genome.fa.s6.2.7.7.80.10.50.1000.58.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  42799318

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  58  of  141  ( 16820 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17353566--17353606	21	1.9	22	90	5	66	41	9	0	48	1.36
17368659--17368689	15	2.1	15	100	0	62	35	19	0	45	1.51
17370872--17370898	11	2.5	11	100	0	54	22	7	18	51	1.70
17372299--17372493	93	2.1	92	88	4	286	44	4	4	47	1.41
17372526--17372559	17	2.0	17	94	0	59	44	5	0	50	1.26
17372526--17372564	17	2.4	16	87	8	53	43	5	0	51	1.24
17372530--17372569	17	2.3	18	83	12	57	47	5	0	47	1.24
17372649--17372783	15	8.9	15	66	24	61	42	2	3	51	1.31
17372525--17372740	120	1.8	119	89	7	339	39	3	6	50	1.45
17372736--17373039	154	1.9	157	95	2	551	47	5	2	44	1.41
17372892--17372926	18	2.0	17	88	5	52	45	0	0	54	0.99
17373159--17373197	16	2.4	16	86	0	51	28	33	2	35	1.71
17373172--17373228	16	3.6	16	95	0	87	33	36	0	29	1.58
17373583--17373611	14	2.0	15	93	6	51	24	13	0	62	1.32
17374079--17374120	22	1.9	22	85	9	59	2	2	47	47	1.28
17374176--17374238	28	2.3	27	78	10	65	17	1	44	36	1.59
17379437--17379492	27	2.1	27	100	0	112	51	17	3	26	1.62
17383276--17383331	19	2.9	19	76	10	60	41	0	7	51	1.29
17388039--17388074	15	2.5	14	86	8	54	44	8	0	47	1.33
17388682--17388866	93	2.0	94	89	3	284	30	23	7	37	1.83
17389259--17389308	7	7.1	7	77	8	57	22	12	32	34	1.90
17389238--17389312	35	2.1	35	85	4	98	22	10	33	33	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17389978--17390046	35	2.0	35	88	0	102	20	7	34	37	1.80
17393395--17393445	15	3.3	15	76	15	59	52	3	5	37	1.44
17393397--17393456	17	3.7	17	75	20	65	55	3	8	33	1.47
17397414--17397448	6	5.8	6	100	0	70	0	17	0	82	0.66
17401623--17402157	109	4.9	109	91	0	840	29	17	18	34	1.94
17405833--17405877	10	4.4	11	78	21	53	75	0	24	0	0.80
17405841--17405876	9	4.0	9	88	0	54	83	0	16	0	0.65
17405835--17405874	20	2.0	20	90	9	64	80	0	20	0	0.72
17407143--17407464	44	7.3	44	65	18	152	29	18	26	26	1.98
17407143--17407620	132	3.6	132	88	2	667	29	19	24	25	1.98
17407608--17407901	100	3.0	99	85	2	383	30	21	21	26	1.98
17407745--17408070	149	2.2	150	86	0	456	30	22	20	26	1.98
17407837--17408240	100	4.1	99	91	1	533	31	22	21	24	1.98
17407638--17408159	249	2.1	247	87	1	749	30	22	22	24	1.99
17407888--17408242	100	3.6	100	95	0	597	30	22	23	23	1.99
17408181--17408307	66	1.9	67	87	4	186	36	18	18	25	1.94
17409737--17410161	109	3.9	109	90	1	658	30	17	18	33	1.95
17410878--17410970	46	2.0	46	97	0	177	41	0	17	40	1.49
17411150--17411222	30	2.4	30	93	0	119	43	17	13	24	1.86
17414606--17414637	5	6.4	5	100	0	64	40	0	18	40	1.51
17415139--17415213	21	3.8	20	74	13	75	34	2	2	60	1.25
17415131--17415203	37	1.9	38	89	8	114	30	2	4	63	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17415139--17415245	21	5.4	21	69	19	70	34	2	2	59	1.26
17415130--17415373	10	25.6	9	68	20	97	33	2	3	61	1.24
17415334--17415402	20	3.5	19	80	7	75	28	1	2	66	1.14
17415334--17415394	21	3.0	21	83	9	65	27	1	3	67	1.16
17421254--17421278	7	3.6	7	100	0	50	28	12	0	60	1.32
17424148--17424172	12	2.1	12	100	0	50	8	16	0	76	1.02
17426357--17426419	20	3.1	20	73	13	74	20	31	11	36	1.88
17426337--17426429	41	2.3	41	94	0	168	20	29	13	36	1.91
17426337--17426403	21	3.2	21	75	12	75	20	31	13	34	1.92
17427166--17427200	13	2.7	13	100	0	70	31	37	22	8	1.85
17428306--17428418	32	3.5	32	87	6	156	37	8	9	44	1.69
17433586--17434015	109	4.0	111	83	7	533	33	13	15	36	1.87
17434027--17434236	100	2.1	97	90	3	321	24	16	14	44	1.85
17434027--17434236	98	2.1	101	88	4	320	24	16	14	44	1.85
17434228--17434262	17	2.0	17	88	5	52	0	17	2	80	0.84
