genome.fa.s6.2.7.7.80.10.50.1000.136.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  42799318

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  136  of  141  ( 16820 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40809949--40809991	20	2.2	20	83	8	52	69	9	2	18	1.26
40810092--40810491	102	3.8	102	90	3	550	56	15	2	26	1.51
40810202--40810462	48	5.2	48	64	15	123	56	15	1	26	1.50
40810457--40810542	42	2.0	43	97	2	165	51	16	2	30	1.57
40810226--40810532	102	3.0	102	81	10	349	56	15	1	26	1.49
40810499--40810725	107	2.1	108	87	3	323	60	12	1	25	1.40
40810541--40810753	107	2.0	107	85	5	286	63	10	0	24	1.32
40813010--40813066	11	5.2	11	83	10	64	21	31	1	45	1.62
40814880--40814922	18	2.4	18	88	0	59	18	27	9	44	1.80
40815346--40815463	49	2.4	49	97	0	218	44	3	6	44	1.47
40818546--40818951	124	3.3	124	89	2	600	31	19	16	31	1.95
40822877--40822989	41	2.8	41	87	0	163	31	24	22	21	1.98
40824088--40824116	14	2.1	14	100	0	58	44	20	0	34	1.52
40828934--40828961	13	2.2	13	100	0	56	35	0	35	28	1.58
40832245--40832284	18	2.2	19	86	4	55	35	0	0	65	0.93
40832231--40832280	16	3.2	16	72	11	50	34	2	0	64	1.05
40832407--40832708	86	3.5	87	83	4	362	33	16	11	39	1.84
40832587--40832905	159	2.0	159	88	1	478	31	12	12	43	1.80
40832927--40833000	35	2.1	35	84	0	94	20	18	16	44	1.87
40832962--40833285	87	3.7	88	91	2	460	30	13	12	43	1.81
40833309--40833380	35	2.1	35	86	5	101	23	20	12	43	1.86
40833058--40833638	292	2.0	293	89	2	900	30	14	12	41	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40833344--40833556	88	2.4	86	89	3	327	29	15	13	42	1.84
40832743--40833626	380	2.3	380	87	3	1243	30	14	12	41	1.83
40833592--40833717	59	2.1	59	82	0	144	28	9	11	50	1.69
40856954--40856988	9	3.8	9	92	3	52	74	8	2	14	1.17
40856954--40856999	19	2.4	19	85	7	58	73	8	4	13	1.21
40864277--40864456	62	2.9	62	80	11	165	30	11	8	49	1.69
40864478--40864518	21	1.9	22	85	5	57	43	17	2	36	1.62
40874409--40874433	11	2.3	11	100	0	50	16	0	16	68	1.22
40876514--40876550	16	2.3	16	90	0	56	35	0	0	64	0.94
40876863--40876927	31	2.1	31	82	5	78	58	15	7	18	1.60
40879409--40879475	31	2.2	31	89	5	100	35	7	10	46	1.66
40890092--40890132	21	2.0	21	95	0	73	36	4	17	41	1.71
40890093--40890140	21	2.3	21	88	0	69	37	6	14	41	1.71
40903734--40903766	16	2.1	16	94	0	57	24	0	21	54	1.45
40903770--40903811	21	2.0	21	86	9	59	21	4	9	64	1.42
40912947--40912985	18	2.3	17	91	8	62	69	5	0	25	1.09
40912944--40912987	18	2.7	15	81	18	61	65	4	0	29	1.12
40918731--40918765	17	2.1	17	88	0	52	42	34	2	20	1.66
40920109--40920146	18	2.2	17	86	9	51	44	5	21	28	1.73
40920448--40920482	6	5.7	6	86	6	52	22	14	0	62	1.31
40922952--40923000	11	4.3	11	77	10	53	6	0	32	61	1.21
40925709--40925746	2	19.0	2	94	0	67	50	2	0	47	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40926223--40926257	17	2.1	17	94	0	61	25	5	8	60	1.49
40927006--40927127	64	1.9	64	96	0	226	18	22	40	18	1.92
40928996--40929036	20	2.0	20	85	0	55	41	2	17	39	1.62
40940426--40940534	37	3.1	37	60	34	87	39	9	12	38	1.76
40940401--40940536	67	2.0	67	98	0	263	42	8	13	35	1.75
40942693--40942732	21	1.9	21	85	10	55	22	10	5	62	1.46
40943506--40943656	75	2.0	75	97	0	284	41	13	27	17	1.86
40948373--40948426	19	2.9	18	78	10	56	5	22	0	72	1.05
40948383--40948431	12	3.9	12	82	15	55	2	20	0	77	0.87
40949015--40949055	15	2.7	15	85	14	50	14	2	26	56	1.51
40950055--40950208	57	2.8	56	81	4	159	24	3	41	29	1.73
40951748--40951812	31	2.1	31	91	0	103	24	13	10	50	1.74
40961069--40961104	19	1.9	20	88	11	58	36	8	5	50	1.56
41003110--41003153	21	2.1	21	91	4	72	59	6	11	22	1.55
41011568--41011622	24	2.2	25	81	15	69	38	3	14	43	1.63
