genome.fa.s6.2.7.7.80.10.50.1000.127.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  42799318

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  127  of  141  ( 16820 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38041001--38041239	50	4.7	51	79	6	218	27	21	27	23	1.99
38048591--38048830	50	4.7	50	80	9	186	28	22	26	22	1.99
38055974--38056086	36	3.0	36	85	7	138	21	20	26	31	1.98
38055960--38056167	40	5.3	40	83	8	214	23	20	27	28	1.99
38060988--38061133	40	3.7	40	84	5	188	26	28	22	23	1.99
38063537--38064122	293	2.0	293	100	0	1172	31	18	22	27	1.97
38076804--38076907	37	2.8	39	81	8	110	38	2	4	53	1.37
38076847--38076895	25	1.9	26	84	12	66	42	2	6	48	1.39
38076886--38077003	62	2.0	62	83	5	152	44	3	3	49	1.36
38094112--38094158	16	2.9	16	78	6	51	61	12	21	4	1.48
38101711--38102930	406	3.0	406	95	0	2142	26	21	16	35	1.95
38105904--38105941	18	2.1	18	90	0	58	5	5	21	68	1.29
38105949--38105985	11	3.4	11	84	0	56	18	13	8	59	1.58
38105923--38105991	22	3.2	22	77	2	59	15	8	14	60	1.57
38106830--38107037	10	21.4	9	65	21	50	59	3	1	35	1.25
38106830--38106872	22	2.0	21	86	13	61	65	2	0	32	1.06
38106907--38106983	31	2.4	32	81	12	88	51	5	1	41	1.32
38106907--38106988	32	2.6	31	81	9	87	54	4	1	39	1.29
38106962--38106999	12	3.1	13	85	11	53	68	0	2	28	1.03
38106975--38107037	9	6.4	10	76	12	51	61	1	3	33	1.21
38106961--38107038	20	3.9	19	70	14	59	62	1	2	33	1.17
38107460--38107504	21	2.1	22	91	4	74	28	8	0	62	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38107471--38107509	21	1.9	21	89	5	62	33	7	0	58	1.26
38107529--38107568	21	1.9	21	84	0	53	35	2	10	52	1.48
38108898--38108950	26	2.0	26	88	0	79	67	0	3	28	1.07
38108905--38108979	18	4.3	19	69	16	54	64	0	1	34	1.02
38113828--38113865	10	3.9	10	79	6	51	60	2	0	36	1.11
38114073--38114143	21	3.4	21	74	3	81	35	1	9	53	1.43
38114071--38114166	41	2.3	41	84	8	133	38	3	8	50	1.49
38114599--38114624	6	4.3	6	100	0	52	15	0	0	84	0.62
38116857--38116898	19	2.2	19	86	4	57	40	2	0	57	1.12
38116914--38116957	19	2.3	19	84	7	54	70	2	2	25	1.10
38117128--38117198	36	2.0	36	88	0	106	33	15	22	28	1.95
38118094--38118181	44	2.0	44	90	0	140	46	4	11	37	1.60
38125294--38125370	38	2.0	38	97	0	145	29	40	1	28	1.65
38131593--38131939	82	4.2	82	88	1	482	32	23	17	26	1.96
38131596--38131940	41	8.4	41	84	3	437	33	22	17	26	1.96
38134667--38134786	57	2.1	58	87	6	181	26	20	7	45	1.77
38141074--38141159	30	2.9	30	80	1	102	23	13	11	51	1.74
38141080--38141214	29	4.6	29	80	0	135	25	17	8	48	1.75
38141074--38141214	58	2.4	59	84	1	176	25	16	8	49	1.73
38142248--38142348	37	2.7	37	78	0	103	31	5	17	44	1.73
38143887--38143932	23	2.0	23	87	8	67	21	26	2	50	1.60
38143890--38143957	11	6.2	11	74	5	57	23	33	1	41	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38144531--38144598	11	6.3	10	71	15	55	23	30	0	45	1.53
38144529--38144593	23	3.0	21	82	10	85	23	30	0	46	1.53
38143373--38144649	643	2.0	644	98	0	2475	30	21	12	35	1.90
38146397--38146439	18	2.4	18	84	0	50	18	25	9	46	1.79
38152421--38152712	50	5.9	50	86	2	340	26	21	29	21	1.99
38156214--38156505	126	2.3	126	92	2	480	28	19	18	34	1.95
38156538--38156848	96	3.2	96	82	6	331	39	19	2	37	1.67
38156883--38156937	27	1.9	29	89	10	87	45	43	1	9	1.46
38161876--38161916	21	2.0	21	85	0	55	21	26	21	29	1.99
38167235--38167433	86	2.3	85	74	8	197	38	17	10	33	1.84
38167253--38167412	86	1.9	85	85	3	223	36	17	12	33	1.87
38167818--38167885	9	7.6	9	73	12	59	27	2	1	67	1.13
38167970--38168198	92	2.6	89	76	13	245	36	10	17	36	1.83
38182914--38182943	12	2.5	12	100	0	60	50	10	23	16	1.75
38196820--38196852	16	1.9	18	88	11	52	24	42	0	33	1.55