17435648--17435695	18	2.8	17	84	12	62	27	0	2	70	0.98
17435651--17435703	17	3.1	17	83	2	61	22	0	3	73	0.99
17452475--17452552	33	2.5	32	81	12	90	46	15	3	34	1.64
17455458--17455535	30	2.6	30	85	6	104	41	5	2	51	1.38
17455458--17455553	30	3.2	29	78	7	95	37	7	3	52	1.45
17456171--17456297	42	3.0	42	97	0	245	49	5	2	42	1.38
17456854--17456890	17	2.2	17	95	0	65	29	0	18	51	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17461875--17461917	21	2.0	21	90	0	68	46	20	16	16	1.84
17468613--17468664	26	2.1	23	86	10	68	75	7	3	13	1.17
17470152--17470176	8	3.1	8	100	0	50	76	0	0	24	0.80
17470153--17470219	3	22.3	3	73	11	57	65	4	1	28	1.21
17470303--17470375	14	5.2	14	68	12	51	67	6	5	20	1.35
17470341--17470382	14	2.7	15	82	14	50	71	4	4	19	1.22
17470811--17470843	6	5.7	6	92	3	50	54	0	45	0	0.99
17470811--17470845	17	2.1	17	88	0	52	51	0	48	0	1.00
17473220--17473255	18	2.0	18	89	10	56	52	2	11	33	1.51
17478881--17478910	14	2.1	14	100	0	60	43	13	0	43	1.43
17479871--17479917	23	2.0	23	100	0	94	59	8	12	19	1.58
17485866--17485913	26	1.9	26	83	8	64	31	10	8	50	1.66
17489951--17490049	34	2.9	34	86	3	137	33	10	11	45	1.73
17495356--17495390	18	2.0	18	94	5	63	17	45	25	11	1.81
17499582--17499611	13	2.4	12	89	10	51	66	0	0	33	0.92
17499761--17499816	29	2.0	28	82	3	67	44	5	10	39	1.62
17503859--17503905	23	2.0	22	84	8	58	59	2	0	38	1.09
17503869--17503941	30	2.6	27	83	16	78	60	4	1	34	1.24
17503892--17503949	27	2.1	27	81	12	66	63	3	1	31	1.21
17512064--17512139	37	2.1	37	94	0	134	15	15	27	40	1.88
17512387--17512422	18	2.0	18	94	0	63	52	0	38	8	1.32
17514315--17514628	162	1.9	163	95	0	567	35	13	16	34	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17518096--17518191	45	2.1	46	84	7	124	42	8	3	45	1.50
17523578--17523610	13	2.5	13	100	0	66	6	33	33	27	1.81
17524866--17524909	16	2.9	15	90	6	70	15	11	13	59	1.62
17526323--17526347	13	1.9	13	100	0	50	64	0	0	36	0.94
17526420--17526458	3	13.3	3	83	5	53	64	2	2	30	1.21
17527953--17528658	44	15.8	44	74	8	451	28	22	18	30	1.97
17527911--17528295	41	8.8	41	70	14	173	28	22	20	29	1.98
17528086--17528431	137	2.5	137	94	1	593	29	22	17	30	1.97
17528984--17529045	24	2.6	24	92	0	106	25	24	11	38	1.88
17530868--17530914	6	8.2	6	81	9	62	0	21	0	78	0.75
17530870--17530914	11	4.0	11	85	5	63	0	20	0	80	0.72
17530908--17530966	29	2.0	29	86	3	82	22	5	3	69	1.23
17530936--17530960	8	3.1	8	100	0	50	12	0	0	88	0.53
17531786--17531811	4	6.5	4	100	0	52	50	0	23	26	1.50
17535203--17535227	13	1.9	13	100	0	50	64	0	4	32	1.12
17536365--17536458	47	2.0	46	91	2	152	31	7	28	31	1.85
17537099--17537131	6	5.7	6	92	7	59	27	0	0	72	0.85
17537099--17537131	11	2.8	12	90	9	59	27	0	0	72	0.85
17537098--17537135	17	2.3	16	91	8	67	23	0	0	76	0.79
17548107--17548173	32	2.1	32	100	0	134	25	28	11	34	1.91
17548692--17548936	114	2.1	114	93	0	409	35	13	8	41	1.76
17551466--17551505	20	2.0	20	90	0	62	27	10	12	50	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17551451--17551517	34	1.9	35	90	3	109	31	8	13	46	1.74
17551445--17551521	14	5.0	15	71	20	52	33	9	14	42	1.77
17557682--17557713	16	2.0	16	93	0	55	31	15	12	40	1.85
17557776--17557876	51	2.0	52	88	2	150	35	24	16	22	1.95
17564839--17564869	16	1.9	16	93	0	53	41	0	38	19	1.51
17575601--17575625	9	2.8	9	100	0	50	52	24	12	12	1.72
17577534--17577564	15	2.1	15	100	0	62	38	6	32	22	1.80
17578501--17578530	15	2.0	15	93	0	51	23	6	46	23	1.75
17580110--17580140	15	2.1	15	100	0	62	38	6	32	22	1.80
17580297--17580335	18	2.3	17	86	8	53	38	5	12	43	1.65

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141