genome.fa.s6.2.7.7.80.10.50.1000.16.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  42799318

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  16  of  141  ( 16820 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4826491--4826526	18	2.0	18	94	0	63	25	27	8	38	1.84
4826959--4827006	25	1.9	25	100	0	96	45	0	14	39	1.45
4827052--4827788	23	33.1	22	73	16	458	47	25	0	26	1.57
4827054--4827779	91	7.9	90	81	10	553	47	25	0	25	1.58
4827241--4827779	45	12.0	45	78	10	548	47	24	0	26	1.58
4827239--4827779	90	6.0	91	84	5	629	47	25	0	26	1.58
4827782--4828025	116	2.1	116	93	1	409	40	9	6	43	1.63
4831034--4831409	124	3.0	124	86	2	513	32	21	15	30	1.94
4833165--4833215	27	1.9	26	92	4	84	54	5	3	35	1.43
4854765--4854833	24	2.9	24	82	4	95	37	4	8	49	1.54
4866290--4867187	447	2.0	447	94	0	1589	31	22	14	31	1.94
4873251--4873306	21	2.7	21	82	0	67	44	32	12	10	1.77
4877605--4877629	5	5.0	5	100	0	50	20	0	0	80	0.72
4880912--4881106	30	6.5	30	74	8	139	21	27	12	38	1.90
4880912--4881106	60	3.3	60	72	8	191	21	27	12	38	1.90
4880904--4881073	90	1.9	90	84	4	227	22	27	12	37	1.91
4883395--4883651	27	9.5	27	80	3	239	44	18	18	19	1.87
4883395--4883708	54	5.6	54	78	3	277	43	18	18	19	1.88
4883395--4883652	81	3.2	82	85	3	326	44	18	18	18	1.87
4883612--4883687	36	2.1	36	82	4	91	47	18	17	17	1.83
4883648--4883707	27	2.2	27	87	0	84	43	16	20	20	1.88
4894385--4894428	22	2.0	21	83	12	54	40	0	0	59	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4904265--4904541	27	10.3	26	79	8	243	42	16	21	19	1.89
4904265--4904540	54	5.1	52	80	8	295	42	16	21	19	1.89
4904265--4904541	81	3.4	81	82	6	328	42	16	21	19	1.89
4904934--4905000	28	2.4	28	92	0	116	23	22	23	29	1.99
4907287--4907314	10	2.8	10	100	0	56	21	14	0	64	1.29
4908297--4908547	40	6.3	40	85	0	286	13	16	25	44	1.85
4921080--4921300	51	4.4	51	77	7	200	26	16	26	30	1.97
4921133--4921254	50	2.4	51	86	1	156	24	16	27	31	1.96
4925105--4925138	16	2.2	15	89	5	50	44	0	0	55	0.99
4931132--4931162	5	6.2	5	92	0	53	0	25	0	74	0.82
4934682--4934713	16	2.0	16	93	0	55	59	0	15	25	1.36
4935391--4935431	16	2.6	16	96	0	73	34	2	17	46	1.61
4941877--4942125	76	3.4	73	77	10	254	44	6	9	40	1.61
4943117--4943289	25	7.0	25	85	3	181	23	23	21	31	1.98
4945039--4945089	26	2.0	25	92	3	84	31	19	11	37	1.88
4950211--4950332	23	5.3	23	87	0	190	31	26	20	21	1.98
4950558--4950596	18	2.2	17	86	13	53	46	20	0	33	1.51
4952897--4952937	21	1.9	22	85	14	59	48	9	4	36	1.58
4953709--4953778	34	2.1	34	94	0	122	42	2	34	20	1.66
4957617--4957642	5	5.2	5	100	0	52	38	19	19	23	1.93
4957591--4957642	26	2.0	26	81	7	61	34	15	26	23	1.94
4958531--4958567	9	4.1	9	92	0	65	29	10	13	45	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4966217--4966358	70	2.1	70	94	2	252	47	12	9	30	1.73
4969907--4969942	17	2.1	17	100	0	72	27	19	0	52	1.46
4971335--4971457	27	4.5	27	78	5	95	39	24	8	26	1.85
4971324--4971430	54	2.0	54	83	3	135	37	26	7	28	1.83
4979981--4980015	7	5.0	7	92	0	52	17	51	14	17	1.77
4980002--4980041	21	2.0	21	90	5	64	25	32	17	25	1.97
4980048--4980136	7	12.7	7	79	4	81	30	30	11	28	1.91
4980089--4980148	21	2.9	21	80	5	68	31	28	13	26	1.94
4982417--4982733	106	3.0	106	98	0	607	23	17	25	33	1.97
4985395--4985462	18	3.9	17	79	11	75	32	7	1	58	1.34
4985410--4985462	15	3.5	15	80	10	56	32	7	1	58	1.37
4985395--4985443	3	16.0	3	83	12	64	32	4	0	63	1.13
4988789--4988814	12	2.2	12	100	0	52	42	0	15	42	1.47
4990524--4990560	9	4.1	9	92	0	65	29	10	13	45	1.77
4991416--4991451	3	12.0	3	100	0	72	33	0	0	66	0.92
