genome.fa.s6.2.7.7.80.10.50.1000.124.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  42799318

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  124  of  141  ( 16820 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36812889--36812935	22	2.1	22	84	7	60	23	27	21	27	1.99
36813094--36813195	27	3.8	26	83	5	114	20	23	19	36	1.95
36813360--36813425	6	10.8	6	72	15	55	18	19	13	48	1.81
36813332--36813404	31	2.4	31	85	0	92	16	20	15	47	1.82
36814552--36814666	43	2.7	43	79	1	142	31	14	23	30	1.95
36823047--36823115	34	2.0	35	85	5	95	26	21	24	27	1.99
36828694--36828718	13	1.9	13	100	0	50	32	20	16	32	1.94
36829265--36829440	27	6.5	26	84	2	163	27	14	26	30	1.95
36829264--36829419	82	1.9	81	87	6	226	28	14	26	30	1.95
36829260--36829437	82	2.2	81	81	5	216	28	14	25	30	1.95
36838830--36838890	30	2.0	30	83	0	77	31	22	8	37	1.84
36843737--36843790	27	2.0	27	85	3	74	35	20	22	22	1.96
36843809--36843905	27	3.6	26	77	5	86	21	15	21	41	1.90
36844969--36845061	33	3.0	33	72	18	90	26	24	21	26	1.99
36848655--36848799	40	3.6	40	85	0	191	25	25	26	22	2.00
36849928--36850296	184	2.0	184	100	0	738	37	13	20	28	1.91
36851838--36851891	27	2.0	27	85	0	72	38	18	7	35	1.79
36853108--36853152	20	2.2	20	88	0	63	48	2	13	35	1.54
36855820--36855875	21	2.4	24	82	14	73	32	5	23	39	1.77
36857763--36857841	32	2.5	32	89	0	113	25	26	21	26	1.99
36857784--36857851	32	2.4	26	70	25	64	29	25	17	27	1.97
36860179--36861764	47	33.6	47	96	1	2782	28	29	9	32	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36863256--36863280	13	1.9	13	100	0	50	36	16	16	32	1.90
36864941--36864980	16	2.5	16	100	0	80	50	0	5	45	1.23
36873493--36873559	33	1.9	33	82	8	80	46	10	31	11	1.75
36888671--36888707	12	3.1	12	92	7	58	37	24	13	24	1.91
36898267--36898317	25	2.0	25	88	7	77	33	23	11	31	1.91
36898283--36898330	25	1.9	25	86	0	69	41	20	8	29	1.81
36911393--36911501	37	2.9	37	87	0	155	26	28	19	25	1.99
36911710--36911873	47	3.5	47	93	0	265	25	30	11	32	1.91
36912031--36912127	47	2.1	47	88	0	140	26	31	10	30	1.90
36914316--36915174	85	10.1	85	99	0	1709	26	26	8	38	1.84
36929739--36929786	21	2.3	21	82	7	53	33	4	16	45	1.67
36934527--36934714	51	3.7	50	81	6	209	30	27	16	25	1.97
36942047--36942092	22	2.1	22	84	15	60	41	4	0	54	1.20
36942058--36942090	16	2.1	16	88	11	50	42	3	0	54	1.15
36958305--36958360	30	1.9	30	85	3	78	17	25	0	57	1.41
36959363--36959401	11	3.6	11	96	3	71	12	0	7	79	0.93
36963325--36963513	30	6.4	30	76	6	154	41	14	24	20	1.89
36963296--36963545	119	2.1	119	86	0	338	38	14	25	22	1.91
36965403--36965589	40	4.7	40	93	0	320	21	28	20	29	1.98
36972717--36972746	15	2.0	15	100	0	60	40	13	0	46	1.43
37005687--37005745	22	2.7	22	91	0	91	22	33	16	27	1.95
37008155--37008192	20	1.9	20	88	0	58	31	15	5	47	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37011335--37011520	50	3.6	50	76	7	133	28	20	26	24	1.99
37017665--37017694	11	2.7	11	94	0	51	36	3	0	60	1.14
37017706--37017735	15	1.9	16	93	6	53	36	13	0	50	1.42
37025673--37025726	25	2.2	25	83	12	67	55	0	3	40	1.17
37045644--37045677	17	1.9	18	88	5	52	47	32	2	17	1.63
37048192--37048361	85	2.0	85	89	2	261	41	3	22	32	1.71
37056995--37057020	11	2.4	11	100	0	52	84	7	0	7	0.77
37058757--37058884	49	2.6	49	79	1	139	33	25	13	27	1.93
37064145--37064280	50	2.7	52	86	5	197	30	28	16	24	1.96
37064136--37064271	51	2.7	50	87	3	193	30	28	16	24	1.97
37066270--37066298	8	3.6	8	100	0	58	75	0	0	24	0.80
37066301--37066418	35	3.1	35	64	25	87	50	8	0	40	1.33
37066301--37066456	78	2.0	78	98	0	303	48	10	0	41	1.38
37068602--37068643	17	2.6	17	92	7	70	73	0	19	7	1.05
37074838--37075327	101	4.8	101	97	0	901	31	26	18	23	1.98
