genome.fa.s6.2.7.7.80.10.50.1000.13.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  42799318

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  13  of  141  ( 16820 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3831532--3831629	49	2.0	49	95	0	178	32	24	26	16	1.96
3834767--3834905	70	2.0	70	97	0	260	23	28	17	30	1.97
3835149--3835258	57	1.9	57	96	0	202	16	26	20	36	1.94
3835546--3835609	22	3.0	22	88	2	94	31	4	31	32	1.78
3835871--3835928	22	2.6	22	91	0	89	29	5	34	31	1.79
3836073--3836531	230	2.0	230	96	0	855	36	19	18	25	1.95
3836586--3837014	215	2.0	215	96	0	795	34	16	24	24	1.95
3837086--3837214	67	1.9	67	100	0	258	30	20	20	28	1.98
3837384--3837702	160	2.0	160	98	0	611	47	14	7	31	1.71
3837733--3837791	30	2.0	30	83	6	75	28	15	25	30	1.96
3840751--3840780	15	2.1	14	93	6	51	6	20	0	73	1.05
3840799--3840843	19	2.3	20	88	3	65	6	13	2	77	1.05
3844332--3844429	27	3.5	28	88	5	128	32	28	13	25	1.93
3846553--3846594	22	2.0	22	85	4	59	11	9	2	76	1.12
3846559--3846611	19	2.8	19	83	8	56	9	7	3	79	1.05
3855076--3855139	22	3.0	22	88	2	94	31	4	31	32	1.78
3855410--3855490	41	2.0	41	97	0	153	39	16	11	33	1.83
3857859--3858261	202	2.0	202	97	0	763	33	19	15	32	1.93
3872262--3872310	20	2.5	20	83	6	64	40	22	28	8	1.82
3893733--3893865	50	2.7	49	84	4	169	21	28	23	27	1.99
3898174--3898273	44	2.3	44	91	5	159	30	30	20	20	1.97
3899602--3899639	15	2.4	17	86	8	53	68	2	0	28	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3903716--3903756	15	2.8	15	89	10	59	39	34	0	26	1.57
3904080--3904165	15	5.8	15	73	12	52	36	41	1	20	1.60
3904081--3904131	23	2.2	24	89	3	77	33	47	1	17	1.59
3904120--3904160	21	2.0	20	90	4	64	39	39	0	21	1.54
3904147--3904195	14	3.4	15	83	5	57	44	32	0	22	1.53
3904466--3904578	41	2.8	41	94	0	190	32	26	20	20	1.97
3904617--3904746	40	3.3	39	72	11	113	19	20	24	36	1.95
3904678--3904754	40	1.9	40	84	5	102	19	20	23	36	1.95
3910521--3910680	86	1.9	85	85	8	227	24	19	26	30	1.98
3910524--3910680	43	3.7	43	79	10	187	24	19	26	29	1.98
3912224--3912350	43	3.0	42	75	14	143	32	24	19	23	1.98
3912224--3912339	41	2.8	41	80	11	137	31	25	20	21	1.98
3912362--3912547	51	3.7	49	76	9	178	31	27	17	23	1.97
3912360--3912544	101	1.8	102	88	3	284	31	27	17	23	1.97
3916493--3916674	72	2.5	72	100	0	364	41	13	8	36	1.75
3918681--3918705	13	1.9	13	100	0	50	8	20	0	72	1.10
3921723--3921776	26	2.1	26	100	0	108	14	11	22	51	1.73
3922653--3922695	23	1.9	22	90	4	68	37	2	2	58	1.24
3929931--3929967	17	2.3	17	86	9	51	51	13	2	32	1.55
3930461--3930495	18	2.0	18	94	5	63	28	0	0	71	0.86
3930461--3930535	10	7.7	10	76	19	61	36	4	0	60	1.16
3930525--3930563	18	2.3	18	86	8	55	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3936179--3936246	26	2.7	26	88	2	102	32	20	11	35	1.89
3936472--3936509	9	4.1	10	80	19	55	18	18	0	63	1.32
3938417--3938544	43	3.0	43	85	5	177	48	3	23	25	1.65
3951500--3951682	92	2.0	92	96	2	341	31	14	20	33	1.93
3953191--3953322	66	2.0	66	98	0	255	51	13	9	25	1.71
3954616--3954660	21	2.1	21	84	8	56	26	4	22	46	1.70
3964825--3965021	48	4.1	47	82	3	207	22	29	21	26	1.99
3964827--3965002	96	1.8	96	87	2	264	21	30	22	26	1.98
3970561--3970886	81	4.0	81	99	0	643	36	24	18	21	1.95
3977993--3978030	14	2.7	14	76	15	51	71	7	5	15	1.28
3981526--3981570	14	3.3	14	78	6	56	35	0	15	48	1.45
3982544--3982603	29	2.1	29	93	0	102	41	30	0	28	1.56
3982550--3982597	15	3.3	15	73	5	53	43	27	0	29	1.55
3983454--3983539	43	2.0	43	95	0	154	32	22	12	32	1.91
3985777--3985813	18	2.0	19	89	5	58	78	5	2	13	1.03
