genome.fa.s6.2.7.7.80.10.50.1000.35.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  42799318

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  35  of  141  ( 16820 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10565712--10565805	42	2.2	42	84	3	116	53	3	7	36	1.45
10565794--10565848	25	2.2	25	78	21	62	47	7	9	36	1.63
10565800--10565854	23	2.2	24	84	15	69	45	7	9	38	1.64
10569442--10569466	10	2.5	10	100	0	50	76	0	0	24	0.80
10569579--10569607	5	5.8	5	100	0	58	58	0	41	0	0.98
10574976--10575069	20	4.8	20	69	12	70	56	3	0	40	1.15
10574965--10575087	57	2.1	58	89	1	185	52	3	0	43	1.17
10576044--10576481	218	2.0	218	100	0	876	36	17	13	33	1.88
10578670--10578695	11	2.4	11	100	0	52	84	0	15	0	0.62
10581165--10581199	11	3.3	11	84	8	54	65	11	11	11	1.47
10584426--10584461	17	2.0	19	89	10	58	61	0	0	38	0.96
10591995--10592037	3	14.0	3	95	4	77	32	2	0	65	1.06
10597287--10597344	7	8.7	6	78	17	53	65	0	20	13	1.26
10597276--10597344	21	3.4	20	76	20	72	63	0	21	14	1.30
10598634--10599880	45	28.2	45	76	9	731	31	15	22	30	1.95
10598677--10599880	89	13.7	89	74	10	790	31	16	22	29	1.95
10598634--10599881	134	9.4	134	82	6	1119	31	16	22	30	1.95
10601440--10601498	3	19.0	3	83	13	75	32	5	0	62	1.17
10601912--10601955	22	2.0	23	90	4	72	31	6	0	61	1.22
10607379--10607436	29	2.0	30	83	10	75	53	0	1	44	1.10
10613361--10613588	88	2.6	88	84	5	289	37	21	8	32	1.84
10613592--10613618	12	2.2	12	100	0	54	77	0	7	14	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10613675--10613721	21	2.2	21	88	7	69	65	0	8	25	1.20
10613697--10613721	13	1.9	13	100	0	50	68	0	8	24	1.16
10613685--10613732	21	2.3	21	92	0	78	64	0	6	29	1.18
10613708--10613775	27	2.4	27	85	4	82	64	1	4	29	1.21
10614038--10614132	18	5.2	18	71	13	61	40	2	0	57	1.10
10615821--10615887	34	1.9	35	87	3	100	31	8	14	44	1.76
10623283--10623320	11	3.5	11	100	0	76	23	7	18	50	1.73
10624691--10624724	17	2.0	17	94	0	59	44	5	0	50	1.26
10624691--10624729	17	2.4	16	87	8	53	43	5	0	51	1.24
10624695--10624734	17	2.3	18	83	12	57	47	5	0	47	1.24
10624727--10624939	66	3.4	62	67	22	167	41	2	6	48	1.43
10624814--10624865	15	3.6	15	80	12	56	44	0	1	53	1.11
10624690--10624986	120	2.5	120	92	4	494	42	2	5	49	1.38
10624943--10624984	15	2.7	16	82	14	52	45	0	2	52	1.13
10624934--10624975	15	2.9	15	82	10	52	47	0	0	52	1.00
10624910--10625222	155	2.0	154	93	1	518	48	4	3	43	1.39
10625085--10625119	18	2.0	17	88	5	52	45	0	0	54	0.99
10625267--10625371	44	2.5	40	76	15	113	31	27	4	36	1.78
10625280--10625374	45	2.1	45	88	1	138	33	26	5	34	1.79
10625353--10625390	16	2.4	16	90	0	58	34	34	0	31	1.58
10631614--10631646	16	2.0	17	88	5	50	51	18	3	27	1.60
10633321--10633441	42	2.8	42	77	12	122	30	26	19	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10634609--10634634	11	2.4	11	100	0	52	69	0	0	30	0.89
10634672--10634730	21	2.8	21	78	0	55	23	18	38	18	1.93
10636108--10636182	37	2.0	37	97	0	141	45	24	14	16	1.84
10638627--10638754	41	3.1	40	77	4	139	22	23	28	25	1.99
10643714--10643779	21	3.1	21	78	6	80	22	21	28	27	1.99
10650878--10650995	57	2.1	58	85	1	157	28	17	7	45	1.76
10655997--10656031	8	4.5	8	92	7	63	85	0	14	0	0.59
10671365--10671406	16	2.6	16	85	11	50	61	2	7	28	1.35
10675283--10675310	2	14.0	2	100	0	56	50	0	50	0	1.00
10675862--10675964	43	2.4	43	83	1	134	37	27	12	22	1.90
10677353--10677380	12	2.3	12	100	0	56	50	10	7	32	1.64
10678569--10678602	14	2.5	14	95	4	61	38	0	61	0	0.96
10679714--10679742	15	1.9	15	100	0	58	34	51	0	13	1.42
10679722--10679774	21	2.5	22	81	9	65	39	39	0	20	1.53
10679991--10680039	23	2.2	22	89	10	73	32	46	2	18	1.60