37078487--37078677	51	3.8	52	77	9	205	29	27	18	24	1.98
37078485--37078668	101	1.8	102	88	5	284	30	27	18	23	1.98
37078480--37078703	101	2.2	102	77	8	233	29	27	17	25	1.98
37081603--37081985	199	1.9	199	90	1	606	34	23	13	27	1.92
37085410--37085472	25	2.6	23	85	9	65	25	17	25	31	1.97
37085418--37085489	25	2.9	25	83	4	92	26	15	27	30	1.96
37089485--37089579	47	2.0	47	93	0	163	30	28	15	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37095773--37095842	21	3.4	21	77	16	76	38	12	27	21	1.90
37095723--37095865	40	3.5	40	80	4	162	34	16	28	19	1.94
37095723--37095954	41	5.7	41	74	6	168	36	14	27	21	1.92
37099021--37099053	18	1.9	17	88	11	50	54	0	0	45	0.99
37099154--37099217	34	1.9	34	90	3	103	59	4	0	35	1.18
37099224--37099708	244	2.0	246	84	4	647	45	8	8	37	1.64
37102212--37102437	112	2.0	111	97	0	425	43	4	17	34	1.71
37109920--37110064	49	2.9	50	76	6	132	23	28	19	28	1.98
37122179--37123311	96	11.8	96	98	0	2153	33	9	29	27	1.88
37123264--37123622	180	2.0	180	100	0	718	26	20	25	27	1.99
37123610--37123717	37	2.9	37	92	0	171	23	21	29	25	1.99
37127426--37127463	20	1.9	20	94	0	67	68	2	10	18	1.30
37127423--37127462	10	4.0	10	84	12	55	70	2	10	17	1.27
37127855--37127892	18	2.1	18	95	0	67	31	36	0	31	1.58
37132976--37133175	51	3.9	50	78	7	206	26	15	27	32	1.95
37136961--37137008	22	2.3	21	80	20	57	43	14	22	18	1.87
37137246--37137311	31	2.2	30	86	13	91	45	0	0	54	0.99
37139915--37139972	22	2.6	22	84	7	73	43	17	3	36	1.66
37139928--37140004	19	3.8	19	87	6	100	40	16	6	36	1.75
37140513--37141532	132	7.8	132	94	1	1715	24	23	20	31	1.98
37140569--37141522	44	21.7	44	64	10	275	24	24	20	30	1.98
37141509--37141743	44	5.4	44	80	7	255	31	25	15	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37146348--37146828	235	2.1	234	97	0	899	43	13	17	25	1.85
37146816--37147317	252	2.0	251	96	0	923	37	21	10	29	1.88
37147263--37147320	22	2.6	22	84	7	73	43	17	3	36	1.66
37147276--37147352	19	3.8	19	87	6	100	40	16	6	36	1.75
37150379--37150412	18	1.9	17	88	5	50	67	2	0	29	1.05
37150844--37150876	13	2.4	14	90	5	50	72	0	6	21	1.05
37154524--37154558	15	2.3	15	90	0	52	62	11	2	22	1.41
37154804--37154841	18	2.1	19	90	5	60	42	0	13	44	1.43
37154922--37154976	21	2.7	20	80	5	56	54	3	7	34	1.46
37154967--37155032	26	2.5	27	80	14	75	69	7	0	22	1.13
37157211--37157301	42	2.2	42	82	4	103	26	25	30	17	1.97
37166271--37166324	13	4.1	13	75	13	56	29	7	27	35	1.84
37166574--37166635	21	3.1	19	78	17	54	50	3	1	45	1.27
37168325--37168733	72	5.7	72	90	2	583	54	15	6	23	1.64
37175100--37175289	43	4.4	43	85	2	220	42	17	16	22	1.89
37185400--37185467	35	2.0	35	82	8	86	32	20	25	22	1.98
37211592--37211622	13	2.4	13	100	0	62	32	12	0	54	1.38
37214013--37214045	17	1.9	17	88	11	50	42	9	6	42	1.61
37214308--37214375	29	2.3	29	87	0	100	33	11	30	23	1.91
37214364--37214435	29	2.5	30	84	6	94	41	11	29	18	1.84
37214306--37214613	30	10.4	30	75	6	175	37	13	26	22	1.91
37214363--37214583	60	3.7	59	76	5	196	39	13	25	21	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37215179--37215228	25	2.0	25	96	0	91	40	6	22	32	1.78
37217709--37217759	24	2.1	24	100	0	102	47	7	11	33	1.69
37231321--37231352	5	6.4	5	100	0	64	40	0	18	40	1.51
37232035--37232171	61	2.2	61	92	0	220	24	2	24	48	1.65
37232155--37232216	22	2.7	23	87	12	101	16	6	22	54	1.64
37233381--37233469	37	2.4	37	92	0	151	42	14	7	34	1.75
37233684--37233749	33	2.0	33	100	0	132	42	15	6	36	1.71
37237561--37237598	3	12.7	3	100	0	76	68	0	0	31	0.90
37245744--37245772	14	2.1	14	100	0	58	34	0	27	37	1.57
37245937--37246141	69	3.0	68	75	9	198	54	3	7	34	1.46

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141