genome.fa.s6.2.7.7.80.10.50.1000.79.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  42799318

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  79  of  141  ( 16820 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22797477--22797562	43	2.0	43	90	0	136	30	9	34	25	1.87
22798994--22799018	10	2.5	10	100	0	50	48	8	12	32	1.69
22799014--22799069	26	2.2	26	100	0	112	30	7	26	35	1.83
22801981--22802031	24	2.1	24	92	0	84	33	1	7	56	1.39
22816530--22816563	17	1.9	18	94	5	61	58	5	8	26	1.51
22817297--22817330	10	3.4	10	91	0	59	58	0	8	32	1.29
22817295--22817340	20	2.3	19	82	10	56	63	0	8	28	1.24
22817962--22817994	7	4.9	7	85	7	50	0	12	0	87	0.53
22819016--22819051	6	6.0	6	100	0	72	83	0	0	16	0.65
22821979--22822012	17	1.9	18	94	5	61	58	5	8	26	1.51
22822731--22822764	10	3.4	10	95	0	59	64	0	8	26	1.22
22822731--22822776	10	4.6	10	91	5	58	65	2	6	26	1.28
22824842--22824881	7	5.7	7	93	0	71	17	40	0	42	1.49
22832278--22832338	30	2.0	30	93	0	104	27	47	3	21	1.66
22832867--22832996	23	5.5	23	69	17	72	35	4	3	56	1.35
22832932--22833003	25	2.8	26	79	6	85	36	5	2	55	1.38
22833021--22833079	25	2.5	24	78	10	68	33	8	6	50	1.59
22833037--22833085	25	2.0	25	91	0	80	34	8	6	51	1.57
22833245--22833278	8	4.6	7	92	3	50	32	0	2	64	1.08
22833238--22833285	16	3.1	15	90	6	69	31	2	2	64	1.16
22833191--22833278	7	12.3	7	73	20	51	28	2	2	67	1.15
22837113--22837234	63	1.9	63	93	0	208	28	22	13	35	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22839528--22839628	34	3.0	33	76	12	105	43	1	15	38	1.59
22839713--22840205	251	2.0	252	85	2	679	37	16	17	28	1.91
22839686--22840208	126	4.2	125	85	1	616	37	16	17	29	1.91
22842272--22842359	40	2.2	40	85	0	122	29	18	22	29	1.97
22842291--22842424	40	3.3	40	85	9	166	26	18	25	29	1.98
22846586--22846642	25	2.3	23	77	13	60	49	5	1	43	1.35
22847063--22847105	18	2.4	18	88	0	59	44	9	25	20	1.81
22848875--22848943	30	2.3	30	94	0	120	42	1	26	30	1.64
22859331--22859389	25	2.4	24	82	2	64	10	8	27	54	1.63
22859467--22859600	34	4.0	33	76	8	119	46	1	11	40	1.50
22859850--22860028	93	1.9	93	90	0	286	35	18	17	27	1.94
22871367--22871422	26	2.2	26	96	0	103	35	25	7	32	1.83
22871377--22871429	26	2.2	23	83	12	63	33	22	3	39	1.72
22874510--22874566	25	2.3	23	81	18	71	52	3	0	43	1.18
22874986--22875029	18	2.4	18	92	0	70	45	6	27	20	1.76
22876789--22876832	21	2.1	21	82	0	52	40	2	25	31	1.68
22876794--22876858	30	2.2	30	94	0	112	40	1	30	27	1.66
22876800--22876857	9	5.8	9	74	21	53	41	0	27	31	1.56
22884776--22884821	24	1.9	24	86	0	65	52	2	0	45	1.13
22885628--22885718	32	2.9	31	88	3	128	41	8	13	36	1.75
22885626--22885722	31	3.1	31	88	2	140	41	8	14	36	1.76
22887318--22887348	16	1.9	16	93	0	53	41	6	6	45	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22896372--22896438	34	1.9	35	87	3	100	44	14	8	31	1.76
22900025--22900180	42	3.7	41	72	17	131	24	17	27	30	1.97
22903400--22903443	22	2.0	22	82	8	54	29	2	2	65	1.16
22903526--22903571	17	2.6	18	83	13	60	41	6	2	50	1.40
22906533--22906673	42	3.3	44	76	5	153	29	25	17	27	1.98
22911416--22911469	22	2.4	23	84	3	65	40	1	1	55	1.21
22911434--22911474	12	3.6	12	80	9	50	41	2	0	56	1.13
22911602--22911645	19	2.6	16	80	16	52	47	2	4	45	1.35
22911610--22911653	19	2.4	18	81	7	52	50	4	4	40	1.43
22912571--22912601	13	2.4	13	100	0	62	67	0	6	25	1.14
22924843--22924875	14	2.4	14	85	15	50	42	0	0	57	0.98
22931613--22931642	9	3.2	9	90	9	51	70	0	20	10	1.16
22931613--22931643	10	3.2	10	95	4	55	70	0	19	9	1.14
22932351--22932399	25	2.0	25	83	0	62	38	0	16	44	1.48
22935497--22935534	15	2.5	15	91	0	58	57	0	7	34	1.28
