genome.fa.s6.2.7.7.80.10.50.1000.62.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  42799318

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  62  of  141  ( 16820 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18382511--18383410	21	42.8	20	70	16	300	45	32	0	22	1.57
18382718--18382894	94	1.9	94	84	6	243	43	31	0	25	1.55
18383096--18383189	35	2.7	36	75	9	95	45	30	0	23	1.53
18382668--18383405	21	34.5	22	71	14	363	44	31	0	23	1.57
18382811--18383358	7	77.6	7	63	18	59	44	31	0	23	1.59
18383166--18383410	106	2.3	105	83	4	305	45	32	0	21	1.55
18383386--18383415	14	2.1	15	93	6	53	56	26	0	16	1.40
18386572--18386936	125	2.9	124	85	3	484	30	21	16	31	1.95
18387291--18387348	20	3.0	20	82	2	55	32	1	10	55	1.44
18390591--18391254	153	4.4	153	87	5	945	51	8	9	30	1.63
18394244--18394284	19	2.2	19	95	0	73	46	14	24	14	1.82
18394698--18394876	89	2.0	89	95	0	322	40	25	8	25	1.84
18395470--18395582	57	1.9	58	96	3	210	41	17	15	24	1.89
18397490--18397520	12	2.6	12	89	0	53	70	0	3	25	1.02
18398354--18398435	42	2.0	42	85	0	110	48	10	15	24	1.77
18398713--18398755	20	2.0	22	86	8	63	44	11	6	37	1.68
18399481--18399506	2	13.0	2	100	0	52	50	0	50	0	1.00
18403551--18403603	24	2.2	24	89	0	79	33	1	9	54	1.43
18403855--18403924	34	2.1	34	100	0	140	20	17	2	60	1.49
18404938--18404973	17	2.1	17	89	0	54	47	11	8	33	1.69
18405513--18405565	24	2.2	24	89	0	79	33	1	9	54	1.43
18426309--18426367	24	2.4	25	83	8	77	28	0	0	71	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18427712--18427904	34	5.6	33	79	8	163	34	19	16	30	1.93
18427760--18427904	67	2.2	67	80	5	159	36	17	15	31	1.90
18428189--18428254	17	3.7	17	72	21	55	28	1	3	66	1.15
18428643--18428688	23	2.0	23	91	0	74	30	13	4	52	1.59
18429083--18429128	9	5.1	9	83	0	56	58	2	0	39	1.10
18431931--18431964	17	2.0	17	88	0	50	52	14	11	20	1.73
18439936--18439991	30	1.9	28	85	7	76	41	3	25	30	1.72
18440223--18440374	50	3.0	50	82	4	180	26	23	30	19	1.98
18444982--18445026	23	2.0	22	83	12	56	28	6	6	57	1.50
18448740--18448798	11	5.3	11	74	11	57	66	3	0	30	1.08
18448740--18448768	12	2.5	12	94	5	51	68	0	0	31	0.89
18471259--18471314	21	2.7	21	81	8	62	64	0	3	32	1.11
18474527--18474858	42	7.9	42	86	4	373	31	20	20	27	1.98
18474538--18474774	126	1.9	126	94	1	422	32	20	21	25	1.98
18474926--18474959	14	2.4	14	95	0	59	52	20	8	17	1.71
18475183--18475253	21	3.4	21	80	0	79	2	45	18	33	1.64
18480704--18480944	7	28.0	9	63	33	72	33	0	20	46	1.51
18480749--18481101	25	14.1	25	85	8	470	33	0	20	46	1.55
18480749--18481099	76	4.7	77	87	8	510	33	0	20	46	1.55
18480749--18481101	51	7.0	51	84	7	474	33	0	20	46	1.55
18481109--18481253	39	3.8	39	68	11	111	44	5	0	48	1.30
18481137--18481285	74	2.0	74	100	0	298	40	6	1	51	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18481435--18481505	13	5.5	13	86	0	106	50	2	7	39	1.44
18481434--18481505	26	2.8	26	100	0	144	50	2	6	40	1.44
18481510--18481553	17	2.6	17	100	0	88	36	0	15	47	1.46
18484848--18484898	23	2.2	24	82	10	61	43	3	0	52	1.19
18484863--18484898	16	2.3	17	86	13	51	41	2	0	55	1.14
18485835--18486195	190	1.9	190	93	1	616	28	21	18	31	1.97
18486010--18486342	114	2.9	112	80	6	334	26	23	18	31	1.97
18488998--18489058	26	2.3	27	75	13	65	59	1	3	36	1.24
18496516--18496541	3	8.7	3	100	0	52	69	0	30	0	0.89
18503953--18504155	46	4.3	48	88	7	265	35	14	21	28	1.92
18503887--18504155	98	2.7	98	93	0	457	34	14	22	28	1.93
18504119--18504264	37	4.0	37	93	1	242	36	16	21	24	1.94
18510385--18510547	61	2.7	58	82	9	166	41	1	3	53	1.27
18511626--18511667	21	2.0	21	86	4	59	38	9	16	35	1.81
18523342--18523397	24	2.3	24	78	9	60	67	5	3	23	1.27
