genome.fa.s6.2.7.7.80.10.50.1000.48.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  42799318

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  48  of  141  ( 16820 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14465452--14465488	18	2.0	18	89	5	56	64	0	0	35	0.94
14465807--14465858	23	2.2	25	86	10	81	42	0	3	53	1.19
14465809--14465860	24	2.2	24	93	3	88	40	0	3	55	1.18
14469694--14469723	16	1.9	15	93	6	51	50	13	0	36	1.42
14470444--14470468	3	8.3	3	100	0	50	68	0	0	32	0.90
14471913--14471996	44	1.9	44	90	0	132	46	13	13	27	1.79
14483284--14483441	63	2.5	63	89	0	244	37	14	24	23	1.92
14487193--14487263	36	2.0	35	83	10	90	38	2	2	56	1.29
14489285--14489336	26	2.0	26	100	0	104	46	11	11	30	1.76
14491604--14491652	20	2.4	20	81	18	57	26	4	4	65	1.29
14491622--14491666	17	2.6	18	82	7	65	28	2	4	64	1.25
14495233--14495295	32	2.0	32	93	3	110	4	11	9	74	1.20
14507580--14507701	45	2.7	44	80	13	142	30	19	24	25	1.98
14507582--14508393	44	18.6	44	68	14	155	29	19	23	27	1.98
14507487--14508123	217	2.9	217	88	0	941	29	20	22	27	1.98
14507496--14507997	44	11.5	44	69	14	166	29	20	22	27	1.98
14507975--14508255	129	2.2	129	88	1	402	27	19	23	29	1.98
14510322--14510363	19	2.2	20	82	4	50	30	7	11	50	1.66
14514627--14514670	15	2.9	15	79	0	52	13	9	52	25	1.70
14516344--14516436	44	2.1	44	85	4	123	30	4	29	36	1.77
14516599--14516632	17	2.0	17	100	0	68	58	0	0	41	0.98
14516580--14516808	121	1.9	117	94	3	404	51	4	0	43	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14516907--14516939	14	2.3	15	89	5	50	75	3	0	21	0.93
14518787--14518890	49	2.1	49	85	5	140	51	10	7	29	1.64
14521259--14521303	9	4.7	10	76	18	51	37	0	0	62	0.96
14522039--14522076	13	3.0	13	81	18	53	44	15	0	39	1.47
14532302--14532370	36	1.9	36	90	0	111	31	30	13	24	1.93
14536540--14536571	14	2.3	14	94	0	55	34	3	0	62	1.11
14537664--14537720	23	2.5	23	97	0	105	35	7	12	45	1.69
14537664--14537719	11	4.8	12	80	6	71	35	5	12	46	1.65
14541723--14541771	20	2.5	20	83	3	64	24	22	10	42	1.84
14543188--14543281	49	1.9	49	97	0	179	24	22	27	25	2.00
14546746--14546925	39	4.6	39	86	4	229	32	2	17	46	1.63
14550719--14550759	21	2.0	21	81	18	50	21	26	19	31	1.97
14558666--14558703	20	1.9	20	94	0	67	47	13	18	21	1.82
14563456--14563522	29	2.3	29	84	0	80	34	22	11	31	1.90
14564921--14564984	33	1.9	33	87	0	92	23	23	35	17	1.95
14565104--14565151	20	2.4	20	100	0	96	39	10	31	18	1.85
14569818--14569845	14	2.0	14	100	0	56	42	28	0	28	1.56
14570930--14571106	92	1.9	90	80	6	205	30	7	14	48	1.71
14575898--14576014	33	3.2	33	66	25	92	41	12	10	35	1.77
14575886--14576033	76	1.9	76	98	0	287	41	13	10	33	1.79
14576580--14576626	23	2.2	23	81	11	55	53	8	2	36	1.44
14577165--14577257	19	4.6	21	86	9	140	39	15	9	35	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14577165--14577258	40	2.4	38	89	7	134	39	15	9	35	1.81
14580322--14580356	16	2.3	15	90	5	52	65	14	0	20	1.26
14582706--14582730	11	2.3	11	100	0	50	20	8	8	64	1.46
14582855--14582922	16	4.2	16	96	0	118	27	0	36	35	1.58
14582903--14582997	45	2.1	44	86	1	127	35	5	26	32	1.79
14583317--14583477	47	3.6	46	69	18	140	48	3	3	45	1.34
14589186--14589234	17	2.8	17	79	11	55	30	8	16	44	1.76
14605440--14605838	100	4.0	99	87	2	487	26	20	21	32	1.97
14605439--14605698	50	5.2	50	63	2	144	26	21	20	32	1.97
14605855--14606166	167	1.9	168	83	0	410	27	25	18	28	1.98
14606171--14606340	44	3.8	45	85	3	227	31	23	15	29	1.96
14612704--14612795	19	4.8	19	91	0	157	39	15	9	35	1.80
14612704--14612795	38	2.4	38	98	0	175	39	15	9	35	1.80
14616866--14616898	4	8.5	4	86	6	50	54	0	0	45	0.99
14622221--14622742	261	2.0	261	100	0	1044	28	19	8	43	1.80
