genome.fa.s6.2.7.7.80.10.50.1000.109.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  42799318

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  109  of  141  ( 16820 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31441815--31442015	102	2.0	102	84	0	267	33	27	16	21	1.95
31453987--31454171	40	4.7	40	80	10	177	25	21	27	25	2.00
31453987--31454171	79	2.3	80	81	10	202	25	21	27	25	2.00
31458791--31458840	21	2.4	21	86	0	64	36	4	34	26	1.75
31458800--31458835	18	2.0	18	88	0	54	33	5	36	25	1.79
31470725--31470793	25	2.8	25	90	0	102	30	18	24	26	1.98
31475888--31475954	35	1.9	35	84	0	89	28	25	22	23	1.99
31478453--31478672	27	8.1	28	81	6	172	23	16	18	41	1.90
31478522--31478670	81	1.8	81	84	5	203	23	14	19	42	1.87
31480140--31480193	25	2.2	25	83	6	65	18	42	12	25	1.86
31483208--31483388	40	4.5	40	88	2	265	18	32	18	31	1.95
31483224--31483289	20	3.3	20	68	8	62	13	34	19	31	1.91
31483208--31483389	20	9.1	20	62	5	55	18	31	18	31	1.95
31491736--31491778	22	2.0	22	95	0	77	32	11	18	37	1.87
31492454--31492495	21	2.0	21	90	0	66	33	14	2	50	1.56
31492906--31492960	26	2.1	26	86	10	76	14	32	0	52	1.42
31495051--31495293	50	4.9	50	81	5	251	27	20	27	23	1.99
31495610--31495664	25	2.2	25	100	0	110	20	14	7	58	1.60
31520312--31520348	13	2.8	13	100	0	74	37	5	16	40	1.71
31530977--31531011	13	2.7	13	90	0	52	34	14	14	37	1.86
31532359--31532427	27	2.6	27	83	4	86	24	20	15	39	1.92
31532407--31532577	27	6.3	27	83	1	182	22	12	18	46	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31532377--31532543	81	2.1	82	78	7	180	23	15	18	42	1.88
31534084--31534138	25	2.2	25	90	0	83	16	45	12	25	1.83
31537310--31537478	40	4.2	40	86	1	241	20	30	18	30	1.96
31538211--31538240	12	2.5	12	88	0	51	33	40	20	6	1.78
31542777--31542828	22	2.4	22	93	0	86	32	15	19	32	1.93
31543499--31543539	21	2.0	21	90	0	64	36	12	0	51	1.40
31553064--31553178	58	2.0	58	96	0	212	39	9	29	21	1.85
31555188--31555265	29	2.7	28	84	11	104	25	14	30	29	1.94
31555218--31555545	174	1.9	174	95	1	595	29	14	24	31	1.95
31564505--31564696	42	4.5	41	77	11	147	35	24	18	21	1.95
31566413--31566508	40	2.4	41	83	1	131	41	19	23	14	1.89
31568602--31568969	72	5.1	72	79	3	321	33	4	14	47	1.65
31569308--31569379	36	2.1	34	82	15	85	56	8	2	31	1.43
31569735--31569764	13	2.3	13	94	0	51	50	3	10	36	1.53
31574896--31575137	50	4.9	50	82	3	229	28	20	28	22	1.98
31574897--31575088	100	1.9	100	84	2	260	27	20	30	21	1.98
31583196--31583271	38	2.0	38	100	0	152	39	10	15	34	1.82
31616486--31616712	40	5.7	40	94	0	391	29	20	28	21	1.98
31625184--31625811	40	15.7	40	99	0	1220	30	20	27	22	1.98
31627752--31627788	19	1.9	19	94	0	65	29	8	0	62	1.24
31629788--31629817	6	5.0	6	100	0	60	16	0	33	50	1.46
31637151--31637336	40	4.7	40	87	5	227	25	22	26	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31637204--31637369	80	2.1	79	83	7	203	27	20	25	25	1.99
31645208--31645393	40	4.7	40	86	5	218	25	21	26	25	1.99
31645261--31645426	80	2.1	79	82	7	194	28	19	25	25	1.99
31647187--31647312	40	3.2	40	78	3	110	22	22	20	34	1.96
31652097--31652145	24	2.0	24	100	0	98	28	0	20	51	1.48
31658873--31659026	28	5.5	28	96	0	265	33	28	12	25	1.92
31659771--31659795	10	2.5	10	100	0	50	44	0	8	48	1.32
31661175--31661229	22	2.5	23	80	11	62	12	9	3	74	1.18
31662364--31662418	28	2.0	28	82	7	67	61	1	30	5	1.29
31668883--31668923	16	2.7	16	88	7	59	51	0	7	41	1.30
31675237--31675274	16	2.4	16	86	4	51	47	15	0	36	1.46
31676807--31677004	50	3.8	50	82	4	198	27	21	28	22	1.99
31676818--31677004	100	1.8	104	80	6	229	26	20	29	22	1.99
31679076--31679138	27	2.2	31	81	16	73	41	0	6	52	1.27
31680697--31680733	16	2.2	18	85	9	51	32	2	5	59	1.34
