genome.fa.s6.2.7.7.80.10.50.1000.122.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  42799318

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  122  of  141  ( 16820 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36192287--36192509	39	5.7	40	85	8	266	25	22	27	24	2.00
36192287--36192509	79	2.8	81	84	9	282	25	22	27	24	2.00
36192287--36192542	79	3.3	79	81	10	217	26	21	27	24	1.99
36200451--36200485	12	2.9	12	95	0	61	40	25	22	11	1.88
36203945--36203992	24	2.0	24	92	4	80	12	20	6	60	1.54
36203953--36203992	12	3.3	12	82	0	53	12	20	5	62	1.48
36203976--36204015	18	2.3	18	91	4	64	7	17	5	70	1.30
36203976--36204028	18	2.9	18	83	8	54	13	16	5	64	1.47
36204022--36204068	15	3.1	15	81	9	51	12	17	2	68	1.31
36208936--36208975	21	1.9	21	84	0	53	50	2	27	20	1.61
36210695--36210746	27	1.9	27	88	7	79	23	32	17	26	1.96
36210722--36210778	10	5.8	10	78	13	57	22	26	17	33	1.96
36210720--36210776	20	2.9	20	89	2	89	22	28	17	31	1.97
36210722--36210797	20	3.9	21	78	14	74	23	26	15	34	1.95
36211486--36211614	67	1.9	67	100	0	258	30	22	20	27	1.98
36223850--36223887	19	2.0	20	94	5	69	18	34	10	36	1.85
36223852--36223897	20	2.3	19	85	7	56	23	34	10	30	1.89
36228712--36228903	96	2.0	97	96	1	359	26	26	12	34	1.92
36233787--36233826	15	2.7	15	81	14	55	7	30	0	62	1.23
36233835--36233878	19	2.2	20	84	11	56	6	18	2	72	1.17
36233847--36233897	23	2.5	20	84	12	59	5	19	0	74	1.02
36233847--36233897	24	2.2	23	82	10	59	5	19	0	74	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36235598--36235624	14	1.9	14	100	0	54	59	33	0	7	1.25
36254128--36254173	21	2.1	22	84	4	58	67	2	23	6	1.25
36258506--36258559	28	2.0	27	85	3	72	12	14	9	62	1.53
36260494--36260575	30	2.9	28	85	8	112	52	15	10	20	1.73
36260710--36260757	20	2.4	20	89	0	78	41	16	20	20	1.90
36265186--36265240	20	2.8	20	80	0	74	41	16	18	23	1.89
36265437--36265467	12	2.6	12	100	0	62	32	6	19	41	1.77
36271789--36271829	21	2.0	21	85	0	55	65	0	24	9	1.22
36278663--36278707	20	2.2	20	92	0	72	35	13	24	26	1.92
36278663--36278726	20	3.2	20	84	4	67	35	12	26	25	1.91
36279416--36279847	216	2.0	216	100	0	864	31	20	19	29	1.97
36285449--36285498	18	2.5	20	87	9	68	74	2	20	4	1.08
36293461--36293883	231	1.8	232	80	7	509	49	17	14	18	1.79
36297373--36298871	749	2.0	749	100	0	2998	26	15	19	38	1.91
36301979--36302008	16	1.9	15	93	6	51	13	36	3	46	1.60
36304486--36304525	18	2.4	16	87	8	53	17	15	0	67	1.23
36304535--36304654	6	19.5	6	67	5	60	10	17	2	70	1.27
36304586--36304669	12	6.8	12	70	12	62	9	16	1	72	1.17
36304577--36304670	18	5.3	18	81	5	104	10	17	1	71	1.20
36304641--36304673	15	2.1	16	94	5	59	9	12	0	78	0.95
36306297--36306330	11	3.2	11	91	8	61	29	8	32	29	1.87
36310469--36310527	18	3.2	17	79	11	55	67	1	15	15	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36313241--36313291	21	2.4	22	83	6	61	7	21	1	68	1.25
36339592--36339773	91	2.0	90	95	1	328	33	19	19	27	1.96
36341858--36341891	11	3.2	11	83	8	52	29	11	32	26	1.92
36348351--36348403	23	2.4	22	76	20	56	9	18	1	69	1.25
36352598--36352648	13	4.0	12	79	20	59	17	9	7	64	1.46
36353428--36353461	11	3.2	11	83	8	52	29	11	32	26	1.92
36356566--36356611	23	2.0	23	86	0	65	39	23	6	30	1.80
36359661--36359765	50	2.1	50	92	0	174	26	19	31	22	1.98
36359742--36359790	25	2.0	25	100	0	98	34	20	28	16	1.94
36359692--36359840	75	2.0	75	94	0	262	29	20	30	19	1.97
36359767--36360115	50	7.0	50	85	1	434	27	20	30	20	1.98
36359767--36360115	99	3.5	100	85	1	443	27	20	30	20	1.98
36359784--36360116	149	2.2	148	82	3	400	27	20	30	21	1.98
36361607--36361657	23	2.2	23	89	0	75	43	21	7	27	1.80
36368183--36368250	29	2.3	29	82	5	84	27	29	13	29	1.94
