genome.fa.s6.2.7.7.80.10.50.1000.43.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  42799318

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  43  of  141  ( 16820 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12928103--12928206	21	5.0	21	91	0	163	15	20	19	45	1.86
12937989--12938050	20	3.2	19	70	6	61	14	32	17	35	1.90
12937962--12938090	40	3.2	40	78	12	149	17	30	16	36	1.91
12937962--12938110	40	3.8	40	75	8	126	16	30	16	36	1.91
12938930--12939003	32	2.3	32	88	4	105	25	35	16	22	1.95
12939835--12939876	16	2.5	17	84	3	59	59	2	11	26	1.45
12942287--12942315	15	1.9	15	100	0	58	20	27	3	48	1.66
12946318--12946348	15	2.0	16	93	6	55	58	0	0	41	0.98
12947808--12948048	122	2.0	121	82	6	299	31	25	14	29	1.94
12952238--12952308	27	2.6	27	79	0	88	25	16	23	33	1.96
12961499--12961570	34	2.1	34	100	0	144	44	16	20	18	1.87
12964248--12964298	22	2.3	22	83	6	59	27	13	11	47	1.78
12986738--12986767	15	2.0	15	93	0	51	36	6	26	30	1.82
12997868--12997897	15	2.0	15	100	0	60	40	6	26	26	1.81
12998466--12998504	20	2.0	20	100	0	78	38	15	5	41	1.69
12999848--12999910	18	3.5	17	70	12	54	49	20	4	25	1.68
13000288--13000353	29	2.3	28	84	7	89	48	18	3	30	1.63
13003491--13003700	40	5.3	39	87	5	233	24	21	28	25	1.99
13003438--13003700	120	2.2	120	81	4	300	25	21	27	25	1.99
13003491--13003735	80	3.1	80	81	3	228	25	21	28	24	1.99
13011440--13011729	40	7.3	40	95	0	456	23	20	28	26	1.99
13011387--13011729	80	4.3	80	90	1	449	23	20	28	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13014464--13014529	27	2.4	27	84	0	96	37	19	19	22	1.94
13014723--13014787	27	2.4	27	92	2	105	20	23	23	33	1.97
13014723--13014796	27	2.8	27	89	2	87	18	24	22	33	1.97
13014946--13015014	28	2.5	28	80	4	86	17	20	23	39	1.92
13017895--13017940	16	2.9	16	73	23	51	41	6	26	26	1.80
13017877--13017954	32	2.4	32	84	0	111	46	5	23	25	1.73
13017962--13018050	39	2.3	39	94	1	153	37	15	15	31	1.90
13024465--13024513	23	2.1	23	96	0	89	18	32	4	44	1.68
13028969--13029017	23	2.1	23	96	0	89	18	32	4	44	1.68
13032592--13032673	43	1.9	43	84	0	110	39	24	19	17	1.92
13035050--13035099	23	2.1	23	85	3	64	46	16	20	18	1.85
13037706--13037804	51	1.9	51	85	0	135	47	16	8	28	1.74
13037705--13037812	17	6.4	17	71	0	81	45	16	9	28	1.78
13039382--13039466	25	3.4	25	83	0	89	23	21	24	30	1.99
13041427--13041466	18	2.2	18	86	0	53	35	15	17	32	1.91
13041839--13041922	33	2.6	33	81	5	93	52	14	2	30	1.54
13042494--13043207	269	2.7	269	97	0	1356	36	17	13	32	1.89
13044046--13044112	27	2.4	28	92	2	109	50	13	1	34	1.51
13044242--13045044	269	3.0	269	98	0	1534	36	18	13	31	1.89
13045885--13045960	27	2.7	28	87	6	109	51	14	1	32	1.51
13046172--13046212	21	2.0	21	95	0	73	41	17	4	36	1.71
13046462--13046502	21	2.0	21	95	0	73	41	17	4	36	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13046082--13046635	290	1.9	290	99	0	1099	36	19	12	32	1.89
13050691--13050926	39	6.1	39	82	0	256	44	18	5	31	1.73
13053261--13053312	18	3.0	18	73	18	56	25	21	34	19	1.96
13058530--13058560	15	2.0	16	93	6	55	58	0	0	41	0.98
13059036--13059070	16	2.2	16	89	0	52	28	11	25	34	1.91
13059147--13059191	16	2.8	16	82	0	54	46	11	11	31	1.74
13064911--13064960	26	1.9	26	91	0	82	48	6	12	34	1.65
13084630--13085119	166	3.0	166	95	0	863	27	20	24	27	1.99
13089148--13089228	41	2.0	41	100	0	162	32	13	12	41	1.82
13089251--13089293	20	2.2	19	87	4	59	2	16	2	79	0.95
13095350--13095394	22	2.0	22	86	4	63	37	17	6	37	1.76
13095861--13096244	131	2.9	131	88	2	565	26	25	19	28	1.99
13096241--13096525	89	3.2	89	82	2	331	26	24	21	27	1.99
13096598--13096989	181	2.2	181	85	2	511	29	21	17	31	1.96
13097000--13097454	44	10.2	44	79	5	330	27	21	18	32	1.97
