genome.fa.s6.2.7.7.80.10.50.1000.115.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  42799318

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  115  of  141  ( 16820 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33696681--33696724	18	2.4	18	79	20	56	61	4	0	34	1.16
33697359--33697557	100	2.0	100	96	0	371	26	12	12	48	1.76
33697449--33697493	23	2.0	22	84	16	58	28	4	13	53	1.59
33701537--33702473	3	312.3	3	99	0	1829	66	0	0	32	0.96
33702846--33702889	23	1.9	23	85	0	61	29	4	4	61	1.36
33705980--33706040	27	2.2	28	80	14	72	54	9	4	31	1.55
33706240--33706275	3	12.0	3	100	0	72	66	0	0	33	0.92
33707680--33707823	56	2.5	57	80	1	137	35	18	20	25	1.95
33707821--33707895	28	2.7	29	77	8	84	26	16	25	32	1.96
33717697--33717763	33	2.0	33	91	0	107	31	14	32	20	1.93
33726303--33726367	19	3.2	19	76	19	76	76	0	4	18	0.95
33726312--33726389	24	3.2	24	80	15	97	74	0	5	20	1.01
33726342--33726375	14	2.2	16	85	15	54	73	0	5	20	1.04
33735719--33735773	27	2.0	28	82	3	67	36	21	27	14	1.93
33742036--33742473	220	2.0	221	98	0	842	36	11	21	31	1.88
33748529--33748624	24	4.0	24	88	0	129	22	16	26	34	1.95
33748821--33748931	53	2.1	53	94	0	195	23	18	13	45	1.84
33750776--33750817	21	2.0	21	95	0	75	54	0	7	38	1.28
33751623--33751647	13	1.9	13	100	0	50	52	48	0	0	1.00
33754241--33754276	15	2.4	15	100	0	72	75	0	13	11	1.06
33761018--33761042	6	4.2	6	100	0	50	52	0	32	16	1.44
33762085--33762152	34	2.0	34	100	0	136	35	20	11	32	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33765698--33765831	23	5.8	23	82	0	169	44	24	16	14	1.84
33765696--33765833	69	2.0	70	89	1	215	44	24	15	15	1.85
33773447--33773485	6	6.3	6	82	5	51	61	0	23	15	1.33
33777290--33777433	27	5.4	26	85	2	180	26	24	11	37	1.90
33777290--33777438	53	2.8	52	84	4	192	26	23	11	38	1.88
33785091--33785118	4	7.0	4	100	0	56	75	0	0	25	0.81
33785152--33785191	21	2.0	20	85	14	55	42	2	0	55	1.13
33787639--33787682	21	2.1	21	91	0	70	47	9	9	34	1.67
33794877--33794971	35	2.8	35	80	3	95	34	32	9	23	1.87
33795974--33796015	15	2.7	15	85	3	57	50	0	0	50	1.00
33805068--33805303	50	4.7	50	78	2	226	22	26	23	28	1.99
33823718--33824096	40	9.5	40	84	2	456	14	28	17	39	1.89
33823854--33824076	20	11.1	20	69	7	130	14	30	17	37	1.90
33823718--33824088	120	3.1	119	88	1	508	14	27	17	39	1.89
33840824--33840870	19	2.4	19	86	10	60	65	0	8	25	1.20
33842423--33842464	19	2.2	19	91	0	66	42	19	11	26	1.85
33847040--33847076	19	1.9	19	94	0	65	37	13	16	32	1.87
33848252--33848288	15	2.3	17	86	9	51	48	10	2	37	1.52
33853220--33853493	146	1.9	147	94	0	487	25	18	18	37	1.94
33860395--33860451	19	3.0	19	82	10	64	57	0	0	42	0.98
33864955--33865015	32	1.9	32	83	12	81	45	3	1	49	1.28
33870098--33870263	5	33.2	5	88	2	118	33	20	10	35	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33870490--33870536	7	6.7	7	84	15	62	42	17	0	40	1.49
33870594--33870624	14	2.2	14	94	0	53	45	9	0	45	1.36
33870767--33870985	49	4.5	49	83	1	224	32	30	19	17	1.95
33871528--33871587	31	1.9	31	86	0	84	73	5	16	5	1.19
33872170--33872223	28	2.0	27	85	7	74	48	3	0	48	1.19
33874046--33874111	30	2.2	30	83	2	80	25	9	18	46	1.78
33876552--33876607	18	3.1	18	76	0	67	42	25	7	25	1.80
33876552--33876639	36	2.4	36	88	0	122	43	21	6	28	1.78
33877568--33877604	6	6.5	6	87	6	51	13	0	2	83	0.74
33877568--33877607	16	2.5	17	88	8	57	12	0	2	85	0.71
33877572--33877612	22	1.9	21	90	5	64	9	2	2	85	0.78
33880578--33880631	23	2.4	22	77	20	58	37	5	0	57	1.22
33880582--33880648	32	2.1	31	83	8	82	38	5	0	55	1.25
33881154--33881218	25	2.6	25	75	2	67	46	3	6	44	1.44
33881804--33881848	23	1.9	24	86	13	67	48	4	0	46	1.22
