genome.fa.s6.2.7.7.80.10.50.1000.44.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  42799318

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  44  of  141  ( 16820 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13260278--13260327	14	3.7	14	70	20	52	44	4	14	38	1.63
13261525--13261569	17	2.7	18	80	13	60	71	4	15	8	1.28
13261516--13261564	9	6.0	8	77	13	55	71	2	14	12	1.23
13268538--13268599	26	2.4	26	78	10	72	29	11	14	45	1.80
13274864--13274925	24	2.6	24	80	7	65	45	0	0	54	0.99
13274902--13274948	19	2.5	20	80	16	55	34	0	4	61	1.15
13275397--13275503	51	2.1	51	98	0	205	39	17	5	37	1.74
13276037--13276122	44	2.0	44	92	0	145	30	17	11	40	1.85
13276810--13276853	3	14.7	3	100	0	88	68	0	0	31	0.90
13279663--13279692	11	2.6	11	94	5	51	26	0	0	73	0.84
13279715--13279766	22	2.5	22	84	12	65	36	0	1	61	1.07
13279654--13279771	9	12.1	10	71	23	51	33	0	4	62	1.14
13292130--13292183	25	2.3	25	75	18	62	53	7	3	35	1.47
13319487--13319657	86	2.0	86	87	0	243	27	14	23	35	1.93
13322335--13322389	23	2.4	23	87	3	76	27	16	16	40	1.89
13323121--13323159	17	2.3	17	100	0	78	41	15	15	28	1.87
13331687--13331755	29	2.4	28	77	15	70	69	14	7	8	1.35
13335388--13335460	35	2.1	35	94	5	130	54	5	26	13	1.60
13338970--13339016	21	2.3	21	88	3	78	21	12	4	61	1.48
13338970--13339023	21	2.6	21	85	8	67	18	14	5	61	1.52
13340171--13340199	14	2.1	14	100	0	58	41	0	0	58	0.98
13341154--13341209	29	1.9	29	88	0	85	37	17	5	39	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13342851--13342920	17	4.2	17	71	25	51	22	27	0	50	1.50
13352339--13352402	9	6.9	9	75	12	58	70	3	1	25	1.11
13353954--13354002	26	2.0	24	84	8	62	36	0	2	61	1.08
13373523--13373987	46	10.1	46	94	1	738	31	20	15	32	1.94
13377835--13378005	49	3.5	48	84	7	213	32	24	13	29	1.93
13379285--13379675	46	8.6	46	92	2	605	30	20	15	34	1.93
13379285--13379675	183	2.1	183	90	3	619	30	20	15	34	1.93
13386956--13386989	17	2.1	16	88	5	50	73	17	0	8	1.08
13402564--13402826	51	5.2	51	88	2	377	28	23	15	33	1.95
13414574--13414600	3	9.0	3	100	0	54	0	33	0	66	0.92
13416172--13416205	16	2.2	15	89	5	50	55	0	0	44	0.99
13423729--13423780	18	2.7	20	74	17	56	36	3	0	59	1.16
13424588--13424803	43	5.0	43	81	4	240	31	31	13	23	1.93
13424588--13424774	85	2.2	86	81	4	218	32	32	12	22	1.91
13428396--13428452	27	2.1	27	100	0	114	21	17	3	57	1.54
13428539--13428659	61	2.0	61	98	0	233	34	10	10	43	1.74
13429703--13429980	41	6.8	41	92	2	434	29	27	21	21	1.99
13431907--13431950	22	2.0	21	86	4	61	40	11	6	40	1.68
13434761--13434789	14	2.1	14	100	0	58	37	13	13	34	1.85
13440443--13440489	22	2.1	22	88	0	67	27	31	0	40	1.57
13440443--13440541	52	1.9	52	91	0	162	30	31	0	38	1.58
13440494--13440544	22	2.3	22	90	6	77	31	33	0	35	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13440578--13440643	10	6.5	10	73	3	60	33	1	0	65	1.02
13440578--13440643	31	2.2	30	94	2	114	33	1	0	65	1.02
13445499--13445788	123	2.3	123	93	1	492	30	22	18	27	1.97
13451110--13451162	28	2.0	27	85	7	72	39	20	0	39	1.53
13451119--13451174	28	2.0	28	82	0	67	41	19	0	39	1.52
13455392--13455479	38	2.3	39	76	2	97	35	20	20	23	1.96
13457077--13457145	30	2.3	30	85	9	88	40	24	14	20	1.90
13468682--13468782	26	3.9	26	84	1	114	35	23	18	21	1.96
13476268--13476344	26	3.0	26	76	0	73	37	25	16	19	1.93
13480295--13480338	23	1.9	23	95	0	79	11	11	9	68	1.40
13480847--13480910	25	2.6	24	78	14	67	39	1	1	57	1.17
13480849--13480928	32	2.5	31	78	9	81	37	1	1	60	1.13
13485603--13485706	24	4.2	24	82	3	111	18	28	18	34	1.94
13485603--13485707	49	2.1	50	82	3	133	18	28	19	34	1.95
13485603--13485722	25	4.8	26	78	9	99	18	28	20	33	1.96
