genome.fa.s6.2.7.7.80.10.50.1000.118.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  42799318

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  118  of  141  ( 16820 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34896616--34896740	50	2.4	53	81	10	141	25	30	20	24	1.98
34901320--34901464	48	3.0	48	98	0	281	25	17	10	46	1.80
34912876--34912933	30	1.9	30	89	0	89	41	8	22	27	1.83
34913323--34913428	50	2.1	50	83	0	131	23	26	32	17	1.97
34923022--34923160	50	2.8	50	83	2	181	20	29	23	26	1.99
34926655--34926727	15	4.7	15	77	5	65	27	16	10	45	1.81
34926701--34926732	15	2.1	15	94	0	55	34	18	6	40	1.76
34929551--34929735	40	4.7	40	81	5	178	27	28	20	24	1.99
34929518--34929735	40	5.5	39	77	7	165	25	27	20	25	1.99
34939773--34939812	20	2.0	21	90	5	64	40	17	12	30	1.86
34939885--34939975	24	3.8	24	77	8	96	24	24	21	29	1.99
34941347--34941422	23	3.3	23	84	0	116	21	19	27	31	1.97
34942682--34942797	42	2.8	42	78	2	126	37	18	11	31	1.87
34943938--34943979	13	3.2	13	93	0	75	61	4	7	26	1.42
34943919--34943961	22	2.0	22	90	4	70	55	4	9	30	1.52
34944028--34944057	13	2.3	13	94	0	51	60	3	6	30	1.39
34944261--34944293	10	3.3	10	95	0	57	42	6	0	51	1.26
34955238--34955418	52	3.5	52	71	6	152	34	26	16	22	1.95
34955226--34955419	105	1.9	103	83	7	257	34	27	16	22	1.95
34965307--34965347	21	2.0	20	85	4	55	34	7	12	46	1.69
34966126--34966167	17	2.6	16	88	7	66	26	0	21	52	1.47
34967398--34967578	46	3.9	46	91	0	299	35	9	25	28	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34974096--34974276	49	3.7	49	90	1	281	32	22	17	28	1.96
34977837--34977885	21	2.3	21	77	19	57	24	32	24	18	1.97
34979944--34980037	28	3.3	28	90	1	143	25	15	26	31	1.96
34980981--34981032	26	2.0	26	92	0	86	53	13	11	21	1.70
34980999--34981032	16	2.1	17	88	5	52	52	14	11	20	1.73
34986896--34988094	600	2.0	593	84	3	1582	29	14	25	30	1.95
34995773--34995832	22	2.7	22	97	2	111	30	31	10	28	1.89
35000198--35000232	18	1.9	18	94	0	61	45	11	14	28	1.79
35001337--35001393	27	2.1	27	100	0	114	36	21	24	17	1.94
35006083--35006167	39	2.2	39	82	0	98	43	20	5	30	1.75
35008935--35008997	21	3.0	21	85	2	81	33	34	3	28	1.73
35010255--35010310	30	1.9	28	82	13	69	60	10	14	14	1.58
35012528--35012566	18	2.2	17	82	13	51	5	17	0	76	0.96
35015116--35015184	38	1.9	34	82	11	84	17	21	0	60	1.35
35017578--35017873	148	2.0	148	97	0	565	24	13	17	44	1.84
35026339--35026384	24	1.9	24	81	0	56	28	15	21	34	1.94
35034485--35034515	16	1.9	16	93	0	53	9	9	9	70	1.33
35037183--35037207	13	1.9	13	100	0	50	16	40	24	20	1.91
35037744--35037809	24	2.7	25	75	11	64	31	18	6	43	1.74
35043120--35043181	29	2.2	28	82	2	70	24	14	16	45	1.84
35043360--35043824	126	3.7	126	95	0	788	30	14	20	34	1.93
35046905--35046929	10	2.5	10	100	0	50	48	0	8	44	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35046912--35047055	56	2.5	57	74	12	143	45	7	9	37	1.66
35047025--35047081	26	2.2	26	100	0	114	59	7	7	26	1.49
35047079--35048967	29	66.7	29	86	5	2410	24	0	24	50	1.53
35047079--35048967	57	33.3	57	88	4	2521	24	0	24	50	1.53
35047079--35048930	9	195.1	10	61	31	134	24	0	23	50	1.53
35049038--35049086	25	1.9	25	87	4	71	38	16	4	40	1.67
35049195--35049255	24	2.8	21	74	13	59	1	19	34	44	1.61
35049200--35049252	24	2.2	24	93	0	88	1	22	32	43	1.64
35049507--35049552	18	2.6	18	82	0	56	39	8	30	21	1.84
35050197--35050228	7	4.6	7	100	0	64	59	12	0	28	1.34
35051305--35051365	29	2.1	30	90	9	99	67	0	0	32	0.91
35051359--35051434	40	1.9	40	94	0	134	42	0	25	32	1.55
35052658--35052707	26	1.9	26	88	8	75	22	20	42	16	1.89
35053585--35053629	17	2.6	17	82	0	54	22	33	22	22	1.97
35055315--35055432	25	4.8	25	78	6	132	32	20	20	27	1.97