41018545--41018620	3	25.3	3	70	15	50	63	5	1	30	1.25
41018560--41018645	14	6.1	14	72	11	50	67	6	1	24	1.22
41022322--41022471	75	2.0	72	88	6	221	26	13	21	39	1.90
41022663--41023413	108	6.8	108	77	8	474	26	21	14	37	1.92
41022663--41023441	35	21.3	37	80	8	658	26	21	14	37	1.92
41022704--41023432	223	3.3	223	81	8	750	26	21	14	37	1.92
41022663--41023422	260	3.0	254	80	7	837	26	21	14	37	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41029349--41029391	21	2.0	21	81	0	50	58	6	0	34	1.25
41037354--41037406	26	2.0	26	100	0	106	37	11	7	43	1.69
41038772--41039256	240	2.0	240	93	2	832	28	13	20	38	1.90
41044600--41044654	24	2.2	24	80	3	65	49	1	3	45	1.30
41045906--41045953	24	2.0	25	84	12	64	60	8	0	31	1.26
41047654--41047693	16	2.4	17	83	8	55	72	2	7	17	1.19
41048628--41048661	5	7.0	5	86	6	52	76	0	20	2	0.92
41048628--41048661	14	2.4	14	90	5	50	76	0	20	2	0.92
41053399--41053455	22	2.8	19	78	14	69	38	10	19	31	1.86
41053413--41053479	22	3.0	22	93	2	107	34	7	22	35	1.82
41053425--41053491	22	3.0	23	82	6	77	34	5	19	40	1.76
41054019--41054095	37	2.1	37	80	11	86	37	9	1	51	1.42
41054171--41054231	27	2.3	27	86	11	81	32	8	1	57	1.38
41058766--41058859	47	2.1	44	88	7	143	43	13	22	19	1.86
41060023--41060146	61	2.0	61	98	0	239	37	12	13	36	1.82
41060939--41061053	44	2.6	44	89	5	171	25	18	28	27	1.98
41060978--41061091	44	2.6	44	81	5	115	27	19	24	28	1.98
41061020--41061295	128	2.1	129	84	5	385	31	21	22	25	1.98
41061353--41061620	50	5.4	50	73	0	275	29	20	23	26	1.99
41061358--41061644	100	2.9	100	95	1	504	28	21	22	27	1.99
41062411--41062464	19	2.8	19	100	0	108	37	11	16	35	1.84
41062691--41062735	23	2.0	23	81	0	54	22	0	15	62	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41063025--41063102	38	2.0	38	80	11	88	37	8	1	52	1.41
41067880--41067925	24	1.9	24	90	0	74	41	19	6	32	1.77
41071492--41071562	29	2.5	28	73	13	72	32	2	2	61	1.24
41072695--41072832	55	2.5	55	91	2	215	29	18	5	46	1.72
41074541--41074609	23	2.9	24	78	4	77	23	24	24	27	2.00
41074543--41074630	24	3.7	24	75	11	74	25	22	25	27	2.00
41081221--41081352	45	2.9	45	80	2	131	43	12	19	24	1.85
41085351--41086059	353	2.0	353	100	0	1418	26	18	19	35	1.95
41090656--41090792	49	2.6	52	81	11	172	24	18	32	24	1.97
41097602--41097631	8	3.8	8	100	0	60	63	0	0	36	0.95
41112412--41112511	52	1.9	52	93	0	173	33	16	10	41	1.81
41114249--41114671	209	2.0	209	95	0	756	45	9	14	30	1.78
41116717--41116787	36	2.0	35	89	5	108	60	7	5	26	1.45
41122420--41122610	50	3.8	50	81	2	197	22	27	21	28	1.99
41126320--41126463	41	3.5	41	85	5	204	27	19	27	25	1.99
41128888--41129012	44	2.9	43	81	9	139	31	28	17	22	1.97
41131552--41131732	40	4.6	40	83	0	202	46	25	13	13	1.80
41137594--41137755	43	3.8	42	79	3	155	30	24	16	29	1.96
41145285--41145324	21	1.9	21	90	10	64	45	20	5	30	1.72
41147511--41147668	43	3.7	43	83	6	205	29	23	16	31	1.96
41149016--41149058	22	2.0	22	85	0	59	48	9	6	34	1.62
41150570--41151149	114	5.1	114	82	5	633	25	22	25	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41150570--41151151	227	2.6	226	82	5	687	25	22	25	26	2.00
41151800--41151845	14	3.3	14	81	0	56	15	0	43	41	1.46
41152194--41152242	14	3.6	14	83	5	55	12	0	42	44	1.41
41152203--41152246	14	3.2	14	83	6	63	6	0	43	50	1.29
41153259--41153606	146	2.4	146	77	8	364	27	15	22	35	1.94
41154548--41154579	15	2.1	15	94	0	55	25	6	15	53	1.65
41155552--41155663	13	8.5	13	79	5	109	41	9	2	46	1.51
41155805--41156003	29	6.4	29	64	21	100	45	14	1	39	1.51
41155865--41156045	67	2.8	64	73	17	178	45	14	1	38	1.52
41155929--41156073	28	5.0	28	75	15	123	45	15	1	37	1.55

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141