13097000--13097446	222	2.0	222	89	2	675	27	22	18	32	1.97
13097731--13097786	24	2.3	24	93	0	103	32	26	12	28	1.93
13098704--13098728	9	2.8	9	100	0	50	8	0	8	84	0.79
13103215--13103256	18	2.3	18	87	4	57	52	7	0	40	1.29
13113852--13113910	28	2.1	28	100	0	118	27	3	25	44	1.70
13120246--13120293	24	2.0	24	100	0	96	33	20	20	25	1.97
13121006--13121059	21	2.6	21	87	0	81	35	0	38	25	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13121486--13121519	17	2.0	17	94	0	59	23	14	5	55	1.61
13128855--13128950	25	3.9	24	75	15	79	27	18	23	30	1.98
13128855--13128950	50	1.9	50	82	4	122	27	18	23	30	1.98
13135294--13135382	39	2.2	41	90	5	139	53	5	1	39	1.32
13135473--13135517	20	2.2	21	92	4	74	44	2	2	51	1.26
13146744--13146811	34	2.0	34	97	0	127	16	14	10	58	1.62
13150595--13150640	24	1.9	24	86	0	65	45	17	26	10	1.81
13156649--13156673	13	1.9	13	100	0	50	8	40	12	40	1.72
13158684--13158983	45	6.9	45	71	16	177	28	19	24	28	1.99
13158686--13158842	44	3.5	45	80	11	162	28	20	24	27	1.99
13158686--13159009	89	3.7	88	72	9	295	27	20	23	28	1.99
13158728--13159155	172	2.5	174	83	7	541	28	18	22	30	1.97
13158945--13159145	44	4.6	44	66	13	128	28	17	20	33	1.96
13158947--13159242	129	2.3	129	94	2	515	28	16	21	33	1.95
13166128--13166175	20	2.3	22	75	7	55	2	18	8	70	1.22
13166117--13166186	26	2.6	26	86	4	86	1	18	11	68	1.27
13166115--13166233	56	2.1	55	86	7	161	2	15	9	73	1.19
13166784--13166848	32	2.1	32	97	2	123	47	12	9	30	1.72
13167994--13168040	24	2.0	24	86	0	67	59	27	4	8	1.45
13172773--13172891	39	3.1	37	76	13	132	53	1	5	38	1.35
13177998--13178032	16	2.1	17	89	5	54	42	0	5	51	1.25
13179204--13179247	21	2.1	21	91	0	70	11	18	29	40	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13179413--13179809	43	9.2	43	83	7	493	21	20	27	30	1.98
13179413--13179791	86	4.4	86	95	0	659	21	19	27	31	1.98
13179762--13179881	43	2.8	42	76	13	136	30	30	19	20	1.97
13180035--13180064	9	3.2	9	90	9	51	66	3	0	30	1.07
13180228--13180329	21	4.9	21	81	0	96	4	42	16	36	1.70
13180228--13180329	42	2.4	42	85	0	132	4	42	16	36	1.70
13180296--13180340	21	2.1	21	87	0	63	2	40	17	40	1.62
13180311--13180481	66	2.6	65	86	4	218	12	26	19	40	1.88
13184838--13185012	87	2.0	87	90	0	278	24	28	17	29	1.97
13185986--13186098	9	13.7	9	67	15	57	33	5	17	43	1.72
13185991--13186024	16	2.1	16	94	0	59	32	0	14	52	1.42
13189590--13189629	11	3.7	11	93	3	64	27	27	10	35	1.89
13190156--13190185	14	2.1	14	100	0	60	53	6	13	26	1.64
13191499--13191550	27	1.9	27	88	0	77	50	9	0	40	1.35
13192788--13192985	84	2.4	82	89	3	308	38	21	22	17	1.93
13192804--13192985	41	4.4	41	73	9	154	40	20	21	17	1.92
13196870--13196903	16	2.1	17	88	5	52	41	0	32	26	1.56
13203360--13203388	12	2.3	13	94	5	51	20	6	6	65	1.40
13207210--13207355	72	2.0	72	97	0	274	32	14	24	28	1.94
13210593--13210636	18	2.4	19	77	14	56	61	9	0	29	1.27
13210602--13210635	17	1.9	18	88	5	52	58	8	0	32	1.29
13213333--13213390	19	2.7	22	84	10	68	36	8	17	37	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13220651--13220761	11	10.6	10	69	25	54	46	1	28	22	1.62
13222383--13222427	19	2.4	19	85	7	56	26	24	11	37	1.89
13225720--13225744	9	2.8	9	100	0	50	84	8	0	8	0.79
13226999--13227233	45	5.4	45	83	4	293	27	18	27	26	1.98
13226994--13227233	132	1.8	132	92	0	408	27	18	27	26	1.98
13226940--13227247	87	3.5	86	78	7	316	29	17	25	26	1.98
13226940--13227233	45	6.7	45	79	6	291	29	18	25	26	1.98
13232859--13232923	24	2.7	24	88	4	78	23	46	3	27	1.67
13241060--13241094	19	1.9	17	88	11	52	60	14	5	20	1.54
13260266--13260322	26	2.2	26	100	0	114	42	7	12	38	1.70

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141