genome.fa.s6.2.7.7.80.10.50.1000.31.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  42799318

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  31  of  141  ( 16820 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9497506--9497564	26	2.4	25	86	8	77	50	3	6	38	1.45
9497522--9497933	40	10.5	40	68	22	178	44	2	10	42	1.53
9497506--9497612	23	4.8	23	73	22	77	47	2	8	41	1.48
9497555--9497780	57	4.0	57	96	0	398	42	3	10	43	1.55
9497743--9497813	23	3.2	23	71	15	67	46	4	7	42	1.50
9497726--9497933	40	4.7	41	72	21	179	43	2	11	42	1.53
9497775--9498016	57	4.5	57	78	17	304	43	1	11	43	1.50
9497669--9497987	97	3.2	97	93	4	541	43	2	10	43	1.53
9499350--9499389	11	3.7	11	93	3	64	27	27	10	35	1.89
9500815--9500844	14	2.1	14	100	0	60	53	6	13	26	1.64
9500980--9501322	71	4.8	71	98	0	652	50	18	5	26	1.68
9501629--9501675	22	2.1	22	96	0	85	40	23	8	27	1.83
9502657--9502724	15	4.4	15	76	12	57	42	26	2	27	1.70
9502817--9502887	14	5.0	14	69	16	56	40	35	1	22	1.63
9503124--9503329	113	1.8	115	84	2	290	28	23	18	29	1.98
9503239--9503769	226	2.5	208	85	9	708	27	21	18	32	1.96
9503337--9503886	226	2.4	224	86	3	719	27	21	18	32	1.97
9503337--9504000	113	5.9	113	78	6	571	27	22	18	31	1.97
9503337--9503969	226	2.8	225	82	5	650	27	22	18	31	1.97
9503349--9503992	338	1.9	339	80	6	752	27	22	18	31	1.97
9504151--9504177	12	2.2	12	100	0	54	51	25	14	7	1.68
9509961--9510072	56	2.0	56	98	0	215	8	29	3	58	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9510857--9510950	7	13.4	7	73	0	71	22	2	34	41	1.66
9510858--9510923	28	2.4	28	89	0	96	22	1	36	39	1.64
9517715--9517772	23	2.5	23	86	5	73	22	15	27	34	1.94
9520821--9520884	20	3.2	20	84	8	87	39	1	4	54	1.31
9527393--9527429	19	2.0	19	89	5	58	37	0	5	56	1.22
9527361--9527440	25	3.8	21	73	19	60	41	0	3	55	1.18
9527398--9527440	18	2.2	20	84	12	54	39	0	4	55	1.20
9532620--9532675	21	2.7	21	81	13	71	35	10	14	39	1.81
9533058--9533124	32	2.1	32	82	0	80	43	2	0	53	1.16
9533353--9533413	26	2.3	26	94	0	104	37	14	13	34	1.85
9536876--9537022	68	2.1	68	82	1	177	42	14	14	28	1.85
9540166--9540219	24	2.3	24	87	3	74	62	12	12	11	1.54
9543217--9543259	19	2.3	19	84	11	54	39	0	0	60	0.97
9543217--9543264	13	3.8	13	76	20	57	39	0	0	60	0.97
9545792--9545840	21	2.3	21	79	6	55	26	26	36	10	1.88
9545948--9546133	60	3.1	59	72	8	171	24	30	21	23	1.99
9553616--9553749	46	2.8	49	76	16	147	29	27	20	22	1.98
9553823--9553879	29	2.0	29	96	0	105	21	31	17	29	1.96
9555063--9555105	18	2.4	18	100	0	86	34	16	25	23	1.95
9568055--9568164	44	2.6	44	77	7	120	31	20	19	28	1.97
9568158--9568647	267	1.8	267	88	0	755	26	25	20	27	1.99
9580628--9580666	21	1.9	19	90	10	60	76	2	7	12	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9582966--9583007	11	3.7	12	79	20	54	40	0	30	28	1.57
9586503--9586535	15	2.1	16	88	5	50	30	0	0	69	0.88
9594939--9594978	20	2.0	20	95	0	71	15	22	5	57	1.57
9598590--9598675	9	9.0	9	78	16	93	33	0	3	62	1.12
9598593--9598674	21	4.2	19	78	15	87	31	0	3	64	1.11
9598602--9598674	10	7.3	11	68	17	52	32	0	2	64	1.08
9602107--9602170	33	1.9	33	83	0	83	23	34	9	32	1.87
9605490--9605556	33	2.0	33	97	0	125	56	8	25	8	1.59
9605857--9605883	3	9.0	3	100	0	54	66	0	0	33	0.92
9606205--9606259	6	9.2	6	97	0	101	0	18	50	30	1.47
9607975--9608038	22	2.8	23	70	15	60	39	4	4	51	1.44
9613777--9613902	38	3.2	38	66	14	110	56	4	3	34	1.39
9613775--9613907	42	3.2	42	65	11	121	57	4	3	33	1.37
9613751--9613912	81	2.0	82	97	1	308	54	4	3	37	1.38
9618347--9618601	127	2.0	127	99	0	501	41	14	9	35	1.77
