genome.fa.s6.2.7.7.80.10.50.1000.33.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  42799318

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  33  of  141  ( 16820 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9958920--9958980	29	2.1	30	85	11	83	60	18	0	21	1.36
9967591--9967989	195	2.0	198	92	3	660	40	3	21	35	1.70
9971666--9971703	13	2.8	14	80	19	53	21	5	7	65	1.38
9971714--9971743	15	2.0	15	93	0	51	16	0	16	66	1.25
9973573--9973658	39	2.2	40	93	2	147	25	6	3	63	1.35
9973990--9974016	14	1.9	14	100	0	54	33	0	0	66	0.92
9979081--9979119	19	2.0	21	85	10	55	69	5	10	15	1.34
9979259--9979315	3	19.3	3	77	16	57	68	1	0	29	1.00
9979690--9980017	44	7.6	44	70	17	152	26	24	21	27	1.99
9979727--9980151	44	9.9	43	72	15	231	27	24	21	27	1.99
9979727--9980159	217	2.0	215	92	0	722	27	24	21	27	1.99
9980153--9980535	125	3.1	125	96	0	685	25	24	20	30	1.98
9985613--9985647	18	1.9	18	100	0	70	42	5	0	51	1.25
9986751--9986790	3	13.3	3	84	10	55	67	0	2	30	1.04
9986753--9986804	12	4.1	12	81	16	52	69	1	1	26	1.10
9987010--9987048	19	2.0	21	85	10	55	69	5	10	15	1.34
9987243--9987318	21	3.7	21	85	7	111	36	11	9	42	1.74
9987256--9987319	19	3.3	19	93	4	101	37	14	9	39	1.78
9993743--9993782	20	1.9	22	90	10	66	35	17	12	35	1.88
9998824--9998864	17	2.4	18	80	15	52	78	0	2	19	0.87
10000738--10001169	44	9.7	44	78	6	404	28	21	18	31	1.97
10000772--10001174	132	3.0	134	82	5	467	28	21	18	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10000790--10001233	137	3.3	137	83	4	512	28	21	18	31	1.97
10002077--10002110	18	1.9	17	88	5	50	5	35	14	44	1.70
10007464--10007571	44	2.4	44	87	3	144	29	23	13	33	1.93
10008491--10008563	5	14.6	5	76	20	64	56	4	0	39	1.19
10008492--10008534	19	2.3	19	92	8	70	58	0	0	41	0.98
10008498--10008562	24	2.6	25	80	9	71	58	4	0	36	1.19
10021255--10021298	16	2.8	16	80	12	56	72	0	6	20	1.07
10024051--10024118	30	2.2	31	89	2	102	42	5	4	47	1.48
10039012--10039136	36	3.5	36	92	3	200	37	37	12	12	1.81
10039006--10039165	36	4.5	35	83	6	144	40	36	11	11	1.78
10042553--10042595	19	2.3	18	84	4	50	55	0	34	9	1.32
10051247--10051276	3	10.0	3	100	0	60	66	0	0	33	0.92
10052043--10052493	225	2.0	225	100	0	902	36	18	14	29	1.91
10052456--10052530	19	3.8	19	87	6	114	36	14	12	37	1.83
10053119--10053235	36	3.3	36	82	1	137	40	34	11	13	1.82
10056490--10056628	40	3.5	40	76	3	127	37	18	20	23	1.94
10056660--10057023	41	8.9	41	85	2	419	21	15	29	33	1.94
10057370--10057415	15	3.1	15	81	6	58	28	0	30	41	1.56
10057379--10057419	7	5.7	7	83	16	57	29	0	29	41	1.56
10057439--10057473	8	4.5	8	92	7	54	14	0	45	40	1.45
10057418--10057475	15	3.9	15	73	10	57	17	0	43	39	1.49
10057456--10057508	22	2.4	22	81	9	63	24	1	39	33	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10057673--10057704	15	2.1	15	94	0	55	25	0	34	40	1.56
10057682--10057719	14	2.7	15	84	12	53	28	0	28	42	1.56
10057666--10057746	21	3.8	21	73	11	67	25	0	34	39	1.56
10057297--10057894	295	2.0	299	87	6	856	28	2	26	42	1.68
10058716--10058765	21	2.3	22	89	3	75	26	34	0	40	1.56
10062162--10062279	43	2.8	41	77	9	114	27	14	27	30	1.95
10062176--10062400	43	5.3	43	77	5	179	27	16	28	27	1.97
10063845--10063881	18	2.0	19	89	5	58	62	5	5	27	1.39
10074347--10074530	72	2.6	72	99	0	359	41	23	6	27	1.79
10074531--10074556	3	8.7	3	100	0	52	69	0	0	30	0.89
10077605--10077932	72	4.6	72	99	0	638	42	24	6	26	1.78
10077933--10077964	3	10.7	3	100	0	64	68	0	0	31	0.90
10083168--10083211	20	2.1	21	83	4	54	25	0	15	59	1.37
10083193--10083234	22	1.9	22	85	9	59	30	2	16	50	1.58
10083438--10083481	21	2.1	21	82	0	52	61	4	4	29	1.36
