genome.fa.s6.2.7.7.80.10.50.1000.55.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  42799318

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  55  of  141  ( 16820 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16467600--16467654	21	2.7	21	94	5	96	38	12	9	40	1.75
16468349--16468892	44	12.4	44	77	6	487	29	26	15	28	1.96
16468351--16468888	132	4.1	132	93	1	873	29	26	15	28	1.96
16476244--16476297	22	2.4	22	84	12	65	66	3	1	27	1.19
16476245--16476309	26	2.5	26	84	0	85	66	3	1	29	1.16
16480173--16480202	15	2.0	15	93	0	51	40	3	6	50	1.45
16487794--16487835	21	2.0	20	86	4	57	59	4	4	30	1.39
16493682--16493798	38	3.1	38	87	2	155	37	29	19	12	1.89
16493703--16493774	22	3.5	22	65	27	68	36	30	22	11	1.89
16495260--16495309	3	16.7	3	91	0	82	66	30	0	4	1.10
16496930--16496966	17	2.2	17	90	9	58	16	5	2	75	1.10
16496910--16496968	30	2.0	30	83	6	75	16	6	6	69	1.33
16498117--16498536	137	3.1	137	82	6	537	40	8	5	46	1.57
16501920--16501971	24	2.2	24	89	0	77	36	3	9	50	1.54
16506281--16506325	24	1.9	23	90	0	63	37	4	6	51	1.49
16509642--16509832	45	4.2	45	91	1	294	23	26	21	27	1.99
16516280--16516369	41	2.2	40	84	9	112	34	5	1	58	1.28
16516271--16516366	38	2.5	35	78	16	102	34	6	1	58	1.30
16521052--16521089	12	3.2	12	88	7	51	28	2	5	63	1.30
16521451--16521512	28	2.2	27	80	11	72	35	3	0	61	1.12
16526425--16526513	46	2.0	45	88	2	133	47	19	19	14	1.83
16527808--16529011	44	27.4	44	88	1	1640	31	19	26	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16529014--16529223	89	2.4	87	86	3	303	31	20	23	24	1.98
16530667--16530704	12	3.2	12	88	7	51	28	2	5	63	1.30
16531066--16531127	28	2.2	27	80	11	72	35	3	0	61	1.12
16539671--16539709	17	2.1	20	86	13	57	46	5	17	30	1.70
16541777--16541830	22	2.4	23	75	3	56	18	12	0	68	1.21
16550892--16550963	32	2.2	32	92	0	117	38	4	30	26	1.75
16550892--16550954	16	3.9	16	87	0	99	39	3	30	26	1.72
16551130--16551713	120	5.0	120	84	9	820	51	4	1	42	1.30
16551409--16551625	102	2.2	101	92	4	359	51	5	1	42	1.32
16551288--16551713	220	1.9	222	93	2	734	51	4	1	42	1.30
16551507--16551691	59	3.1	59	71	16	182	50	5	1	42	1.32
16553099--16553202	49	2.1	49	92	3	174	51	9	5	32	1.58
16553681--16553948	134	2.0	129	93	4	464	35	22	14	26	1.93
16555677--16555713	16	2.3	16	100	0	74	72	0	0	27	0.84
16555781--16555953	73	2.3	75	97	2	323	52	8	6	31	1.59
16557089--16557157	21	3.1	21	82	15	93	57	18	5	17	1.59
16557079--16557166	25	3.6	25	85	13	121	56	20	7	14	1.63
16561506--16561581	26	2.9	26	82	3	91	39	9	15	35	1.80
16567502--16567557	10	5.7	10	73	12	53	30	0	3	66	1.09
16567498--16567557	19	3.1	19	86	11	86	28	0	3	68	1.05
16568298--16568337	20	2.0	20	85	9	55	40	12	12	35	1.81
16569395--16569445	23	2.2	23	89	0	75	43	19	9	27	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16572019--16572160	32	4.4	32	82	3	169	45	10	8	35	1.69
16574480--16574524	20	2.2	20	84	7	56	33	0	31	35	1.58
16580291--16580928	230	2.8	226	81	6	644	30	21	21	26	1.98
16580943--16581291	190	1.8	191	81	6	440	31	20	22	26	1.98
16581771--16581807	14	2.4	16	78	17	51	16	0	35	48	1.46
16581900--16581933	15	2.3	15	89	0	50	8	0	35	55	1.31
16583645--16583680	16	2.4	15	90	9	56	11	8	16	63	1.49
16584099--16584134	15	2.5	15	90	4	56	11	16	8	63	1.49
16584780--16584835	9	6.8	9	73	19	50	48	14	0	37	1.44
16584735--16584835	41	2.5	40	84	7	125	49	11	0	37	1.46
16584789--16584838	16	3.2	16	88	2	75	48	14	0	38	1.44
16585036--16585109	9	8.2	9	84	0	85	54	10	0	35	1.36
16585036--16585109	18	4.1	18	85	0	94	54	10	0	35	1.36
16585035--16585109	27	2.8	27	91	0	123	54	10	0	34	1.35
16585054--16585125	36	2.0	36	83	2	92	55	12	0	31	1.37