10679990--10680036	14	3.2	15	82	11	53	31	44	2	21	1.64
10680003--10680036	14	2.2	16	90	10	54	32	47	0	20	1.51
10680028--10680068	21	2.0	21	85	4	57	41	41	0	17	1.49
10680055--10680101	15	3.3	15	79	8	53	40	29	0	29	1.57
10680506--10680624	41	2.9	42	83	2	150	31	27	17	22	1.97
10680518--10680638	41	2.9	41	83	1	143	29	27	19	23	1.98
10681492--10681543	28	1.9	26	84	7	68	34	13	9	42	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10691505--10691532	14	2.0	14	100	0	56	7	42	7	42	1.59
10692220--10692251	17	1.9	16	93	6	55	12	12	0	75	1.06
10694919--10694975	15	4.1	15	73	17	59	43	0	0	56	0.99
10694772--10694992	119	1.9	120	96	0	408	41	1	3	53	1.25
10694829--10695011	41	4.6	40	67	22	116	40	1	3	54	1.27
10694968--10695026	18	3.4	17	88	9	84	40	1	1	55	1.20
10695183--10695279	45	2.2	45	88	5	144	31	29	5	32	1.80
10695259--10695305	16	2.9	16	93	0	85	19	34	6	40	1.77
10699506--10699601	51	1.9	51	85	4	133	45	5	17	31	1.70
10713235--10713268	13	2.6	13	90	9	52	79	17	2	0	0.86
10713271--10713316	20	2.2	21	84	3	58	80	0	2	17	0.81
10714524--10714564	16	2.6	16	88	7	57	80	0	2	17	0.82
10715353--10715429	37	2.1	37	95	0	136	42	16	3	36	1.67
10720171--10720210	11	3.2	12	80	19	55	7	5	7	80	1.03
10720171--10720219	25	2.0	25	84	8	64	12	6	6	75	1.17
10720210--10720266	13	4.2	13	80	6	60	40	1	1	56	1.20
10720339--10720401	22	2.8	22	90	2	90	46	0	1	52	1.10
10720388--10720449	31	1.9	31	83	6	79	43	1	1	53	1.20
10721637--10721721	9	9.1	9	75	17	68	34	3	1	61	1.21
10721598--10721717	49	2.4	49	76	10	120	32	5	0	61	1.23
10721598--10721742	9	14.7	10	68	17	65	35	4	0	59	1.22
10721607--10721718	19	5.8	19	72	14	77	32	4	0	62	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10724287--10724315	13	2.3	13	94	5	51	6	41	0	51	1.28
10751199--10751230	14	2.3	14	94	0	55	62	21	3	12	1.43
10754638--10754745	9	11.7	9	68	18	53	57	15	2	24	1.52
10754632--10754750	47	2.4	49	75	15	113	57	15	3	23	1.52
10755282--10755350	25	2.9	25	76	20	76	31	14	24	28	1.95
10757779--10757871	14	6.4	15	75	13	54	36	39	0	23	1.55
10757809--10757847	7	5.4	7	81	6	51	35	46	0	17	1.49
10757810--10757871	22	2.9	22	82	2	63	37	45	0	17	1.49
10757830--10757882	21	2.5	22	81	9	65	39	39	0	20	1.53
10758155--10758185	15	2.1	15	93	0	53	35	45	0	19	1.51
10758615--10758779	73	2.3	73	88	0	240	26	24	20	29	1.99
10758688--10758893	114	1.8	114	92	0	349	28	25	19	26	1.99
10758520--10759089	187	3.0	187	90	1	876	27	25	21	25	2.00
10758802--10758975	73	2.4	73	97	0	321	25	25	22	25	2.00
10758875--10759431	114	4.9	114	88	0	792	27	25	20	26	1.99
10758520--10759317	301	2.6	298	71	8	786	27	25	21	26	1.99
10759334--10759502	73	2.3	72	83	1	212	24	23	23	29	1.99
10765655--10765744	27	3.3	27	84	9	112	15	36	33	14	1.88
10765807--10765908	5	21.4	5	73	10	65	67	0	32	0	0.91
10765791--10765960	36	4.4	36	84	10	162	67	0	32	0	0.91
10765796--10765934	31	4.4	32	77	13	119	69	0	30	0	0.89
10765799--10765939	67	2.1	67	80	10	164	69	0	30	0	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10765798--10765956	41	4.1	41	85	10	185	68	0	31	0	0.90
10766315--10766866	159	3.5	155	74	13	509	53	7	9	29	1.59
10766289--10766972	317	2.2	317	90	0	1091	52	7	9	29	1.62
10772194--10772242	25	1.9	26	83	4	64	57	12	0	30	1.36
10772318--10772354	10	3.6	10	88	3	56	0	29	0	70	0.88
10775798--10775859	31	2.1	29	84	6	79	41	14	9	33	1.79
10775797--10775862	29	2.3	27	78	14	69	40	13	10	34	1.79
10776615--10776662	18	2.7	18	78	18	55	27	2	0	70	0.98
10777130--10777182	14	4.0	12	79	16	52	49	3	1	45	1.31
10777137--10777182	14	3.5	13	82	11	58	52	4	2	41	1.33

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141