genome.fa.s6.2.7.7.80.10.50.1000.69.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  42799318

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  69  of  141  ( 16820 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20127821--20127905	35	2.4	33	79	14	89	50	2	0	47	1.14
20127839--20127903	16	3.8	16	70	20	51	50	1	0	47	1.10
20127857--20127919	26	2.7	21	72	27	56	55	0	0	44	0.99
20127862--20127912	26	1.9	27	88	11	79	54	0	0	45	0.99
20127946--20128011	10	7.3	9	71	23	50	45	0	4	50	1.22
20127911--20128142	44	5.0	47	70	20	175	46	3	3	46	1.36
20127871--20128142	91	3.0	91	91	3	449	47	2	3	46	1.32
20127971--20128016	18	2.7	18	86	6	60	47	2	4	45	1.34
20132350--20132465	35	3.3	35	71	2	115	31	23	22	23	1.99
20132328--20132573	71	3.4	71	78	9	239	30	23	22	23	1.99
20132478--20132591	36	2.9	39	77	12	128	34	21	21	21	1.97
20132436--20132591	76	2.1	76	86	4	217	31	21	23	23	1.98
20132369--20132573	36	5.6	36	73	7	146	30	23	22	22	1.99
20133983--20134044	31	2.0	31	100	0	124	32	9	16	41	1.80
20139613--20139934	159	2.0	158	98	0	626	37	24	3	34	1.71
20141340--20141465	66	1.9	66	82	6	157	36	7	12	43	1.70
20142591--20142851	90	2.9	90	83	2	310	28	21	14	36	1.92
20145161--20145221	20	2.9	21	80	14	63	50	0	3	45	1.17
20145159--20145222	25	2.7	24	81	15	80	51	0	3	45	1.17
20147086--20147640	196	2.9	193	77	8	480	32	19	21	26	1.97
20147428--20147508	40	2.0	40	90	4	128	28	16	27	28	1.97
20147436--20147529	40	2.3	40	83	3	109	26	19	27	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20147723--20147760	7	5.4	7	96	0	67	15	0	15	68	1.22
20147714--20147760	21	2.2	21	84	0	58	17	0	21	61	1.34
20147819--20147877	14	4.0	14	72	10	55	18	0	42	38	1.51
20147937--20147994	14	4.1	14	82	4	64	22	0	43	34	1.54
20147813--20148004	78	2.6	73	77	13	187	21	0	38	39	1.57
20147927--20147984	28	2.1	28	84	12	75	20	0	41	37	1.53
20148048--20148166	7	16.9	7	66	11	55	23	2	35	38	1.69
20148041--20148124	21	4.0	21	71	11	64	25	1	34	39	1.64
20148579--20148617	20	2.0	20	100	0	78	28	35	0	35	1.58
20151108--20151152	3	14.7	3	83	4	54	62	0	4	33	1.15
20151089--20151151	15	3.9	15	75	8	54	57	1	7	33	1.37
20152800--20153026	123	1.9	121	94	1	400	43	8	4	44	1.54
20153090--20153455	9	42.1	9	69	15	116	49	14	0	35	1.48
20153241--20153283	15	2.9	15	89	0	68	55	11	0	32	1.36
20153241--20153410	31	5.7	31	67	23	107	50	14	0	35	1.44
20153188--20153455	84	3.2	84	92	4	409	48	14	0	36	1.45
20161448--20161588	44	3.3	43	82	8	155	24	15	26	33	1.95
20163342--20163416	33	2.3	33	80	11	84	20	6	8	65	1.42
20164608--20164655	21	2.2	22	77	3	53	31	35	12	20	1.90
20171312--20171345	16	2.1	17	88	5	52	64	0	2	32	1.08
20171380--20171527	76	1.9	76	97	0	278	41	9	8	40	1.69
20171599--20171653	26	2.0	26	82	6	65	36	3	1	58	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20171610--20171667	26	2.2	25	79	8	62	37	5	0	56	1.21
20171866--20171898	9	3.7	9	95	0	57	24	0	6	69	1.10
20173029--20173090	31	2.0	32	84	9	83	54	0	3	41	1.16
20173066--20173102	18	2.2	18	85	9	51	64	0	5	29	1.15
20175790--20175916	41	3.1	40	77	13	132	53	9	12	24	1.68
20175811--20175916	21	5.1	21	70	8	92	53	10	11	24	1.67
20175791--20175905	61	1.9	61	83	7	153	53	9	13	24	1.69
20183127--20183169	18	2.4	18	92	3	70	25	11	13	48	1.77
20195036--20195103	32	2.2	32	97	2	129	41	17	14	26	1.88
20201740--20202110	104	3.6	104	95	0	636	18	19	30	30	1.96
20203632--20203739	38	2.8	38	91	0	171	31	10	21	37	1.87
20204172--20204211	20	2.0	20	90	4	64	27	12	12	47	1.77
20206829--20206861	17	2.0	17	88	5	50	51	0	3	45	1.16
20224203--20224413	88	2.4	88	81	7	232	35	17	9	37	1.82
20224869--20224894	13	2.0	13	100	0	52	38	0	23	38	1.55
