59	1.9	58	87	1	165	35	16	14	34	1.89
3287694--3288025	75	4.4	74	72	10	274	30	18	21	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3287845--3287950	40	2.7	40	86	0	140	29	19	22	28	1.98
3287773--3288128	155	2.3	155	92	0	588	31	19	21	27	1.98
3287999--3288228	40	5.6	40	73	8	201	29	21	23	24	1.99
3288021--3288254	126	1.9	126	98	0	450	32	22	23	22	1.98
3288664--3288833	14	12.0	14	64	12	51	21	2	30	45	1.64
3288720--3288755	15	2.5	14	86	4	54	25	2	25	47	1.65
3288769--3288833	27	2.3	29	92	7	116	16	0	33	49	1.47
3288769--3288833	28	2.3	28	94	5	114	16	0	33	49	1.47
3288794--3288854	7	8.6	7	77	10	52	21	0	32	45	1.52
3289406--3289482	41	1.9	40	89	2	118	31	18	20	29	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141