genome.fa.s6.2.7.7.80.10.50.1000.42.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  42799318

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  42  of  141  ( 16820 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12704032--12704800	217	3.6	215	84	4	938	29	19	22	27	1.98
12709267--12709296	6	5.0	6	95	0	51	70	0	13	16	1.18
12709582--12709638	27	2.1	27	83	0	69	17	29	35	17	1.93
12709812--12709891	9	8.0	10	76	18	62	68	0	30	1	0.97
12709834--12709878	3	15.3	3	95	4	83	68	0	31	0	0.89
12710137--12710251	34	3.3	33	69	14	104	29	0	14	55	1.40
12710134--12710298	72	2.3	72	95	0	294	28	0	16	53	1.48
12710273--12710701	208	2.1	206	84	11	558	29	0	15	54	1.44
12710273--12710702	103	4.2	104	83	10	528	30	0	15	54	1.44
12710271--12710702	207	2.1	201	84	11	554	29	0	15	54	1.44
12711725--12711816	28	3.4	28	93	3	161	38	10	0	51	1.37
12711874--12711949	27	2.8	26	80	7	89	23	22	32	21	1.98
12712086--12712124	19	2.0	21	85	10	55	17	0	12	69	1.19
12712180--12712235	3	18.7	3	92	0	94	32	0	3	64	1.11
12713058--12713102	18	2.5	18	92	0	72	31	4	48	15	1.65
12716525--12716549	7	3.6	7	100	0	50	16	0	44	40	1.47
12717497--12717960	160	2.9	160	69	13	401	31	11	7	49	1.68
12718024--12718079	27	2.1	27	93	0	94	8	32	14	44	1.76
12718829--12718883	18	3.1	18	72	15	51	0	30	0	69	0.89
12718835--12718992	42	4.0	41	77	15	163	1	29	0	69	0.96
12718861--12719009	4	37.0	4	76	17	123	1	28	0	69	0.96
12718797--12718996	79	2.6	74	80	14	212	1	30	0	69	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12718835--12718924	46	2.0	46	82	12	114	1	27	0	71	0.94
12718848--12718961	41	2.9	37	77	14	113	1	32	0	65	1.03
12719053--12719131	27	2.9	27	88	0	113	16	31	22	29	1.96
12719189--12719247	26	2.4	26	91	8	97	45	0	11	42	1.41
12721737--12721789	25	2.2	24	80	6	63	30	20	30	18	1.97
12721796--12721855	26	2.3	26	85	5	86	38	23	21	16	1.93
12721796--12721862	26	2.6	26	81	13	77	37	22	22	17	1.94
12722873--12722900	13	2.2	13	100	0	56	14	14	0	71	1.15
12723505--12723599	33	2.9	33	88	3	147	17	50	9	22	1.75
12723816--12724045	76	3.0	76	87	5	313	26	7	11	54	1.62
12726377--12726571	43	4.6	42	78	10	209	21	17	26	34	1.95
12726377--12726613	85	2.8	84	88	0	330	23	17	24	34	1.96
12729579--12729634	27	2.1	27	93	0	94	25	23	30	21	1.99
12730164--12730206	15	3.0	13	83	16	50	60	9	2	27	1.40
12736690--12736718	11	2.5	12	94	5	51	0	58	0	41	0.98
12739531--12739558	3	9.3	3	100	0	56	35	0	0	64	0.94
12746026--12746072	19	2.4	19	75	13	51	61	0	31	6	1.21
12752260--12752324	29	2.2	29	76	15	71	50	15	1	32	1.53
12754741--12754797	20	2.9	20	80	12	64	42	19	26	12	1.86
12757748--12757777	15	2.1	14	93	6	51	66	0	26	6	1.16
12763447--12763509	24	2.6	24	100	0	126	22	14	23	39	1.91
12768020--12768061	18	2.3	18	91	0	66	14	9	23	52	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12773152--12773203	24	2.2	24	85	0	68	50	7	3	38	1.50
12777542--12777593	24	2.2	24	89	0	77	50	9	3	36	1.54
12785054--12785110	30	1.9	30	96	0	105	43	14	22	19	1.86
12791475--12791506	7	4.6	7	100	0	64	31	0	0	68	0.90
12797097--12797134	15	2.6	15	91	4	60	44	0	7	47	1.32
12803520--12803566	12	3.9	12	76	17	53	23	6	0	70	1.10
12803508--12803558	17	3.1	17	78	15	63	19	3	0	76	0.94
12803509--12803566	27	2.3	26	88	8	84	20	5	0	74	1.01
12803713--12803776	22	2.8	22	76	11	58	25	48	9	17	1.76
12805455--12805489	15	2.4	15	90	4	54	48	0	8	42	1.33
12806793--12806866	37	2.0	37	100	0	148	37	8	13	40	1.74
12809363--12809400	20	2.0	20	89	5	60	42	5	13	39	1.66
12810288--12810380	40	2.3	40	81	9	109	32	19	22	25	1.97
12810473--12810593	41	3.0	41	87	0	161	23	20	24	30	1.99
12813633--12813690	23	2.5	23	91	0	89	32	1	20	44	1.62
