genome.fa.s6.2.7.7.80.10.50.1000.104.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  42799318

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  104  of  141  ( 16820 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29539614--29540159	176	3.1	176	100	0	1092	39	7	6	46	1.58
29542305--29542354	23	2.2	23	96	0	91	38	14	30	18	1.89
29543296--29543448	82	1.9	82	87	2	227	36	28	18	15	1.92
29543240--29543472	41	5.7	41	72	13	142	37	28	17	16	1.92
29548778--29548866	29	3.0	29	70	6	72	28	7	10	53	1.62
29550688--29550727	17	2.4	17	95	0	71	7	32	0	60	1.25
29559443--29559490	21	2.2	21	96	3	87	56	14	16	12	1.68
29559985--29560029	22	2.0	23	82	4	56	37	26	15	20	1.92
29567683--29567715	15	2.1	16	88	5	50	42	3	3	51	1.32
29600069--29600425	47	7.6	47	90	1	534	32	8	29	29	1.86
29600069--29600425	143	2.5	142	90	2	558	32	8	29	29	1.86
29614317--29614345	13	2.1	14	93	6	51	75	6	6	10	1.17
29615010--29615252	59	4.1	59	98	0	468	27	18	19	34	1.95
29618000--29618096	21	4.8	19	71	9	59	39	15	29	15	1.88
29617888--29618096	41	5.1	41	83	0	274	37	16	29	16	1.91
29618281--29618318	17	2.2	17	86	9	51	42	23	0	34	1.55
29630625--29630693	32	2.2	32	92	2	113	23	7	30	39	1.82
29639690--29640041	138	2.6	137	91	0	571	44	5	8	41	1.58
29640091--29640186	39	2.4	39	82	5	113	37	19	21	20	1.94
29640229--29640401	41	4.2	41	82	10	192	23	17	23	35	1.96
29640229--29640401	82	2.1	82	85	2	231	23	17	23	35	1.96
29641231--29641256	8	3.2	8	100	0	52	11	11	11	65	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29642507--29642546	21	2.0	21	90	5	64	57	5	0	37	1.21
29643530--29643560	16	1.9	16	100	0	62	35	12	12	38	1.82
29644536--29644573	18	2.1	19	90	5	60	63	0	0	36	0.95
29644592--29644864	43	6.3	43	76	6	223	22	18	27	31	1.97
29644636--29644865	86	2.6	88	80	5	263	23	19	26	30	1.98
29645162--29645308	75	2.0	75	90	5	235	31	14	7	46	1.72
29645859--29645891	17	1.9	17	88	11	50	33	6	27	33	1.81
29648876--29648944	30	2.3	30	82	5	77	36	15	23	24	1.94
29648906--29649004	30	3.3	30	77	5	101	41	13	25	20	1.88
29663050--29663192	50	2.8	50	88	1	214	25	23	30	20	1.98
29671822--29671915	46	2.0	46	93	0	161	23	18	22	36	1.95
29689985--29690030	24	1.9	24	95	0	83	43	8	19	28	1.80
29691678--29691783	53	2.0	53	98	0	203	29	9	24	36	1.87
29692832--29692880	20	2.5	20	74	12	55	6	26	20	46	1.73
29709239--29709284	10	4.7	10	76	13	51	71	2	2	23	1.08
29709239--29709284	18	2.3	21	85	10	62	71	2	2	23	1.08
29710791--29710920	43	3.1	43	86	6	194	36	30	16	16	1.91
29717825--29718147	45	7.2	45	97	0	592	25	20	15	38	1.92
29718494--29718540	20	2.3	20	92	0	76	31	17	29	21	1.96
29721430--29721484	20	2.8	20	88	0	83	29	16	29	25	1.97
29721692--29721743	21	2.4	21	90	3	77	36	44	0	19	1.51
29722145--29722306	73	2.2	74	95	1	290	29	26	19	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29722020--29722419	188	2.1	186	90	1	631	26	27	20	25	1.99
29722218--29722846	113	5.6	113	89	3	864	26	26	21	25	2.00
29724862--29724930	31	2.2	31	84	0	93	42	13	11	33	1.80
29727526--29727621	26	3.8	25	76	12	72	36	21	23	17	1.95
29730362--29730399	12	3.2	12	96	0	67	13	31	39	15	1.86
29736279--29736303	13	1.9	13	100	0	50	40	8	12	40	1.72
29753659--29753698	13	2.9	15	75	17	50	15	17	0	67	1.23
29753826--29754138	155	2.0	155	99	0	617	39	11	17	31	1.84
29755120--29755252	24	5.5	24	71	12	92	23	28	15	32	1.95
29755385--29755450	32	2.1	32	91	0	105	18	24	19	37	1.93
29755416--29755473	25	2.3	25	84	0	71	18	25	17	37	1.93
29762942--29763030	24	3.7	24	71	11	74	23	26	16	32	1.96
29763073--29763153	25	3.2	25	84	6	103	16	24	22	37	1.93
29763193--29763249	25	2.3	25	84	0	69	19	24	17	38	1.93
29766833--29767079	110	2.2	113	85	5	331	51	19	3	25	1.62