10083708--10084024	159	2.0	158	97	0	598	28	15	18	37	1.91
10093989--10094015	11	2.5	11	100	0	54	40	11	22	25	1.87
10100606--10100939	67	5.0	65	77	8	251	24	23	16	36	1.94
10104613--10104676	34	1.9	33	83	3	83	48	26	10	14	1.76
10105561--10105688	20	6.4	20	71	3	105	32	19	32	15	1.93
10105538--10105665	40	3.2	40	83	6	143	31	17	32	18	1.94
10105601--10105688	40	2.2	40	91	0	140	31	20	32	14	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10105831--10106060	114	2.0	116	95	1	419	50	10	9	29	1.69
10116827--10116871	6	7.3	6	80	14	56	80	0	2	17	0.82
10116827--10116871	19	2.4	20	85	10	60	80	0	2	17	0.82
10125316--10125387	22	3.3	22	92	3	119	29	31	0	38	1.57
10125541--10125601	24	2.7	22	77	12	61	36	0	3	60	1.13
10127121--10127369	29	8.7	29	84	7	328	43	26	0	30	1.55
10127121--10127369	59	4.3	58	87	5	328	43	26	0	30	1.55
10127121--10127326	88	2.3	88	96	1	378	43	26	0	30	1.55
10127121--10127369	88	2.9	85	89	4	349	43	26	0	30	1.55
10127887--10128240	29	11.9	29	85	9	455	44	27	0	28	1.55
10127887--10128240	58	5.9	58	89	9	527	44	27	0	28	1.55
10127887--10128240	87	4.0	87	88	10	527	44	27	0	28	1.55
10128106--10128133	6	4.7	6	100	0	56	35	50	0	14	1.43
10128077--10128162	41	2.1	41	100	0	172	41	34	0	23	1.55
10128048--10128191	70	2.1	70	100	0	288	43	31	0	25	1.55
10129050--10129085	18	2.0	18	88	0	54	33	16	16	33	1.92
10129387--10129472	9	9.6	9	85	0	118	24	9	25	40	1.85
10129538--10129617	30	2.7	30	98	1	153	33	7	15	43	1.74
10132549--10132608	29	2.1	28	81	6	68	46	16	13	23	1.82
10134480--10134506	7	3.9	7	100	0	54	25	0	0	74	0.83
10137062--10137230	76	2.2	76	79	14	168	59	2	4	34	1.30
10137144--10137202	21	2.8	22	80	10	70	57	1	6	33	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10137191--10137254	18	3.5	18	71	12	67	59	3	6	31	1.38
10137245--10137276	16	1.9	16	93	6	55	81	0	3	15	0.82
10137264--10137362	19	5.3	19	70	20	50	64	2	3	30	1.20
10137294--10137343	18	2.8	17	82	8	64	68	2	4	26	1.18
10137935--10137978	22	1.9	24	86	9	65	43	2	13	40	1.57
10138007--10138060	19	2.7	19	76	23	58	40	5	14	38	1.70
10138649--10138744	37	2.6	37	88	1	138	34	9	26	30	1.88
10141938--10142001	32	2.0	32	93	3	112	32	15	12	39	1.85
10153022--10153056	12	2.9	12	91	0	61	71	0	14	14	1.15
10153212--10153274	26	2.4	26	81	5	74	39	6	22	31	1.79
10159485--10159513	14	2.0	15	93	6	51	27	0	20	51	1.47
10160666--10160822	43	3.7	43	77	10	153	25	19	27	28	1.98
10180663--10180817	78	2.0	77	92	1	256	47	8	14	29	1.73
10183571--10183620	25	2.1	25	85	7	68	56	2	4	38	1.30
10184572--10184663	10	9.0	10	71	16	57	39	5	1	54	1.31
10184619--10184663	11	4.1	12	80	13	53	46	0	0	53	1.00
10187075--10187179	30	3.5	30	78	7	122	23	35	17	23	1.95
10187097--10187179	16	5.4	16	72	7	64	22	37	18	21	1.94
10187207--10187257	23	2.2	24	78	7	59	27	15	17	39	1.90
10187213--10187258	23	2.0	23	86	0	65	26	17	15	41	1.88
10188012--10188039	12	2.3	12	100	0	56	0	25	42	32	1.55
10189122--10189157	14	2.5	15	86	9	56	33	27	19	19	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10201811--10201879	26	2.8	24	76	12	70	24	23	20	31	1.98
10204574--10204609	14	2.6	14	100	0	72	19	5	55	19	1.62
10204688--10204733	16	2.9	16	87	3	58	43	2	47	6	1.41
10205272--10205296	5	5.0	5	100	0	50	20	0	40	40	1.52
10205348--10205402	19	2.9	19	76	15	60	40	3	16	40	1.66
10212655--10212696	18	2.4	18	96	4	77	33	0	4	61	1.17
10214159--10214190	15	2.1	15	94	0	55	46	0	3	50	1.17
10224531--10224616	39	2.3	38	78	11	88	39	2	2	55	1.25
10237995--10238058	23	2.8	22	75	15	58	26	1	3	68	1.13
10242665--10242715	21	2.3	21	83	10	57	50	3	9	35	1.54

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141