16587369--16587438	21	3.3	21	87	0	68	37	20	38	4	1.72
16587384--16587440	21	2.7	21	91	0	87	36	17	42	3	1.67
16587823--16588153	126	2.6	127	79	3	371	32	21	19	26	1.97
16587823--16588158	42	8.0	42	83	2	323	32	20	19	27	1.97
16589858--16589887	5	5.8	5	92	7	51	20	0	0	80	0.72
16594370--16594426	29	2.0	29	100	0	114	35	17	12	35	1.87
16595842--16595885	18	2.4	18	92	0	70	40	40	2	15	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16599057--16599106	16	3.2	16	72	13	50	48	2	2	48	1.24
16601585--16602369	261	3.0	261	83	6	970	31	13	17	36	1.89
16603274--16603402	64	2.0	63	93	1	222	25	24	8	41	1.83
16605563--16605615	27	2.0	27	81	7	63	60	0	1	37	1.08
16608127--16608179	21	2.4	22	78	9	54	52	0	35	11	1.37
16608130--16608170	21	2.0	21	85	0	55	56	0	36	7	1.27
16608285--16608833	275	2.0	269	88	3	814	42	6	8	42	1.61
16611201--16611227	6	4.5	6	100	0	54	0	37	29	33	1.58
16615016--16615058	13	3.4	12	81	9	50	79	0	9	11	0.95
16615739--16615786	11	4.4	11	75	0	51	12	12	14	60	1.59
16615730--16615772	22	2.0	22	90	0	68	9	11	18	60	1.57
16615736--16615786	22	2.3	22	82	0	57	13	11	13	60	1.59
16620474--16620566	37	2.5	37	85	1	116	35	31	15	18	1.91
16624718--16624781	27	2.4	27	84	5	76	21	25	17	35	1.95
16624803--16624893	26	3.5	26	82	8	112	35	20	12	31	1.90
16625040--16625092	23	2.3	23	86	0	70	24	20	26	28	1.99
16629609--16629694	37	2.3	37	93	0	145	44	19	6	29	1.77
16640211--16640332	44	2.8	43	80	5	129	31	22	16	29	1.95
16640323--16641961	128	12.8	128	89	0	2391	25	23	19	31	1.98
16641915--16642043	44	2.9	44	85	4	154	24	24	21	30	1.99
16641962--16642048	44	2.0	44	97	0	165	21	24	21	32	1.98
16644172--16644283	6	19.7	6	79	15	87	11	3	13	71	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16644178--16644243	31	2.1	32	85	5	89	12	4	13	69	1.33
16645520--16645593	37	2.0	38	86	2	105	52	4	10	32	1.55
16645983--16646016	3	11.0	3	87	6	50	61	0	2	35	1.11
16647659--16647774	41	2.7	43	73	7	121	31	21	16	30	1.95
16647654--16647832	44	4.2	44	71	13	149	30	22	15	31	1.95
16647825--16649060	129	9.6	129	90	2	1925	24	23	19	32	1.98
16650613--16651115	129	3.9	129	90	1	787	24	23	19	32	1.98
16653213--16653268	22	2.5	23	77	11	62	14	8	12	64	1.50
16657862--16657907	3	15.0	3	86	4	65	60	0	4	34	1.16
16676967--16677126	80	2.0	80	97	0	302	29	19	23	28	1.98
16681416--16681505	46	2.0	46	95	4	164	33	20	22	24	1.97
16685642--16685710	27	2.6	27	83	4	86	27	23	13	36	1.92
16688591--16688628	10	3.7	10	89	3	58	71	0	28	0	0.87
16688788--16688921	39	3.2	38	77	20	119	33	3	11	50	1.57
16691486--16691674	95	2.0	94	83	10	242	32	12	7	47	1.69
16691576--16692051	159	3.1	152	76	13	518	30	10	7	51	1.65
16692303--16692446	38	4.0	37	69	21	108	0	35	0	64	0.94
16692327--16692381	21	2.6	21	79	2	65	0	29	0	70	0.87
16692352--16692440	28	3.4	28	73	18	86	0	37	0	62	0.95
16692396--16692431	14	2.6	14	90	0	54	0	27	0	72	0.85
16692420--16692448	14	2.0	15	93	6	51	0	51	0	48	1.00
16696939--16697053	51	2.3	51	96	0	212	32	13	25	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16698439--16698605	43	3.9	43	79	7	169	33	26	14	24	1.95
16699212--16699238	13	2.1	13	100	0	54	48	22	0	29	1.51
16708084--16708125	21	1.9	23	85	9	61	57	11	7	23	1.59
16709627--16710039	125	3.3	125	92	0	655	32	16	20	30	1.95
16710995--16711112	49	2.4	49	98	0	227	42	9	2	45	1.49
16711235--16711292	21	2.8	21	79	12	57	6	17	46	29	1.74
16711533--16711575	18	2.4	18	88	0	59	44	9	27	18	1.80
16713431--16713493	11	5.7	12	75	17	57	47	1	26	23	1.61
16713433--16713498	22	2.9	22	78	13	71	48	1	28	21	1.59
16713431--16713494	33	1.9	33	93	6	112	48	1	26	23	1.60

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141