29767531--29767612	41	2.0	41	90	4	130	32	0	19	47	1.50
29767506--29767621	41	3.3	33	74	20	108	37	0	14	48	1.44
29767682--29768452	126	6.1	126	92	0	1134	37	17	16	28	1.92
29773785--29773814	15	2.1	15	93	6	53	36	10	0	53	1.35
29776460--29776516	21	2.7	21	91	0	96	40	12	10	36	1.77
29776714--29776754	20	2.0	22	85	9	59	14	9	4	70	1.30
29777255--29777366	51	2.2	52	80	6	131	32	6	6	55	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29782838--29782906	36	1.9	36	87	0	102	30	13	24	31	1.93
29783686--29783725	20	2.0	20	100	0	80	45	20	15	20	1.86
29784028--29784097	34	2.1	33	89	2	104	24	38	8	27	1.84
29796698--29796758	22	2.8	23	74	16	58	49	3	3	44	1.35
29796683--29796758	21	3.6	21	69	13	57	52	2	3	40	1.34
29796954--29796998	22	2.0	22	83	8	56	33	6	4	55	1.46
29818386--29818547	28	5.8	28	76	5	139	30	19	24	25	1.98
29818387--29818542	85	1.8	85	83	5	208	30	18	24	26	1.98
29818386--29818570	28	6.6	28	75	9	128	30	18	24	26	1.98
29818531--29818655	27	4.7	26	67	11	74	27	19	26	27	1.99
29818673--29818729	26	2.2	26	84	9	71	28	17	33	21	1.96
29824057--29824091	11	3.2	11	87	0	52	54	0	0	45	0.99
29824755--29824826	36	2.0	36	97	0	135	16	27	15	40	1.89
29843370--29843474	26	4.0	26	78	10	97	22	26	15	35	1.94
29843460--29843591	52	2.5	52	80	9	151	30	23	12	34	1.91
29851633--29851761	37	3.5	37	86	0	168	40	28	11	19	1.86
29851608--29851778	74	2.3	75	79	6	197	41	29	11	17	1.84
29853869--29853912	22	2.0	21	86	4	61	81	0	15	2	0.78
29860757--29860856	21	4.8	21	66	8	69	41	17	26	16	1.89
29860757--29860869	42	2.7	42	87	2	156	42	17	23	15	1.88
29860799--29860871	21	3.5	21	71	0	74	43	19	20	16	1.88
29861062--29861148	45	1.9	45	88	0	129	44	13	1	40	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29872135--29872172	17	2.2	17	100	0	76	44	5	0	50	1.24
29872279--29872344	28	2.4	27	85	12	89	65	1	0	33	1.02
29872310--29872405	18	5.1	19	68	16	65	54	0	3	42	1.16
29874988--29875031	18	2.4	18	88	7	63	47	0	0	52	1.00
29879949--29880165	27	8.1	27	73	5	179	20	22	13	43	1.86
29879953--29880173	81	2.7	81	85	2	284	21	22	12	42	1.86
29880277--29880512	54	4.4	52	73	14	169	29	25	14	30	1.95
29880307--29880514	27	7.7	27	83	6	237	29	25	14	30	1.95
29880394--29880461	26	2.6	26	90	0	100	33	20	13	32	1.91
29883583--29883626	22	2.0	23	86	4	63	68	2	18	11	1.30
29886991--29887126	27	5.0	27	70	3	103	22	30	14	31	1.94
29906041--29906302	43	6.1	42	83	4	274	28	29	16	25	1.97
29906570--29906656	43	2.0	43	86	0	120	43	10	11	34	1.75
29910497--29910558	14	4.4	14	68	8	54	32	43	0	24	1.54
29910551--29910584	17	2.0	17	88	0	50	41	35	0	23	1.55
29911059--29911221	41	3.9	41	86	2	191	34	26	19	19	1.96
29911059--29911221	84	2.0	84	82	2	204	34	26	19	19	1.96
29911343--29911422	41	2.0	41	87	5	117	23	17	20	38	1.93
29911327--29911434	41	2.7	41	81	8	116	25	18	18	37	1.93
29912370--29912401	16	2.0	16	93	0	55	34	34	6	25	1.81
29927067--29927116	22	2.2	23	82	10	59	38	20	4	38	1.71
29929005--29929149	40	3.7	40	75	12	138	24	28	23	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29929059--29929274	108	2.0	107	97	0	405	26	28	19	25	1.99
29944637--29944785	54	2.8	54	78	0	172	18	26	27	27	1.98
29947461--29947536	23	3.3	23	83	0	107	31	25	19	23	1.98
29947762--29947800	18	2.2	17	86	13	53	46	20	0	33	1.51
29952215--29952251	16	2.3	16	95	0	65	37	5	32	24	1.78
29952621--29952788	47	3.7	46	70	18	143	47	3	3	45	1.37
29952636--29952812	91	1.9	92	88	4	254	49	3	2	44	1.33
29952777--29952815	17	2.5	15	84	12	51	58	0	0	41	0.98
29969337--29969375	20	2.0	20	89	0	60	51	5	7	35	1.53
29972540--29972572	15	2.1	16	88	5	50	9	9	0	81	0.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141