12813680--12813882	23	8.9	23	77	10	184	31	5	23	39	1.79
12813657--12813882	46	4.9	46	79	7	228	31	5	23	40	1.77
12813703--12813868	91	1.8	91	85	2	235	31	5	23	39	1.77
12814800--12815029	43	5.3	43	91	0	334	22	17	30	28	1.97
12816582--12816859	122	2.3	123	94	2	479	29	16	20	34	1.94
12824457--12824562	53	2.0	52	94	1	185	34	28	15	21	1.94
12826792--12827139	30	11.8	29	88	2	507	28	0	24	46	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12826792--12827139	59	5.9	59	89	3	513	28	0	24	46	1.58
12829042--12829097	25	2.3	25	80	14	64	62	5	0	32	1.18
12829188--12829253	30	2.2	31	94	2	116	65	0	0	34	0.93
12829286--12829344	30	2.0	30	93	0	100	37	0	30	32	1.58
12830064--12830106	22	2.0	21	82	13	52	65	2	2	30	1.18
12834670--12834729	30	2.0	31	86	3	86	40	0	40	20	1.52
12834943--12834970	9	3.1	9	100	0	56	32	10	10	46	1.73
12835024--12835065	9	4.7	9	84	0	57	35	23	11	28	1.91
12832955--12834835	953	2.0	941	95	1	2406	37	6	19	36	1.78
12835183--12835232	23	2.3	22	83	13	59	80	6	6	8	1.04
12836811--12837022	16	13.2	16	99	0	406	25	0	37	36	1.57
12837003--12837112	45	2.6	41	81	9	125	32	4	29	33	1.78
12837238--12837279	15	2.7	16	82	14	52	52	2	0	45	1.13
12837247--12837288	15	2.9	15	82	10	52	52	0	0	47	1.00
12843162--12843237	27	2.8	27	89	0	116	26	27	28	17	1.97
12843153--12843237	27	3.2	25	75	12	80	25	27	29	17	1.98
12843384--12843422	19	2.0	21	85	10	55	23	0	10	66	1.22
12843498--12843535	3	12.7	3	100	0	76	0	0	31	68	0.90
12846851--12846999	23	6.2	24	71	18	71	0	28	0	71	0.87
12846849--12847040	28	6.6	28	72	16	108	0	29	0	70	0.88
12846900--12847046	4	34.8	4	75	18	106	0	27	0	72	0.85
12846871--12847048	53	3.2	53	82	13	193	0	28	0	71	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12846927--12847046	39	3.2	39	84	8	158	0	29	0	70	0.87
12847051--12847125	27	2.8	26	86	13	107	42	0	9	48	1.35
12858988--12859028	19	2.2	19	90	0	64	41	14	4	39	1.67
12868158--12868209	20	2.7	20	79	5	54	55	3	3	36	1.36
12868609--12868637	14	2.1	14	100	0	58	41	6	6	44	1.58
12868842--12868912	33	2.3	31	83	11	83	33	0	4	61	1.15
12870119--12870200	41	2.0	41	100	0	164	24	31	14	29	1.95
12875682--12875723	12	3.5	12	78	12	50	57	0	21	21	1.41
12875872--12875944	26	2.8	26	85	2	92	42	10	19	27	1.84
12887555--12887588	17	2.0	17	94	0	59	32	41	0	26	1.56
12887578--12887640	18	3.6	18	80	4	74	30	26	9	33	1.88
12887927--12888007	36	2.2	36	78	4	92	37	25	7	29	1.83
12890386--12890424	20	2.0	20	90	10	62	51	5	10	33	1.58
12890908--12890965	28	2.1	28	100	0	116	25	39	20	13	1.90
12892395--12892570	45	3.9	45	86	3	230	21	13	28	36	1.91
12896778--12896863	32	2.7	32	85	0	118	22	23	38	16	1.93
12898985--12899035	25	2.0	26	84	3	68	45	7	7	39	1.62
12899170--12899265	30	3.2	30	70	14	88	47	7	3	41	1.47
12901480--12901517	19	2.0	19	90	10	60	36	10	10	42	1.74
12903896--12904012	62	1.9	61	86	5	166	50	2	3	43	1.32
12903896--12904096	62	3.2	59	73	16	163	51	3	3	41	1.36
12903986--12904098	12	9.8	12	69	20	55	53	3	2	40	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12903988--12904097	20	5.9	18	70	21	68	52	3	2	40	1.33
12903988--12904098	37	3.0	36	79	16	113	53	3	2	40	1.33
12905710--12905751	20	2.2	18	91	8	66	78	4	7	9	1.08
12911492--12911531	19	2.1	19	85	0	53	37	2	5	55	1.35
12912337--12912391	23	2.4	23	90	3	85	47	14	9	29	1.75
12914874--12914900	12	2.2	12	100	0	54	33	7	14	44	1.73
12918098--12918150	20	2.7	20	81	0	61	60	0	1	37	1.08
12924039--12924086	23	2.1	23	88	0	69	37	16	18	27	1.92
12925646--12925789	46	3.1	46	85	2	180	29	18	21	30	1.97
12925646--12925818	94	1.9	92	81	4	213	31	19	19	29	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141