38199845--38199947	25	4.2	25	73	8	95	20	28	21	30	1.98
38201647--38201718	31	2.5	30	84	10	96	31	2	4	61	1.29
38201814--38201864	26	2.0	25	81	7	59	27	1	9	60	1.39
38218096--38218224	66	2.0	66	84	6	172	51	10	12	26	1.71
38218651--38218681	15	2.1	15	93	0	53	12	35	12	38	1.82
38220946--38220982	11	3.3	11	92	3	56	16	8	27	48	1.74
38233147--38233205	21	2.8	21	84	7	66	33	3	6	55	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38242353--38242402	20	2.5	20	83	6	66	46	14	10	30	1.77
38246930--38246978	22	2.2	22	88	0	71	38	12	32	16	1.86
38251011--38251065	21	2.8	20	91	5	85	34	10	18	36	1.86
38259811--38259956	45	3.3	45	67	14	131	30	17	25	26	1.98
38259459--38261076	351	4.6	351	86	1	2211	27	24	24	23	2.00
38260296--38260431	43	3.1	43	65	4	110	25	26	27	20	1.99
38260491--38260629	44	3.2	44	67	15	124	23	25	26	23	2.00
38260535--38260675	43	3.2	44	68	12	128	24	26	24	24	2.00
38259381--38261071	88	19.2	88	85	3	1873	27	24	24	23	2.00
38261050--38261328	44	6.3	43	73	10	217	27	14	26	31	1.95
38261058--38261328	132	2.1	132	90	1	427	26	14	26	32	1.95
38267131--38267193	33	1.9	33	84	12	85	50	3	0	46	1.17
38273019--38273185	47	3.6	47	89	0	244	31	8	31	28	1.87
38277825--38277870	6	7.7	6	92	0	74	19	19	60	0	1.36
38278128--38278159	5	6.4	5	96	0	55	59	0	18	21	1.38
38283722--38283755	17	2.0	17	88	0	50	2	14	2	79	0.97
38285403--38285450	18	2.5	19	76	6	53	56	12	10	20	1.65
38286503--38286551	21	2.3	21	82	6	64	79	4	10	6	1.03
38286516--38286555	19	2.0	21	90	9	66	72	5	12	10	1.26
38287252--38287602	46	7.3	46	77	10	353	29	25	17	28	1.97
38287265--38287615	51	7.2	51	82	9	421	29	26	17	27	1.97
38287265--38287597	97	3.4	97	86	7	430	29	25	17	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38291089--38291139	23	2.2	23	92	0	84	41	21	9	27	1.84
38294415--38294525	57	1.9	57	90	3	179	18	24	17	39	1.92
38298165--38298258	48	2.0	48	97	0	179	24	12	35	27	1.92
38298397--38298450	24	2.2	24	83	0	63	12	18	22	46	1.83
38298587--38298634	24	2.0	24	84	8	62	41	6	20	31	1.77
38300851--38300884	16	2.1	16	88	0	50	44	20	14	20	1.87
38303655--38303859	21	9.9	21	97	2	387	38	13	9	38	1.78
38304170--38304284	44	2.7	44	80	12	139	27	20	20	30	1.98
38304252--38304625	44	8.8	42	67	16	171	28	23	20	27	1.99
38304220--38304636	213	1.9	214	90	2	667	28	23	20	28	1.99
38304587--38304888	44	6.8	44	65	12	125	25	24	20	30	1.98
38304630--38305827	125	9.4	125	91	3	1613	24	24	20	30	1.99
38304630--38305827	257	4.7	256	89	3	1700	24	24	20	30	1.99
38307070--38307119	8	6.7	7	80	8	55	12	14	2	72	1.22
38307064--38307109	22	2.1	22	92	8	76	13	13	0	73	1.09
38307071--38307119	22	2.2	21	82	10	53	12	14	2	71	1.23
38311985--38312023	19	2.0	21	85	10	55	69	5	10	15	1.34
38312221--38312296	21	3.7	21	87	7	120	36	11	10	40	1.76
38312234--38312297	19	3.3	19	93	4	101	37	14	9	39	1.78
38313086--38313125	19	2.0	21	90	9	66	70	10	15	5	1.32
38314878--38314951	34	2.2	34	83	9	89	36	5	5	52	1.47
38315063--38315708	89	7.6	83	75	12	378	33	13	9	43	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38315066--38315357	158	1.9	157	79	9	335	30	15	10	44	1.80
38315223--38315708	89	5.6	88	80	8	417	34	12	10	43	1.76
38315224--38315624	177	2.3	179	80	9	434	34	13	10	41	1.79
38321066--38321151	33	2.8	30	78	15	102	34	6	8	50	1.59
38321291--38321338	9	5.6	8	78	11	51	66	2	0	31	1.03
38328975--38329353	190	2.0	189	96	0	704	26	15	17	41	1.89
38347248--38347345	31	3.4	31	72	16	75	30	7	17	44	1.75
38347348--38347598	92	2.7	92	91	0	394	33	7	18	40	1.79
38347346--38347591	31	8.0	31	68	18	156	33	7	18	39	1.80
38347348--38347592	61	4.0	61	70	18	184	33	7	18	40	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141