9619276--9619335	25	2.4	23	82	17	68	61	5	5	28	1.38
9619202--9619341	75	1.9	73	82	8	176	57	4	6	31	1.43
9619400--9619455	22	2.5	22	83	8	69	50	3	0	46	1.19
9619480--9619530	25	2.1	25	85	10	70	66	3	0	29	1.09
9620965--9622070	101	11.0	101	88	1	1423	26	24	20	28	1.99
9620958--9622070	404	2.8	402	90	1	1701	26	24	20	28	1.99
9620963--9622055	50	21.7	50	65	3	351	26	24	20	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9623429--9623474	15	3.1	15	87	12	60	13	17	0	69	1.19
9623431--9623480	22	2.3	22	86	10	68	14	14	0	72	1.14
9623431--9623480	7	7.0	7	81	18	59	14	14	0	72	1.14
9623431--9623480	15	3.5	14	86	13	59	14	14	0	72	1.14
9624632--9624661	14	2.1	14	100	0	60	20	0	36	43	1.52
9624631--9624685	21	2.6	21	79	0	65	25	1	32	40	1.66
9624682--9624794	57	2.0	57	91	0	181	24	2	23	48	1.64
9624812--9624856	14	3.2	13	90	6	54	26	0	37	35	1.57
9624824--9624862	7	5.6	7	96	0	69	23	0	46	30	1.53
9624819--9624898	7	11.3	7	82	2	52	21	0	42	36	1.53
9625243--9625642	200	2.0	200	99	0	782	25	16	17	40	1.90
9630029--9630058	14	2.1	14	100	0	60	20	0	36	43	1.52
9630028--9630082	21	2.6	21	79	0	65	25	1	32	40	1.66
9631777--9631810	13	2.6	13	95	0	59	23	32	14	29	1.94
9633503--9633560	21	2.8	21	89	10	84	29	3	0	67	1.07
9634107--9634199	43	2.2	43	94	0	159	20	15	31	33	1.93
9636061--9636102	19	2.2	19	86	0	57	47	21	19	11	1.81
9636968--9637017	25	2.0	26	88	4	75	44	6	10	40	1.63
9640621--9640709	25	3.1	30	81	15	116	26	25	5	41	1.77
9640631--9640677	15	3.1	15	70	11	51	27	23	8	40	1.83
9645290--9645368	25	2.9	27	87	12	117	25	22	6	45	1.76
9649410--9649450	22	1.9	21	85	5	55	70	2	4	21	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9664090--9664132	20	2.2	20	86	0	59	72	4	2	20	1.14
9688270--9688345	38	2.0	38	100	0	152	55	7	13	23	1.64
9693611--9693637	7	3.9	7	100	0	54	85	0	0	14	0.61
9697340--9697371	16	2.0	16	93	0	55	46	6	12	34	1.67
9700830--9700856	7	3.9	7	100	0	54	85	0	0	14	0.61
9709483--9709507	3	8.3	3	100	0	50	68	0	0	32	0.90
9709926--9709959	15	2.2	15	89	5	50	61	2	0	35	1.11
9713595--9713658	29	2.2	29	86	8	85	54	3	7	34	1.45
9715783--9715829	19	2.5	19	93	3	78	40	4	10	44	1.59
9715851--9715935	43	2.0	43	92	0	143	29	4	12	52	1.59
9719063--9719469	41	9.9	41	88	1	564	18	23	28	28	1.98
9719063--9719469	124	3.3	122	88	1	571	18	23	28	28	1.98
9719580--9719630	22	2.3	20	78	18	57	47	5	3	43	1.46
9720308--9720358	21	2.5	20	81	15	59	27	1	33	37	1.68
9722634--9722908	124	2.2	124	100	0	550	30	9	19	40	1.84
9724980--9725242	43	6.1	43	84	4	239	25	19	27	27	1.99
9725248--9725290	22	2.0	22	85	0	59	41	23	20	13	1.88
9734584--9734656	37	2.0	36	86	10	103	60	1	2	35	1.20
9734821--9734881	30	2.0	30	87	6	88	37	0	40	21	1.53
9737262--9737287	12	2.2	12	100	0	52	30	7	15	46	1.74
9738694--9738721	13	2.2	13	100	0	56	53	14	0	32	1.41
9739136--9739175	20	2.0	20	90	0	62	50	12	10	27	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9739124--9739190	34	1.9	35	87	3	100	46	11	8	32	1.72
9739159--9739198	14	2.9	14	84	0	53	42	17	7	32	1.77
9740454--9740641	61	3.1	61	69	17	192	48	6	1	43	1.39
9740534--9740580	16	3.0	16	78	12	53	51	2	0	46	1.13
9740417--9740686	120	2.2	120	96	0	495	48	5	2	42	1.41
9743859--9743924	33	2.0	33	96	0	123	36	4	16	42	1.69
9749177--9749246	28	2.5	28	75	8	81	55	12	27	4	1.56
9749582--9749625	21	2.1	21	82	0	52	25	4	4	65	1.30
9749604--9749628	13	1.9	13	100	0	50	32	0	4	64	1.12
9749980--9750023	19	2.4	19	82	14	56	47	2	0	50	1.13

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141