33884297--33884584	125	2.3	125	94	0	495	30	18	20	29	1.97
33887877--33887988	22	5.4	21	68	20	83	46	2	27	23	1.66
33887877--33887922	11	4.3	11	91	2	67	50	4	28	17	1.65
33887864--33887984	62	2.0	61	88	1	179	45	2	28	23	1.66
33889537--33889580	17	2.7	16	79	13	54	29	2	9	59	1.41
33891403--33891599	66	3.0	66	93	0	322	27	17	30	24	1.97
33893518--33893772	87	2.9	87	87	1	377	35	23	15	25	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33898685--33898780	41	2.3	40	82	7	113	35	20	15	28	1.93
33898701--33898781	41	2.0	41	87	0	117	35	19	14	29	1.92
33898685--33898793	41	2.7	41	79	2	112	36	19	14	29	1.91
33903122--33903153	12	2.7	12	100	0	64	31	18	18	31	1.95
33904340--33904386	21	2.2	22	85	14	71	63	0	0	36	0.94
33905204--33905247	20	2.2	20	91	0	70	38	9	25	27	1.86
33906833--33906870	18	2.2	17	86	9	51	68	2	13	15	1.32
33908331--33908835	175	2.9	173	87	1	713	22	26	24	26	2.00
33908340--33908832	44	11.2	44	68	7	268	23	26	24	25	2.00
33908347--33908835	88	5.6	87	80	4	527	22	26	24	26	2.00
33910095--33910147	20	2.5	21	81	6	63	7	20	1	69	1.22
33910102--33910131	13	2.3	13	94	0	51	10	20	0	70	1.16
33911057--33911124	35	1.9	35	85	5	93	4	10	8	76	1.14
33913626--33913690	34	1.9	34	96	0	121	13	29	12	44	1.81
33916041--33916164	61	2.0	61	96	0	230	54	8	8	28	1.59
33916245--33916280	16	2.3	15	90	4	54	61	2	8	27	1.39
33916245--33916299	28	2.0	26	82	6	65	61	3	5	29	1.35
33916752--33916790	11	3.6	11	86	3	53	82	7	2	7	0.94
33930255--33930360	32	3.3	32	84	6	142	34	8	11	45	1.71
33931286--33931319	17	1.9	17	88	5	50	61	11	8	17	1.54
33931271--33931319	18	2.8	17	78	6	53	61	12	8	18	1.55
33939114--33939163	8	6.4	8	75	11	50	54	28	2	16	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33939116--33939147	15	2.2	14	94	5	55	53	31	0	15	1.43
33940721--33940777	3	21.0	3	73	20	54	70	3	0	26	1.03
33947624--33947653	10	3.1	10	90	9	53	10	0	16	73	1.09
33948050--33948252	45	4.6	44	76	7	187	24	23	23	28	1.99
33948050--33948252	89	2.3	89	86	1	273	24	23	23	28	1.99
33948086--33948341	45	5.8	45	76	3	227	25	23	20	30	1.98
33948427--33948992	50	11.3	50	78	3	393	24	19	23	32	1.98
33948412--33949024	100	6.1	100	82	4	615	24	19	22	32	1.97
33948477--33949024	150	3.6	149	84	3	650	24	19	22	33	1.97
33953110--33953166	24	2.4	24	82	8	64	43	5	22	28	1.75
33956560--33956626	21	3.2	21	71	12	66	38	0	0	61	0.96
33963892--33963930	21	1.9	20	84	5	51	38	0	5	56	1.22
33965671--33965727	29	2.0	28	93	3	96	52	5	21	21	1.66
33971489--33972164	234	2.9	234	94	0	1149	25	15	17	42	1.88
33976317--33976351	6	5.8	6	96	0	61	62	20	0	17	1.32
33989483--33989546	33	2.0	33	93	3	112	9	25	12	53	1.68
33994565--33994725	33	4.8	32	74	9	126	27	26	14	31	1.95
33994553--33994792	101	2.4	101	93	0	399	27	25	15	32	1.95
33998851--33998884	16	2.1	16	89	10	52	76	8	8	5	1.15
33999433--33999469	14	2.8	13	92	8	65	45	5	10	37	1.62
33999450--33999506	22	2.7	20	79	12	60	45	5	8	40	1.58
33999467--33999510	22	2.0	22	95	0	79	50	4	6	38	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33999509--33999551	22	2.0	22	86	9	61	37	6	20	34	1.80
33999748--33999825	34	2.3	34	86	6	113	19	24	15	41	1.90
34002634--34002679	21	2.1	23	84	15	62	13	8	8	69	1.36
34011014--34011054	21	1.9	22	85	5	57	46	9	12	31	1.74
34011013--34011060	21	2.2	22	77	3	53	54	8	10	27	1.63
34011086--34011130	21	2.1	23	88	12	69	68	8	8	13	1.38
34018341--34018744	218	1.9	218	92	1	684	28	25	19	26	1.99
34018459--34018746	44	6.6	44	71	11	162	29	25	18	26	1.98
34018732--34019139	128	3.2	129	90	1	649	25	22	20	32	1.98
34021254--34021346	39	2.4	38	84	10	116	11	5	7	75	1.18

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141