20224929--20224993	19	3.3	19	75	12	51	29	7	1	61	1.33
20224988--20225058	24	3.2	22	84	9	99	33	4	1	60	1.25
20225459--20225524	13	5.1	13	75	14	64	36	6	19	37	1.77
20225462--20225524	26	2.4	25	77	12	74	36	4	20	38	1.74
20231732--20231780	20	2.3	21	83	16	66	65	0	2	32	1.04
20232143--20247890	830	18.9	830	81	6	17039	31	16	16	36	1.91
20232143--20247890	415	37.8	415	80	7	15333	31	16	16	36	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20238980--20239281	151	2.0	151	94	1	534	41	12	18	27	1.86
20251615--20251680	18	3.8	18	80	4	73	46	10	15	27	1.78
20252751--20252905	51	3.2	50	83	11	196	30	22	13	33	1.93
20252814--20252918	44	2.4	44	93	0	174	33	22	14	29	1.94
20255608--20255742	54	2.5	54	85	0	180	17	37	22	22	1.94
20256772--20256896	43	2.9	43	84	4	155	32	25	14	28	1.95
20258858--20258901	11	4.1	11	76	5	54	22	6	13	56	1.61
20258864--20258904	21	2.0	21	90	0	64	29	4	9	56	1.53
20260950--20261039	45	2.0	45	100	0	180	20	15	33	31	1.93
20263005--20263239	107	2.2	109	80	7	266	40	14	17	27	1.89
20263453--20263654	109	1.8	111	84	6	277	35	17	17	29	1.93
20264298--20264575	104	2.6	102	82	10	328	29	18	18	33	1.95
20264298--20264567	100	2.6	102	82	9	303	30	18	19	32	1.96
20267962--20268008	21	2.2	22	84	3	60	55	2	4	38	1.31
20269811--20269853	16	2.7	15	76	13	50	55	0	2	41	1.12
20271387--20272867	740	2.0	740	99	0	2937	32	11	6	49	1.65
20272903--20272957	23	2.3	23	80	17	60	49	1	1	47	1.23
20272912--20272959	19	2.5	20	77	16	55	54	0	0	45	0.99
20277518--20277566	22	2.2	22	82	7	55	67	10	0	22	1.20
20278483--20278531	23	2.2	23	85	3	64	69	4	8	18	1.30
20279375--20279489	40	2.8	40	78	1	113	30	20	20	28	1.98
20279549--20279662	44	2.6	42	81	5	111	29	21	15	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20279647--20279748	44	2.3	44	81	3	107	25	26	16	31	1.97
20279415--20280952	312	4.9	312	92	0	2481	28	21	18	32	1.96
20280580--20281270	268	2.6	267	88	4	989	28	21	18	31	1.97
20280217--20281345	580	1.9	580	89	2	1741	28	20	18	31	1.96
20279415--20281220	624	2.9	620	86	5	2373	28	21	18	32	1.96
20279828--20281273	44	32.5	43	70	16	330	28	21	18	31	1.96
20279156--20281220	88	23.2	88	65	16	449	28	21	18	31	1.97
20286951--20287013	30	2.1	30	93	0	108	57	17	3	22	1.54
20287657--20287683	2	13.5	2	100	0	54	0	0	48	51	1.00
20290704--20290783	29	3.0	29	65	28	77	27	27	1	43	1.63
20290681--20290783	51	2.0	52	92	1	172	25	28	1	44	1.65
20290681--20290771	11	8.5	11	70	18	59	24	28	2	45	1.65
20292610--20292652	18	2.4	18	84	0	50	20	25	9	44	1.81
20296328--20296630	126	2.4	126	88	0	444	27	21	18	32	1.97
20297753--20297822	29	2.5	28	75	9	70	38	5	4	51	1.45
20303190--20303250	9	6.8	9	94	0	95	37	27	9	24	1.87
20311453--20311493	21	2.0	21	90	0	64	29	21	29	19	1.98
20313399--20313432	16	2.1	16	88	0	50	50	14	17	17	1.79
20314471--20314512	22	1.9	22	85	9	59	16	2	9	71	1.23
20315003--20315027	4	6.2	4	100	0	50	76	0	0	24	0.80
20322649--20322727	36	2.2	37	95	2	142	40	5	0	54	1.22
20322765--20322832	25	2.7	24	77	11	66	50	1	2	45	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20322760--20322816	30	1.9	29	86	10	80	49	1	1	47	1.22
20323014--20323048	19	1.9	17	88	11	52	40	0	14	45	1.45
20324551--20324594	20	2.2	20	88	8	63	56	2	0	40	1.11
20324555--20324593	9	4.1	9	84	12	51	56	2	0	41	1.13
20326126--20326155	16	1.9	16	93	6	53	40	0	6	53	1.27
20326904--20326969	3	22.0	3	100	0	132	66	0	33	0	0.92
20327574--20327603	9	3.3	9	90	0	51	13	0	26	60	1.34
20333435--20333637	96	2.1	96	100	0	406	30	23	18	27	1.98
20334036--20334071	19	1.9	19	88	5	56	58	8	0	33	1.28
20334647--20334693	24	1.9	25	82	4	60	46	2	0	51	1.13

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141