36368072--36368399	174	1.9	174	97	0	620	31	24	14	30	1.94
36368352--36368430	29	2.7	30	82	13	110	30	30	13	25	1.94
36374693--36374737	24	1.9	23	95	0	72	48	24	2	24	1.62
36374683--36374739	24	2.5	21	76	17	60	45	26	3	24	1.69
36375648--36375751	42	2.5	42	93	0	172	28	25	16	29	1.97
36377174--36377435	39	6.7	40	88	7	337	24	27	22	25	2.00
36383379--36383404	5	5.2	5	100	0	52	61	0	0	38	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36387644--36387688	23	2.0	23	90	0	72	28	11	20	40	1.86
36392453--36392503	18	2.5	20	78	18	61	21	39	3	35	1.72
36394159--36394525	184	2.0	184	98	0	707	33	7	21	37	1.81
36395680--36395866	41	4.6	41	93	1	295	28	20	30	19	1.97
36402973--36403116	41	3.5	41	91	0	207	29	21	28	20	1.98
36402986--36403096	41	2.7	41	98	0	213	27	21	32	18	1.97
36425361--36425548	50	3.6	50	78	9	155	23	28	20	27	1.99
36433812--36433869	30	2.0	29	82	3	71	39	3	25	31	1.73
36434209--36434345	50	2.7	50	77	4	141	29	21	27	22	1.99
36436562--36436810	50	4.9	50	78	8	202	27	19	28	25	1.99
36441431--36441493	27	2.3	27	100	0	126	49	0	14	36	1.44
36447692--36447747	25	2.2	25	96	0	103	32	19	23	25	1.98
36448500--36448659	80	2.0	80	97	0	302	44	18	15	21	1.87
36449914--36449947	16	2.1	17	88	5	52	38	0	20	41	1.53
36455408--36455443	19	1.9	19	94	5	65	27	5	22	44	1.75
36455982--36456046	27	2.4	27	77	7	71	36	21	21	20	1.95
36456125--36456186	26	2.4	27	76	13	67	48	17	11	22	1.79
36456216--36456347	26	5.1	26	81	3	140	27	18	18	35	1.94
36471991--36472056	20	3.2	20	61	4	51	36	10	33	19	1.86
36471971--36472114	41	3.5	41	86	0	200	31	14	30	22	1.94
36476025--36476069	23	2.0	23	100	0	90	53	8	4	33	1.52
36484930--36485065	50	2.8	48	86	8	211	36	7	26	30	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36484929--36485086	50	3.2	50	81	13	200	32	7	28	31	1.85
36485211--36485296	37	2.3	37	93	0	145	23	19	31	25	1.98
36487841--36487879	20	2.0	20	85	5	53	20	10	12	56	1.65
36490037--36490086	25	2.0	25	84	7	66	56	0	2	42	1.11
36493220--36493246	14	1.9	14	100	0	54	88	3	7	0	0.61
36494324--36494585	39	6.7	40	87	7	337	25	22	27	24	2.00
36496581--36496684	42	2.5	42	93	0	172	29	16	25	28	1.97
36496581--36496706	42	3.0	42	88	5	159	30	15	24	29	1.96
36497593--36497649	24	2.5	21	76	17	60	24	3	26	45	1.69
36503903--36503980	29	2.7	28	84	11	104	25	14	30	29	1.94
36503933--36504260	174	1.9	174	96	0	602	30	14	24	31	1.94
36511404--36511809	84	4.8	84	96	0	749	21	16	26	35	1.94
36517834--36517892	30	2.0	30	83	6	75	42	13	8	35	1.75
36528675--36529110	223	2.0	223	87	0	640	33	17	22	27	1.96
36529570--36529695	26	4.8	26	85	1	155	34	25	19	21	1.96
36536219--36536359	50	2.8	50	81	3	167	28	24	19	26	1.99
36552118--36552300	79	2.3	81	83	7	223	24	27	22	24	2.00
36552097--36552300	40	5.1	40	81	8	229	24	27	22	25	2.00
36554190--36554257	23	3.0	23	86	0	91	14	11	30	42	1.82
36554424--36554485	30	2.1	30	81	3	72	17	12	33	35	1.88
36554912--36554981	4	17.5	4	73	16	56	22	0	27	50	1.50
36554948--36554987	20	2.0	21	95	5	73	30	0	22	47	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36558253--36558319	30	2.2	30	83	0	80	37	10	19	32	1.86
36559272--36559316	21	2.1	21	84	8	56	66	6	4	22	1.33
36559506--36559624	65	1.9	62	87	6	177	67	4	14	14	1.38
36559560--36559617	27	2.1	28	83	3	73	68	5	12	13	1.35
36560836--36560893	23	2.5	23	97	0	107	3	3	37	55	1.34
36561256--36561518	44	5.8	44	78	8	260	29	20	16	33	1.95
36561268--36561547	132	2.1	137	78	8	295	31	20	16	31	1.95
36565371--36565402	12	2.6	13	85	14	50	56	6	0	37	1.25
36569286--36569342	20	3.0	20	75	14	66	73	3	3	19	1.12
36580441--36580482	18	2.3	18	91	0	66	42	7	28	21	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141