13489249--13489286	12	3.2	12	96	0	67	7	31	39	21	1.82
13493271--13493299	15	2.0	15	93	6	51	37	0	20	41	1.53
13499677--13499724	25	1.9	25	86	0	69	31	14	14	39	1.86
13504330--13504427	23	4.3	23	81	0	106	24	18	23	33	1.97
13504632--13504679	23	2.0	25	84	8	64	39	0	22	37	1.55
13511459--13511485	5	5.4	5	100	0	54	81	0	0	18	0.69
13511851--13511940	28	3.1	27	78	9	90	24	24	8	42	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13511864--13511969	29	3.7	28	79	8	83	22	24	8	44	1.80
13513016--13513040	13	1.9	13	100	0	50	28	0	8	64	1.22
13514505--13514632	64	2.0	64	98	0	247	21	15	22	40	1.91
13520095--13520139	14	3.1	14	80	3	54	77	0	17	4	0.92
13520977--13521012	6	5.7	6	90	9	54	72	0	13	13	1.13
13520974--13521022	7	7.3	7	84	15	68	67	0	16	16	1.24
13520974--13521022	20	2.5	19	90	6	71	67	0	16	16	1.24
13520977--13521013	13	2.8	13	100	0	74	72	0	13	13	1.11
13522195--13523029	88	9.5	87	84	3	867	29	24	23	21	1.99
13522195--13523031	263	3.2	261	83	3	966	29	24	23	21	1.99
13522898--13523032	44	3.0	42	69	16	103	28	25	22	22	1.99
13523314--13523564	100	2.5	100	89	0	385	33	21	17	27	1.96
13523317--13523550	50	4.7	49	67	6	148	34	21	17	26	1.96
13523492--13523644	80	1.9	80	89	0	234	28	25	19	26	1.99
13523394--13523745	181	2.0	180	82	4	440	31	22	19	26	1.97
13523605--13523764	50	3.2	50	65	7	117	36	19	18	26	1.94
13525463--13525491	15	2.0	15	93	6	51	34	0	6	58	1.25
13530213--13530282	21	3.4	21	78	7	74	74	0	4	21	0.99
13530745--13530777	12	2.6	13	85	9	50	9	30	36	24	1.86
13536918--13537016	41	2.4	40	88	3	135	30	20	18	31	1.96
13538623--13538655	15	2.1	16	88	5	50	51	27	0	21	1.48
13539256--13539324	33	2.1	32	86	2	93	42	13	2	42	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13539733--13539842	29	3.8	29	77	9	125	25	18	10	46	1.80
13539733--13539849	58	2.0	58	86	0	162	24	17	10	47	1.78
13541895--13541964	9	8.0	9	76	19	51	62	1	0	35	1.04
13542052--13542116	26	2.4	26	78	19	71	38	1	1	58	1.17
13544719--13544771	19	2.5	22	79	14	67	41	0	0	58	0.98
13546340--13546374	17	1.9	19	88	11	56	48	5	0	45	1.26
13551792--13551824	8	4.0	8	96	4	57	63	0	0	36	0.95
13559231--13559314	44	1.9	44	82	4	107	29	23	17	28	1.97
13559244--13559401	44	3.6	44	75	8	126	25	24	20	29	1.99
13559575--13560101	88	6.0	88	77	5	429	23	24	24	26	2.00
13559662--13560066	133	3.0	133	89	0	614	23	23	24	28	2.00
13559577--13560101	221	2.4	221	84	3	646	23	24	24	26	2.00
13562280--13562337	24	2.3	26	80	14	68	8	6	12	72	1.28
13562267--13562355	30	3.0	30	84	0	115	12	5	10	71	1.28
13562298--13562349	24	2.2	24	86	3	70	11	1	11	75	1.14
13562305--13562365	19	3.0	21	78	19	60	9	0	8	81	0.86
13569211--13569284	21	3.5	21	83	5	78	37	21	20	20	1.94
13569269--13569343	23	3.3	23	92	0	123	38	20	17	24	1.93
13569210--13569343	23	6.0	22	82	4	112	37	20	19	23	1.94
13569908--13569941	16	2.1	16	88	0	50	2	35	0	61	1.11
13570199--13570243	18	2.4	18	85	3	63	40	0	20	40	1.52
13578049--13578079	15	2.0	16	93	6	55	61	0	0	38	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13578120--13578177	15	3.6	15	72	17	53	53	0	1	44	1.10
13578121--13578171	17	3.0	17	76	21	61	56	0	0	43	0.99
13591546--13591592	23	2.0	24	100	0	80	36	0	17	46	1.48
13591548--13591590	13	3.5	13	81	18	65	34	0	16	48	1.46
13591794--13591835	21	2.0	21	100	0	84	4	52	4	38	1.44
13604216--13604259	15	3.0	15	86	3	54	11	6	11	70	1.33
13606147--13606203	23	2.5	23	79	0	69	10	12	8	68	1.40
13606555--13606591	3	12.3	3	94	0	65	64	0	2	32	1.07
13610576--13610643	34	2.0	34	82	5	84	32	20	20	26	1.97
13611736--13611773	20	1.9	20	89	10	60	15	5	31	47	1.68

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141