31694659--31695080	48	8.8	48	87	4	491	33	8	29	28	1.87
31695279--31695383	37	2.8	37	91	0	165	22	20	30	26	1.98
31696104--31696168	33	2.0	33	100	0	130	35	15	12	36	1.85
31696679--31697350	40	16.8	40	90	1	1017	25	20	27	26	1.99
31699529--31699659	36	3.7	35	77	12	124	16	9	30	44	1.78
31700589--31700627	8	4.8	8	84	15	53	35	2	10	51	1.50
31701237--31701268	9	3.6	9	100	0	64	65	0	21	12	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31705865--31705913	18	2.6	18	83	6	62	48	2	4	44	1.33
31705927--31705974	22	2.3	21	85	7	62	27	4	8	60	1.44
31706332--31706656	161	2.0	161	96	0	596	26	20	24	28	1.99
31707393--31707436	22	2.0	21	83	12	54	40	0	0	59	0.98
31708398--31708429	16	2.0	16	100	0	64	31	12	0	56	1.37
31709603--31709632	14	2.1	14	93	0	51	16	43	0	40	1.48
31711086--31711234	75	2.0	77	92	5	250	37	3	8	51	1.48
31712166--31712308	41	3.5	41	81	1	135	19	21	25	32	1.97
31724537--31724964	106	4.0	106	99	0	829	32	12	26	29	1.92
31741619--31741663	22	2.0	22	100	0	90	13	22	26	37	1.91
31751506--31751538	15	2.2	15	94	0	57	45	3	18	33	1.65
31752506--31752552	24	1.9	24	86	4	67	36	0	38	25	1.56
31753032--31753163	27	4.9	26	77	9	122	45	21	15	17	1.85
31753031--31753159	53	2.4	53	87	7	172	45	21	15	17	1.85
31754843--31755129	51	5.6	51	75	6	260	30	26	17	25	1.97
31754841--31755074	102	2.3	102	98	0	459	30	26	17	24	1.97
31755324--31755700	50	7.6	50	74	5	343	30	26	18	24	1.97
31755372--31755721	48	7.1	48	69	14	221	30	27	17	24	1.97
31755322--31755721	149	2.7	149	98	0	766	30	27	17	24	1.97
31756859--31756913	26	2.1	26	93	0	92	21	21	21	34	1.97
31757023--31757183	28	5.8	28	88	5	222	22	24	24	27	2.00
31757015--31757182	55	3.0	56	86	6	236	23	23	23	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31757023--31757183	83	1.9	83	86	5	227	22	24	24	27	2.00
31770215--31770249	17	2.1	18	89	10	56	20	17	40	22	1.92
31770646--31770676	15	2.1	15	94	5	55	67	3	6	22	1.28
31778209--31778250	20	2.2	19	91	4	66	33	16	35	14	1.89
31780558--31780705	69	2.2	67	86	4	199	23	29	22	24	1.99
31782690--31782729	17	2.4	17	86	0	53	20	0	27	52	1.46
31784917--31784951	17	2.1	17	100	0	70	28	40	5	25	1.78
31798321--31798395	25	2.9	28	75	16	81	5	24	2	68	1.24
31798319--31798394	26	2.9	26	76	11	75	5	22	2	69	1.21
31798319--31798404	25	3.4	24	68	16	59	4	20	2	72	1.14
31798372--31798426	17	3.2	17	78	17	51	1	12	3	81	0.89
31800539--31800582	18	2.5	17	78	7	52	25	9	0	65	1.21
31802511--31802594	42	2.0	43	85	2	116	44	2	22	30	1.66
31814893--31814946	25	2.1	26	83	10	67	31	5	1	61	1.30
31822965--31823003	18	2.2	18	90	0	60	25	10	17	46	1.80
31837354--31837479	28	4.5	28	95	1	209	26	13	28	31	1.94
31844114--31844139	12	2.2	12	100	0	52	23	19	7	50	1.73
31844547--31844617	30	2.3	30	95	4	124	25	9	18	46	1.79
31850458--31850529	32	2.4	29	84	15	85	58	2	34	0	1.13
31852894--31853000	52	2.0	53	85	8	148	28	19	6	44	1.76
31863632--31863683	19	2.6	21	79	14	65	69	1	17	11	1.27
31868292--31868443	27	5.6	27	93	3	241	26	13	28	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31868292--31868443	55	2.8	55	94	0	259	26	13	28	30	1.94
31868723--31868829	54	2.0	54	94	0	187	32	9	31	26	1.88
31876197--31876346	56	2.7	56	85	5	171	26	13	29	30	1.94
31876222--31876346	28	4.5	28	91	2	182	27	13	28	30	1.94
31876222--31876346	55	2.3	55	90	2	189	27	13	28	30	1.94
31884139--31884181	19	2.2	20	84	12	63	32	18	0	48	1.48
31884348--31884535	51	3.7	51	82	3	193	31	29	15	22	1.95
31884354--31884536	101	1.8	101	88	5	280	32	30	15	21	1.95
31889784--31890018	128	1.8	128	91	1	391	37	16	11	34	1.85
31892362--31892395	16	2.1	16	100	0	68	52	8	5	32	1.56

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141