genome.fa.s6.2.7.7.80.10.50.1000.57.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  42799318

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  57  of  141  ( 16820 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17106574--17106608	14	2.5	14	90	0	52	31	5	0	62	1.18
17106588--17106675	30	2.8	31	73	14	83	32	6	3	56	1.42
17110306--17110356	25	2.0	25	100	0	102	23	7	23	45	1.79
17114175--17114260	3	28.7	3	70	13	52	33	6	2	56	1.39
17114175--17114213	14	2.8	14	96	0	69	35	2	0	61	1.10
17114175--17114214	17	2.4	17	87	8	55	35	2	0	62	1.09
17114172--17114260	14	6.7	12	72	19	54	34	6	2	56	1.38
17115942--17115976	4	9.0	4	93	6	63	48	0	0	51	1.00
17118212--17118245	18	1.9	18	88	5	52	11	2	23	61	1.43
17120240--17120278	20	2.0	20	89	0	60	25	17	7	48	1.74
17124050--17124094	23	2.0	24	86	8	67	37	2	2	57	1.23
17125138--17125172	3	11.7	3	100	0	70	68	0	0	31	0.90
17125526--17125554	3	9.7	3	100	0	58	68	0	0	31	0.89
17134017--17134084	24	2.7	25	79	9	75	32	23	16	27	1.96
17134039--17134086	24	2.0	24	91	0	78	31	18	14	35	1.91
17138076--17138116	21	2.0	21	85	9	57	46	17	7	29	1.74
17140953--17141146	97	2.0	97	93	0	334	27	18	21	32	1.96
17151350--17152031	341	2.0	341	97	0	1301	40	13	14	32	1.84
17155785--17155873	28	3.2	28	79	3	90	42	12	21	23	1.86
17156961--17157192	56	4.1	56	98	0	446	45	9	21	22	1.81
17160341--17160480	59	2.4	58	83	7	158	48	12	12	27	1.76
17164469--17164508	19	2.1	19	100	0	80	32	10	27	30	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17164770--17164794	11	2.3	11	100	0	50	16	8	12	64	1.49
17166396--17166485	46	2.0	46	86	2	128	43	18	21	16	1.88
17167725--17168400	45	15.0	45	86	0	850	31	16	21	30	1.95
17168503--17168612	44	2.5	44	86	0	148	28	20	24	26	1.99
17175888--17175988	50	2.0	50	98	0	193	29	9	0	60	1.29
17176434--17176474	21	2.0	21	85	9	57	43	0	34	21	1.53
17176512--17176548	9	4.1	9	92	0	65	29	10	13	45	1.77
17176602--17176632	9	3.4	9	90	0	53	38	22	12	25	1.90
17176815--17176947	58	2.3	58	86	2	196	25	29	14	30	1.95
17181537--17181592	21	2.7	21	94	0	94	28	8	33	28	1.87
17185197--17185443	30	8.3	30	94	3	437	37	10	0	51	1.40
17185197--17185443	59	4.2	60	93	3	437	37	10	0	51	1.40
17185197--17185443	89	2.8	89	93	3	442	37	10	0	51	1.40
17187943--17188006	22	3.0	21	80	13	76	53	17	29	0	1.44
17187943--17188006	21	3.0	22	84	9	78	53	17	29	0	1.44
17194268--17194370	51	2.0	52	92	1	172	37	0	15	45	1.53
17194363--17194409	24	2.0	23	83	4	58	51	2	6	40	1.39
17195308--17195343	18	2.0	18	94	0	63	27	2	22	47	1.65
17198407--17198450	22	2.0	22	91	4	72	40	13	4	40	1.65
17199040--17199077	13	2.9	13	92	0	67	39	26	7	26	1.83
17199800--17199842	22	2.0	22	90	0	68	9	13	27	48	1.73
17199914--17200184	42	6.4	42	84	5	316	31	21	20	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17200604--17200643	12	3.3	12	92	0	53	2	37	17	42	1.63
17200628--17200762	21	6.3	20	70	10	72	0	39	21	38	1.59
17200616--17200726	33	3.4	33	91	0	186	0	38	20	40	1.53
17200649--17200708	12	5.2	12	75	18	65	0	36	20	43	1.52
17212175--17212528	115	3.1	115	95	0	602	32	20	18	29	1.96
17212967--17213046	21	3.8	21	70	6	54	47	27	1	23	1.59
17216983--17217127	41	3.5	41	79	3	148	27	28	22	21	1.99
17216973--17217123	82	1.8	82	81	2	187	27	29	21	21	1.99
17231892--17231947	21	2.6	21	80	2	67	35	10	32	21	1.88
17231924--17231959	18	2.1	18	89	5	56	44	5	30	19	1.73
17232391--17232424	17	2.0	17	88	0	50	20	8	11	58	1.59
17236904--17236946	21	2.1	20	82	4	50	48	0	4	46	1.22
17236904--17237102	68	3.2	59	72	19	154	50	4	3	41	1.38
17237004--17237059	25	2.2	27	78	12	64	50	5	1	42	1.35
17238731--17238770	20	2.0	21	85	5	55	57	7	7	27	1.53