4991614--4991655	21	2.0	22	81	13	52	50	4	4	40	1.45
5012306--5012466	35	4.6	35	79	2	171	39	31	11	17	1.86
5021299--5021328	15	2.0	15	93	0	51	0	36	0	63	0.95
5022012--5022287	27	10.3	26	82	7	254	43	18	19	18	1.88
5022012--5022287	80	3.4	79	84	4	338	43	18	19	18	1.88
5022012--5022287	54	5.1	54	79	10	298	43	18	19	18	1.88
5022020--5022303	107	2.6	107	80	10	303	42	18	19	19	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5022635--5022757	28	4.4	28	90	2	185	25	22	21	30	1.98
5027397--5027513	57	2.1	57	98	0	225	25	3	35	35	1.73
5028946--5028987	22	2.0	21	81	13	50	2	30	2	64	1.19
5029671--5029819	27	5.5	27	83	6	185	42	18	20	18	1.90
5029671--5029819	81	1.8	81	87	5	221	42	18	20	18	1.90
5029847--5029897	27	1.9	26	80	11	50	47	21	13	17	1.82
5030238--5030321	28	3.0	28	89	0	123	23	22	21	32	1.98
5031885--5031990	53	2.0	53	85	10	146	42	15	25	16	1.87
5041644--5041677	17	2.1	17	88	5	52	58	11	14	14	1.63
5045104--5045143	19	2.1	19	95	0	71	40	15	32	12	1.84
5047682--5047712	13	2.4	13	100	0	62	77	6	0	16	0.97
5047674--5047710	19	1.9	19	94	0	65	78	8	0	13	0.96
5047718--5047751	7	4.7	7	85	7	50	82	0	17	0	0.67
5049935--5050577	43	14.9	43	66	13	212	28	20	25	25	1.99
5049923--5050534	130	4.7	130	96	0	1064	28	20	25	25	1.99
5050324--5050707	173	2.2	173	94	0	660	28	20	26	24	1.99
5050194--5051119	303	3.1	302	89	4	1306	29	20	25	25	1.99
5050522--5051445	131	6.9	130	82	9	1065	29	20	24	25	1.99
5050455--5050721	43	6.2	43	72	11	163	28	20	25	25	1.99
5050826--5050867	21	2.0	21	95	0	75	38	21	16	23	1.93
5050565--5051389	282	3.0	278	87	7	1183	29	20	24	25	1.99
5050913--5051003	43	2.1	43	85	4	121	29	20	23	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5050847--5051462	261	2.4	262	89	3	965	29	20	24	25	1.99
5052612--5052648	19	1.9	19	94	0	65	21	27	37	13	1.91
5065359--5065617	41	6.4	41	77	7	233	23	28	12	35	1.91
5065396--5065623	120	1.9	120	85	3	316	23	28	13	35	1.92
5072923--5073370	41	11.0	41	84	1	488	21	28	14	34	1.93
5073042--5073112	21	3.5	20	69	5	61	23	30	12	32	1.92
5073147--5073212	20	3.2	20	69	12	62	16	36	13	33	1.88
5072923--5073359	122	3.6	122	85	2	563	21	28	14	35	1.93
5073130--5073192	21	3.0	21	66	13	58	23	31	14	30	1.94
5073209--5073273	20	3.2	21	64	16	55	29	30	10	29	1.91
5073270--5073335	20	3.2	20	67	12	53	16	31	16	34	1.92
5072920--5073370	163	2.8	163	82	2	537	21	28	14	34	1.93
5085465--5085636	40	4.3	40	88	2	222	25	27	21	25	1.99
5091055--5091090	18	2.1	17	89	5	54	55	8	2	33	1.44
5091195--5091234	21	1.9	21	94	0	71	37	2	10	50	1.50
5102785--5102842	30	2.0	29	86	10	82	34	0	12	53	1.38
5104436--5104499	27	2.4	26	82	5	74	39	3	23	34	1.71
5104462--5104539	40	2.0	40	84	5	104	37	5	20	37	1.75
5104403--5104550	13	11.2	13	72	5	100	41	4	19	35	1.71
5104736--5105005	134	2.0	134	97	0	504	28	17	18	35	1.94
5116751--5116842	27	3.4	27	77	5	96	43	18	20	17	1.88
5117891--5118333	114	3.9	113	86	2	593	23	21	28	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5117911--5118333	229	1.9	227	88	2	650	23	21	27	26	1.99
5120016--5120055	21	1.9	21	94	0	71	10	0	45	45	1.37
5120831--5120874	15	2.8	16	82	10	54	38	4	0	56	1.20
5120939--5120995	12	4.6	12	73	16	53	54	10	0	35	1.35
5121009--5122084	9	122.8	9	66	18	395	46	19	2	32	1.61
5121009--5122084	16	61.4	18	67	17	395	46	19	2	32	1.61
5121503--5121566	25	2.6	25	85	2	85	51	20	1	26	1.56
5121593--5121935	25	13.7	25	98	1	636	48	23	0	28	1.51
5121516--5122012	25	19.9	25	88	6	129	47	22	1	29	1.58
5124905--5124973	21	3.3	21	87	0	75	33	18	43	4	1.70

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141