22935571--22935611	18	2.2	19	87	12	59	17	4	4	73	1.19
22937115--22937157	22	2.0	22	85	0	59	11	9	27	51	1.69
22937393--22937492	44	2.3	42	89	3	146	26	27	18	29	1.98
22937236--22937492	42	6.1	42	77	10	200	26	25	19	29	1.98
22937393--22937512	42	2.8	42	83	7	127	26	25	19	29	1.98
22938195--22938253	26	2.3	26	96	0	109	42	3	15	38	1.63
22939357--22939396	12	3.2	12	85	3	53	35	2	47	15	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22939916--22939953	20	1.9	20	94	0	67	57	7	0	34	1.28
22940154--22940187	15	2.2	16	89	5	52	38	2	0	58	1.13
22940326--22940357	7	4.6	7	92	0	55	46	50	0	3	1.17
22940313--22940372	21	2.9	21	76	0	66	45	36	3	15	1.62
22940453--22940495	21	2.0	22	90	4	70	48	25	2	23	1.62
22940926--22941141	114	1.9	114	82	5	276	27	21	22	28	1.99
22940926--22941187	114	2.3	114	79	7	273	27	20	21	29	1.98
22941204--22942053	114	7.4	114	92	1	1362	25	20	18	35	1.96
22941204--22942053	229	3.7	228	92	0	1355	25	20	18	35	1.96
22943920--22944017	30	3.2	29	71	8	79	53	8	6	32	1.55
22946875--22946918	18	2.4	18	88	0	70	36	47	6	9	1.62
22949191--22949242	17	3.1	17	73	15	54	32	3	3	59	1.33
22950163--22950236	20	3.7	19	77	8	69	13	14	10	60	1.58
22950247--22950332	40	2.2	40	79	6	95	22	13	6	56	1.61
22950320--22950371	20	2.6	19	85	8	68	15	15	5	63	1.48
22950326--22950371	20	2.3	20	92	0	74	13	10	6	69	1.35
22950340--22950383	19	2.2	20	84	4	54	20	15	4	59	1.54
22951493--22951628	40	3.4	40	80	2	139	38	23	19	18	1.93
22951666--22951816	41	3.7	41	83	1	205	21	21	27	29	1.99
22952255--22952306	7	7.6	7	84	4	61	17	0	48	34	1.48
22952358--22952409	7	7.6	7	91	4	79	13	0	51	34	1.41
22952358--22952417	14	4.4	14	85	2	68	16	0	50	33	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22955202--22955253	5	10.4	5	100	0	104	61	0	0	38	0.96
22955419--22955482	22	3.0	21	79	6	65	21	1	7	68	1.23
22958869--22958912	23	2.0	22	86	4	61	31	0	13	54	1.39
22959069--22959246	43	4.2	43	87	1	232	28	16	29	25	1.97
22959094--22959246	43	3.6	43	90	1	236	25	16	31	26	1.97
22959347--22959437	43	2.1	42	86	6	121	24	19	28	27	1.99
22960793--22960840	22	2.2	22	88	7	71	22	2	6	68	1.23
22962045--22962096	17	2.9	17	78	16	52	46	0	28	25	1.53
22962195--22962254	30	2.0	30	83	3	75	41	0	38	20	1.52
22962396--22962437	21	2.0	21	86	9	59	42	2	33	21	1.66
22962473--22962518	9	5.1	9	91	0	74	32	10	10	45	1.74
22965425--22965602	40	4.4	40	72	13	139	25	15	26	32	1.96
22966346--22966378	17	2.0	17	88	5	50	33	0	21	45	1.52
22983383--22983440	15	4.0	15	75	8	57	15	10	41	32	1.81
22983486--22983523	20	2.0	20	90	10	62	18	0	5	76	0.97
22990522--22990594	33	2.2	33	85	9	96	38	0	6	54	1.27
22991150--22991207	29	2.0	29	80	12	66	29	1	27	41	1.66
22995355--22995500	5	29.2	5	100	0	292	39	0	0	60	0.97
22995922--22995961	16	2.5	15	84	11	53	52	0	22	25	1.47
22996299--22996374	21	3.6	21	80	5	73	18	22	23	35	1.96
22997400--22997430	12	2.6	12	94	0	53	9	25	38	25	1.86
23003173--23003205	17	1.9	17	88	11	50	30	21	0	48	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23010634--23010814	30	6.1	30	84	8	253	36	16	10	37	1.83
23010641--23010820	59	3.0	59	98	0	342	35	15	11	38	1.82
23010634--23010814	89	2.0	89	86	7	251	36	16	10	37	1.83
23027290--23027383	3	30.7	3	77	16	86	26	5	2	65	1.25
23027270--23027336	12	5.7	11	82	8	62	28	5	1	64	1.26
23027391--23027424	16	2.2	16	89	5	52	29	0	5	64	1.17
23034358--23034390	3	11.3	3	93	6	59	69	0	0	30	0.88
23035901--23036092	92	2.1	89	87	2	258	25	22	21	29	1.99
23035964--23036095	45	3.0	45	71	5	133	23	23	21	31	1.98
23035920--23036093	89	1.9	91	92	3	298	24	23	20	31	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141