14625390--14625877	69	7.1	69	79	2	417	36	22	21	19	1.95
14625421--14625877	207	2.2	207	79	2	479	36	22	21	19	1.95
14638213--14638336	63	2.0	62	91	1	203	43	2	15	38	1.60
14638613--14638767	78	2.0	78	98	0	301	32	6	13	47	1.68
14638868--14639012	41	3.5	41	98	0	272	27	20	28	22	1.99
14640187--14640538	126	2.8	126	92	0	582	29	16	21	32	1.95
14643460--14643521	23	2.3	29	79	15	55	29	1	20	48	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14643467--14643528	23	2.4	28	79	15	62	33	1	17	46	1.58
14643528--14643993	29	16.2	29	73	13	331	27	0	27	44	1.58
14643528--14643993	58	8.1	58	79	12	505	27	0	27	44	1.58
14643636--14643681	22	2.2	20	88	11	67	26	0	28	45	1.54
14643558--14644167	52	12.0	49	70	22	270	27	0	27	45	1.58
14643746--14643801	21	2.6	22	88	5	96	26	0	25	48	1.52
14643450--14644181	29	28.8	23	73	21	305	27	0	26	45	1.59
14644034--14644133	22	4.5	22	72	26	93	26	1	25	48	1.58
14643961--14644181	68	3.1	68	86	7	284	26	0	26	46	1.56
14644120--14644217	29	3.4	29	88	5	137	26	0	28	44	1.54
14644301--14644395	25	3.8	25	91	0	154	38	14	1	45	1.52
14644363--14644449	44	2.0	45	93	2	149	48	12	0	39	1.41
14652140--14652198	11	5.4	11	81	0	64	67	15	1	15	1.31
14655585--14655615	15	2.1	15	93	0	53	32	12	22	32	1.92
14672213--14672242	15	2.0	15	93	0	51	56	0	13	30	1.37
14673641--14673774	63	2.1	64	83	1	162	20	21	27	29	1.98
14674600--14674656	30	1.9	30	85	3	80	42	3	24	29	1.71
14674993--14675186	50	3.9	50	84	0	244	25	22	29	21	1.99
14677003--14677067	26	2.4	28	73	19	66	75	1	18	4	1.05
14677003--14677072	27	2.6	25	77	8	68	75	1	18	4	1.04
14677003--14677073	6	11.8	6	76	16	51	76	1	18	4	1.03
14680437--14680475	19	2.0	19	85	5	51	30	0	5	64	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14687343--14687399	20	3.0	19	72	7	53	64	1	0	33	1.04
14693277--14693315	21	1.9	20	89	5	60	53	2	0	43	1.14
14693613--14693979	42	8.6	43	81	4	352	30	24	20	24	1.99
14693564--14694005	42	10.4	42	79	6	248	28	23	21	25	1.99
14694340--14694381	21	2.0	21	90	0	66	7	42	19	30	1.78
14694344--14694392	21	2.3	21	85	0	62	6	38	18	36	1.76
14694353--14694530	87	2.0	87	87	4	252	11	30	17	39	1.86
14694434--14694479	21	2.2	21	88	0	65	2	39	19	39	1.64
14700214--14700243	13	2.3	13	94	0	51	33	0	23	43	1.54
14700227--14700297	9	8.2	9	73	20	62	29	0	21	49	1.50
14701773--14701806	2	16.5	2	93	6	59	50	0	2	47	1.16
14702850--14702880	16	1.9	16	93	0	53	32	6	25	35	1.82
14705293--14705389	41	2.4	41	82	3	115	26	30	21	20	1.98
14705498--14705845	113	3.1	111	84	5	439	26	21	24	27	1.99
14708115--14708148	3	11.3	3	100	0	68	32	0	32	35	1.58
14713753--14713889	69	2.0	69	92	2	231	38	21	11	27	1.88
14723633--14723674	15	2.9	15	79	13	52	69	2	4	23	1.20
14725335--14725367	15	2.2	15	94	0	57	42	27	9	21	1.83
14734116--14734145	2	15.0	2	92	0	51	53	0	46	0	1.00
14744984--14745042	22	2.7	23	82	17	72	64	3	1	30	1.20
14745050--14745090	21	2.0	21	85	0	55	56	4	7	31	1.48
14745098--14745154	29	1.9	29	86	10	80	75	1	3	19	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14745639--14745715	19	3.7	21	76	13	68	41	15	5	37	1.70
14745639--14745696	22	2.6	22	81	7	64	41	17	5	36	1.72
14745675--14745785	19	5.8	19	86	0	159	38	12	8	40	1.73
14745675--14745778	38	2.7	38	93	0	181	39	11	7	41	1.70
14747727--14747788	29	2.2	28	83	8	81	43	11	24	20	1.85
14747736--14747917	29	6.3	29	75	8	138	41	13	25	19	1.88
14749146--14749219	35	2.1	35	97	0	139	50	13	6	29	1.67
14750821--14750867	24	2.0	24	95	0	85	34	2	12	51	1.52
14754928--14754985	19	2.9	19	87	9	89	55	17	0	27	1.42
14754920--14755187	21	12.2	21	72	17	133	54	14	0	30	1.46

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141