18525036--18525944	44	19.8	43	69	12	363	30	18	16	35	1.93
18525030--18525532	139	3.7	135	87	2	478	29	18	17	34	1.94
18525232--18525532	139	2.2	139	93	0	521	29	17	18	34	1.94
18525347--18525762	95	4.4	94	74	8	331	30	18	16	35	1.93
18525410--18525809	191	2.1	191	88	0	586	31	17	16	35	1.92
18525410--18525809	96	4.2	95	82	0	476	31	17	16	35	1.92
18532142--18532467	42	7.7	42	77	4	271	25	17	21	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18532848--18532898	21	2.4	21	90	0	75	1	45	17	35	1.60
18534408--18534511	45	2.3	44	80	11	113	42	18	7	31	1.78
18534620--18534698	39	2.0	38	85	9	106	51	21	11	15	1.74
18536020--18536046	12	2.2	12	100	0	54	40	0	0	59	0.98
18536581--18536638	13	4.2	13	77	12	53	48	39	0	12	1.40
18536579--18536628	13	3.6	13	81	10	55	44	42	0	14	1.44
18537704--18537755	23	2.3	23	100	0	104	17	11	23	48	1.79
18539918--18539952	18	2.0	17	88	5	52	45	0	0	54	0.99
18540062--18540096	18	2.0	17	88	5	52	45	0	0	54	0.99
18540258--18540352	45	2.1	45	88	1	138	32	27	5	34	1.79
18540331--18540363	16	2.1	16	94	0	57	30	36	0	33	1.58
18540344--18540386	21	2.0	21	95	0	77	34	37	0	27	1.57
18540693--18541360	114	5.9	113	81	2	703	28	22	16	32	1.96
18540693--18541338	228	2.8	226	85	2	828	28	22	16	32	1.96
18540706--18541360	342	1.9	342	82	3	809	28	23	16	31	1.96
18550623--18550723	3	33.3	3	97	2	193	66	0	0	32	0.99
18551239--18551280	19	2.2	19	86	0	57	7	2	11	78	1.04
18551853--18551894	22	2.0	21	90	4	66	57	0	2	40	1.12
18551854--18551900	17	2.8	17	75	18	53	55	0	2	42	1.12
18561647--18561686	3	13.3	3	89	0	62	32	2	2	62	1.22
18564214--18564242	15	2.0	15	93	6	51	68	0	0	31	0.89
18566606--18566641	18	2.0	18	88	0	54	33	19	2	44	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18566664--18566697	17	2.1	16	88	5	50	73	2	2	20	1.09
18583511--18583576	9	7.4	9	71	20	50	37	4	1	56	1.29
18583768--18583870	49	2.2	48	81	6	113	39	10	1	47	1.49
18585291--18585328	3	12.7	3	100	0	76	65	0	0	34	0.93
18585639--18585685	24	2.0	23	84	16	60	44	2	2	51	1.25
18590121--18590176	28	2.0	29	93	6	98	33	3	7	55	1.45
18594120--18594149	14	2.1	14	100	0	60	0	20	0	80	0.72
18601791--18601858	3	23.0	3	78	14	70	30	1	4	63	1.23
18613715--18613739	6	4.2	6	100	0	50	16	0	36	48	1.46
18615649--18615694	18	2.6	18	89	6	67	58	2	0	39	1.10
18615649--18615721	24	3.3	24	72	21	86	56	4	1	38	1.27
18618123--18618179	28	2.1	28	90	3	89	29	7	26	36	1.83
18621393--18621516	30	4.1	30	93	1	203	25	24	6	43	1.78
18621403--18621510	15	7.2	15	67	12	78	25	22	7	44	1.79
18623821--18624012	96	2.0	96	92	2	323	25	20	20	33	1.97
18626188--18626276	30	3.1	30	81	14	107	26	23	6	42	1.79
18626188--18626276	25	3.1	30	79	15	107	26	23	6	42	1.79
18626198--18626244	15	3.1	15	70	11	51	27	23	8	40	1.83
18629135--18629160	11	2.4	11	100	0	52	50	7	23	19	1.73
18631893--18632196	28	11.6	25	79	17	227	47	24	0	28	1.52
18631925--18632196	28	10.0	28	81	13	320	47	23	0	28	1.52
18631913--18632196	51	5.3	53	81	15	249	47	23	0	28	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18632047--18632108	23	2.8	20	97	0	61	46	19	0	33	1.50
18631945--18632175	90	2.7	88	85	12	308	47	25	0	27	1.52
18632277--18632500	112	2.0	112	99	0	439	38	14	11	35	1.81
18636104--18636245	72	2.0	71	98	0	266	21	30	25	21	1.98
18641803--18642090	85	3.4	85	97	0	544	32	23	20	23	1.98
18642024--18642255	125	1.9	124	88	4	351	33	23	14	28	1.94
18642001--18642265	125	2.1	124	84	4	347	31	24	14	29	1.95
18648556--18650172	109	14.9	109	98	0	3044	34	16	16	31	1.92
18652445--18652642	41	4.6	42	74	10	161	27	21	22	27	1.99
18652391--18652734	130	2.6	132	85	5	440	24	20	22	33	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141