17241077--17241105	15	1.9	15	100	0	58	31	13	27	27	1.94
17252206--17252238	8	4.2	8	84	7	50	3	21	0	75	0.93
17252209--17252239	15	2.1	15	93	0	53	3	19	0	77	0.90
17255920--17256111	42	4.6	42	80	10	205	22	19	18	39	1.93
17261863--17261905	19	2.3	19	80	4	52	9	16	0	74	1.06
17267172--17267369	41	4.8	41	83	3	220	29	18	28	23	1.98
17276676--17276716	17	2.4	17	83	0	55	46	0	2	51	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17276676--17276730	17	3.2	18	77	12	53	49	0	1	49	1.11
17276726--17276766	13	2.8	16	75	21	52	53	0	0	46	1.00
17276703--17276753	26	2.0	27	84	7	70	52	0	0	47	1.00
17276720--17276771	16	3.4	16	74	17	56	51	0	0	48	1.00
17277242--17277364	65	1.9	65	93	0	210	36	6	1	55	1.36
17282986--17283340	42	8.4	42	85	5	378	31	20	21	25	1.98
17282986--17283338	127	2.8	127	83	6	410	31	20	21	25	1.98
17282986--17283339	85	4.2	85	82	6	373	31	20	21	25	1.98
17283695--17283839	78	1.9	78	86	2	211	13	25	17	43	1.86
17285867--17285957	45	2.0	45	86	0	128	38	8	29	23	1.85
17288089--17288132	22	2.0	22	90	0	70	54	0	0	45	0.99
17288086--17288247	72	2.2	75	80	9	172	48	2	0	48	1.19
17288157--17288187	15	2.0	16	93	6	55	61	0	0	38	0.96
17288225--17288281	15	3.5	15	71	17	51	49	1	1	47	1.22
17294373--17294410	19	2.1	18	85	14	51	44	5	34	15	1.69
17295302--17295360	21	2.6	24	76	15	70	38	25	23	11	1.89
17295481--17295606	24	5.2	24	75	3	119	23	24	34	16	1.95
17295479--17295636	48	3.3	47	78	7	147	25	24	35	15	1.94
17300028--17300379	126	2.8	126	89	2	539	28	15	21	33	1.94
17303519--17304241	23	29.4	23	73	22	500	28	0	25	45	1.60
17303540--17304248	29	28.4	29	73	22	196	27	0	26	44	1.60
17303570--17303610	22	1.9	22	95	5	75	24	0	31	43	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17303512--17304241	102	7.4	100	73	19	490	28	0	26	44	1.60
17303519--17304218	73	9.5	73	77	15	524	27	1	26	45	1.60
17303519--17304329	125	6.4	125	79	12	837	27	0	26	45	1.60
17304062--17304102	21	2.0	21	100	0	82	24	0	31	43	1.54
17303891--17304335	102	4.4	100	81	11	336	27	1	26	44	1.61
17304211--17304284	36	2.1	36	94	0	130	25	0	27	47	1.52
17304247--17304333	23	3.5	23	70	17	75	25	0	26	48	1.52
17304083--17304313	29	8.4	29	73	20	128	27	0	26	45	1.59
17304183--17304313	59	2.2	58	88	8	185	25	0	27	46	1.53
17304209--17304314	36	3.2	33	79	19	121	25	0	28	46	1.53
17304328--17304397	26	2.7	26	91	2	115	37	14	1	47	1.53
17305539--17305563	7	3.6	7	100	0	50	60	12	0	28	1.32
17306745--17306797	22	2.4	22	93	3	88	43	0	30	26	1.55
17306780--17306814	10	3.2	11	88	12	54	45	0	37	17	1.48
17312426--17312542	60	2.0	60	100	0	234	31	11	23	32	1.91
17313114--17313309	102	1.9	102	89	2	304	35	9	16	38	1.81
17319382--17319508	51	2.5	50	82	7	141	24	17	26	31	1.97
17319329--17319521	102	1.9	101	86	3	271	24	17	27	30	1.97
17319517--17319615	46	2.2	43	81	12	110	23	18	26	32	1.97
17319742--17319774	16	2.1	15	94	5	57	54	12	12	21	1.69
17322818--17322894	37	2.1	37	100	0	154	33	14	5	46	1.66
17332538--17332567	13	2.3	13	94	0	51	40	3	20	36	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17332529--17332657	54	2.4	52	82	7	136	44	3	17	34	1.67
17332668--17332692	13	1.9	13	100	0	50	44	8	16	32	1.76
17351674--17351705	17	1.9	17	93	6	57	65	15	6	12	1.44
17352335--17352395	19	3.3	18	68	8	59	42	9	3	44	1.54
17352324--17352449	45	3.0	41	88	7	159	42	14	2	41	1.58
17352380--17352451	19	3.2	23	63	31	55	40	16	0	43	1.48
17352365--17352453	45	2.0	45	97	0	169	39	16	0	43	1.48
17352459--17352508	15	3.1	15	85	8	64	42	0	14	44	1.44
17352477--17352514	18	2.1	18	90	0	58	47	0	13	39	1.42
17353172--17353234	27	2.4	27	94	2	110	46	0	11	42	1.39

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141