3990428--3990471	21	2.0	22	86	4	63	25	6	34	34	1.82
3998022--3998199	27	6.6	27	79	3	160	28	29	16	25	1.97
3998043--3998198	82	1.9	81	82	3	197	27	29	17	25	1.97
4003957--4003990	14	2.4	14	95	0	59	2	17	0	79	0.86
4005347--4005490	46	3.1	44	69	21	107	30	27	19	22	1.98
4021595--4021662	31	2.2	31	97	2	129	29	26	13	30	1.94
4021867--4021944	25	3.2	25	83	3	88	26	19	21	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4021874--4021943	25	2.8	25	86	2	97	25	21	24	28	1.99
4028101--4028142	20	2.2	20	87	8	61	28	7	7	57	1.52
4040971--4041146	56	3.1	56	85	0	244	34	23	13	28	1.93
4050054--4050182	46	2.7	47	82	7	147	30	20	27	22	1.98
4051236--4051275	21	2.0	21	90	5	64	12	35	27	25	1.92
4052727--4052826	50	2.0	50	100	0	200	30	10	18	42	1.82
4056109--4056223	44	2.6	44	73	1	115	26	16	26	30	1.97
4056661--4056820	26	6.2	26	94	0	266	31	7	25	36	1.84
4065190--4065371	64	2.9	63	74	11	165	23	30	17	29	1.97
4073610--4073742	51	2.6	52	82	7	173	27	14	29	28	1.95
4074740--4074971	56	4.1	56	98	0	446	45	9	21	22	1.81
4091590--4091652	27	2.3	27	94	0	108	49	14	19	17	1.80
4091866--4092044	86	2.1	88	81	10	210	26	21	26	25	2.00
4094205--4094234	15	2.0	15	100	0	60	20	20	20	40	1.92
4104870--4104954	7	12.4	7	78	10	61	47	30	1	21	1.58
4104874--4104934	14	4.5	14	85	8	81	45	29	0	24	1.53
4104961--4105024	7	9.1	7	91	0	65	25	9	32	32	1.88
4109324--4109453	63	2.1	63	91	0	206	36	14	15	33	1.88
4112657--4112810	42	3.6	42	79	6	168	30	16	24	28	1.97
4127194--4127378	79	2.3	81	84	7	236	24	22	27	25	2.00
4127195--4127378	40	4.6	40	83	9	216	24	22	27	25	2.00
4127247--4127411	79	2.1	79	84	6	210	26	21	27	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4131693--4131809	59	2.0	59	98	0	225	40	17	21	21	1.92
4131951--4132293	179	1.9	179	100	0	686	30	26	13	29	1.95
4144948--4145051	42	2.5	42	87	3	147	32	15	23	28	1.95
4145984--4146028	21	2.1	21	100	0	90	51	13	13	22	1.75
4146552--4146722	93	1.8	93	85	5	238	21	19	29	29	1.98
4149668--4149747	15	5.4	15	76	7	74	11	17	12	58	1.62
4152127--4152299	46	3.7	46	77	10	190	21	19	28	31	1.97
4152124--4152294	93	1.8	93	89	0	270	21	19	29	30	1.97
4166202--4166352	6	24.3	6	71	18	105	49	15	16	19	1.80
4166216--4166352	31	4.6	31	84	11	151	48	15	16	18	1.81
4166222--4166352	56	2.3	56	89	1	199	48	15	16	19	1.81
4166253--4166323	25	2.8	25	93	0	115	47	15	16	19	1.82
4166211--4166341	25	5.0	25	77	17	110	48	15	17	19	1.82
4166489--4166562	27	2.8	27	89	2	105	36	21	24	17	1.95
4166721--4166785	22	3.0	22	75	8	69	33	21	23	21	1.97
4167048--4167087	16	2.5	16	100	0	80	30	12	25	32	1.92
4167251--4167744	27	18.3	28	89	2	648	24	20	20	34	1.97
4167245--4167744	54	9.3	54	91	1	745	24	20	21	34	1.97
4167675--4168123	27	16.7	26	78	6	342	30	9	20	38	1.85
4167252--4167744	81	6.1	81	95	0	844	24	20	20	34	1.97
4167784--4168123	81	4.2	80	84	3	403	31	8	20	40	1.82
4167837--4168123	27	10.6	27	87	0	367	32	7	19	40	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4167836--4168123	81	3.6	81	86	0	405	32	7	19	40	1.80
4170071--4170198	6	20.8	6	70	16	84	47	17	16	18	1.83
4170080--4170221	31	4.5	31	89	0	194	50	14	16	19	1.79
4170358--4170431	27	2.8	27	83	2	87	35	20	24	20	1.96
4170590--4170654	22	3.0	22	80	8	78	33	23	23	20	1.97
4171082--4171572	27	18.2	27	85	6	508	25	20	19	34	1.96
4171109--4171572	54	8.6	54	87	3	612	25	20	19	34	1.96
4171109--4171572	81	5.7	81	86	2	635	25	20	19	34	1.96
4171593--4171949	27	13.3	26	81	5	338	31	8	19	39	1.83
4172148--4172186	20	2.0	20	94	0	69	12	41	17	28	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141