35063035--35063249	25	8.6	25	77	6	175	26	21	22	29	1.99
35063035--35063249	50	4.3	50	76	4	200	26	21	22	29	1.99
35063039--35063249	75	2.8	75	84	1	271	26	22	22	29	1.99
35072919--35072999	31	2.6	31	77	12	87	43	16	8	32	1.78
35081552--35081798	50	4.8	50	81	4	246	27	23	27	21	1.99
35086728--35087120	199	2.0	199	93	0	678	26	15	25	33	1.95
35087852--35087886	18	1.9	19	88	11	56	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35093848--35094025	27	6.6	27	84	3	205	29	28	15	26	1.96
35093869--35094024	82	1.9	81	88	3	233	29	28	15	26	1.96
35101911--35102088	27	6.6	27	84	3	205	29	28	15	26	1.96
35101932--35102087	82	1.9	81	88	3	233	29	28	15	26	1.96
35114017--35114316	38	7.9	37	72	5	188	32	23	22	22	1.98
35114017--35114316	76	3.9	76	76	5	248	32	23	22	22	1.98
35114017--35114318	114	2.6	114	76	5	279	32	22	22	22	1.98
35117439--35117478	7	5.4	7	91	8	62	82	5	12	0	0.82
35117438--35117483	8	5.9	8	82	7	51	82	4	13	0	0.81
35117567--35117600	17	2.0	17	88	11	52	76	14	0	8	1.01
35121805--35121841	19	1.9	19	94	0	65	27	10	2	59	1.44
35134952--35134990	18	2.2	18	86	4	53	46	20	12	20	1.83
35134969--35135424	27	16.9	27	82	1	466	42	20	17	19	1.89
35140910--35140950	16	2.6	16	85	11	50	29	36	0	34	1.58
35143108--35143157	21	2.4	21	72	0	55	78	2	8	12	1.05
35148563--35148928	33	10.8	33	71	23	205	20	20	27	31	1.98
35148558--35148891	102	3.3	102	96	1	589	20	20	28	30	1.97
35151816--35151862	24	2.0	24	83	8	60	48	0	34	17	1.47
35159082--35159280	50	3.9	50	76	6	166	28	20	27	23	1.99
35159529--35159567	12	3.2	12	85	0	51	51	5	23	20	1.67
35166585--35166634	20	2.4	21	74	16	50	16	4	22	58	1.55
35169326--35169510	79	2.3	81	84	7	236	24	22	27	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35169327--35169510	40	4.6	40	83	9	216	24	22	27	25	2.00
35169379--35169543	79	2.1	79	84	6	210	26	21	27	25	1.99
35171631--35171798	41	4.1	40	84	5	194	18	29	17	35	1.94
35171657--35171760	20	5.0	22	67	21	80	17	30	17	34	1.93
35171667--35171772	21	5.1	21	68	13	76	17	33	16	32	1.93
35174688--35174865	27	6.6	26	82	6	178	26	15	28	29	1.96
35174689--35174844	82	1.9	81	86	3	224	26	16	28	28	1.97
35174685--35174865	82	2.2	81	82	2	220	27	16	27	29	1.97
35174770--35174876	27	3.9	27	85	1	70	26	14	28	30	1.95
35182879--35183056	27	6.6	27	83	3	205	26	15	28	29	1.96
35182880--35183035	82	1.9	81	88	3	233	26	15	28	29	1.96
35182876--35183056	82	2.2	81	83	2	229	27	15	27	29	1.96
35189594--35189739	49	2.9	50	83	7	172	23	21	19	36	1.95
35189594--35189726	51	2.7	50	84	9	155	23	21	20	35	1.96
35190262--35190311	21	2.4	22	80	16	61	38	20	8	34	1.82
35199902--35199991	45	2.0	45	100	0	180	26	26	11	35	1.90
35210272--35210311	20	1.9	22	90	10	66	22	30	10	37	1.87
35212215--35213619	39	35.7	39	79	5	650	35	15	29	19	1.93
35212215--35212850	79	8.1	79	80	3	640	34	15	30	19	1.93
35212212--35213639	20	72.4	20	63	13	305	35	15	29	19	1.93
35212826--35212904	19	4.1	19	70	15	72	36	16	29	17	1.92
35212845--35213179	40	8.5	40	87	3	430	34	16	30	19	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35212856--35213185	119	2.8	118	86	4	450	34	15	30	19	1.93
35212521--35213520	335	3.0	334	88	1	1452	35	15	29	19	1.93
35213078--35213282	98	2.1	97	85	3	268	36	15	29	19	1.92
35212247--35213619	79	17.4	78	77	8	538	35	15	29	19	1.93
35213555--35213675	60	2.0	59	87	1	170	33	14	29	23	1.93
35213615--35213696	40	2.1	39	90	2	128	32	12	32	21	1.91
35215268--35215597	40	8.3	40	94	1	493	24	20	28	26	1.99
35215215--35215597	80	4.8	80	89	2	495	24	20	27	26	1.99
35215215--35215597	120	3.2	120	87	2	495	24	20	27	26	1.99
35223285--35223467	40	4.6	40	83	6	131	25	20	27	26	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141