genome.fa.s6.2.7.7.80.10.50.1000.140.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  42799318

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  140  of  141  ( 16820 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42356818--42356862	20	2.2	21	92	4	74	15	2	2	80	0.92
42356817--42356853	14	2.8	13	92	8	65	13	0	2	83	0.74
42358676--42358870	50	3.9	50	85	3	259	28	28	16	26	1.97
42359116--42359169	27	2.0	27	85	0	72	38	14	7	38	1.75
42364501--42364808	50	6.5	46	78	11	202	27	17	30	24	1.97
42364684--42364817	50	2.7	50	97	0	250	26	17	32	24	1.97
42369671--42369700	14	2.1	14	93	0	51	56	16	0	26	1.40
42380818--42381083	28	9.5	28	95	0	453	34	26	11	27	1.91
42385941--42386000	27	2.3	26	85	2	75	35	20	23	21	1.96
42385968--42386109	67	2.1	67	88	5	203	30	22	28	18	1.97
42386039--42386090	27	2.0	26	84	3	68	34	21	26	17	1.95
42393069--42393196	29	4.5	28	88	2	175	32	25	12	28	1.92
42393068--42393196	57	2.3	57	87	2	188	32	26	12	28	1.92
42401639--42401735	28	3.5	28	79	8	108	34	26	9	29	1.88
42415003--42415077	37	2.0	37	94	0	132	17	25	12	45	1.82
42415833--42415862	14	2.1	15	93	6	53	30	6	20	43	1.77
42418152--42418189	19	2.0	19	94	0	67	10	2	2	84	0.83
42419217--42419264	22	2.2	22	84	0	60	43	16	6	33	1.73
42419261--42419285	7	3.6	7	100	0	50	40	0	0	60	0.97
42428159--42428222	32	2.0	32	96	0	119	40	6	10	42	1.65
42428661--42428811	40	3.7	40	83	6	180	24	22	21	31	1.99
42428661--42428787	40	3.1	40	85	4	182	25	21	21	32	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42441247--42441657	47	8.7	47	97	0	750	29	30	8	32	1.86
42442917--42443023	53	2.0	53	94	0	187	28	17	13	41	1.87
42455240--42455264	13	1.9	13	100	0	50	8	32	36	24	1.84
42457223--42457247	13	1.9	13	100	0	50	8	32	36	24	1.84
42466902--42467001	42	2.4	41	77	9	114	32	28	17	23	1.96
42469081--42469112	8	4.0	8	91	0	55	46	25	25	3	1.67
42469529--42469667	27	5.2	26	84	6	161	17	23	21	36	1.95
42475476--42475686	40	5.3	40	90	2	311	27	22	26	23	2.00
42488979--42489013	16	2.2	16	90	10	54	22	25	2	48	1.64
42491766--42491863	34	2.9	34	73	8	94	31	21	22	24	1.98
42505407--42505435	10	2.9	10	100	0	58	51	17	0	31	1.45
42509021--42509131	27	4.1	27	88	5	154	37	22	24	15	1.93
42510569--42510644	24	3.2	24	92	0	125	19	42	3	34	1.70
42516189--42516252	30	2.2	29	94	2	110	26	17	21	34	1.95
42525692--42525903	46	4.6	46	97	1	390	30	28	20	20	1.98
42528105--42528272	46	3.6	45	78	12	180	27	19	29	23	1.98
42534349--42534523	46	3.8	46	96	0	314	29	29	21	20	1.98
42536417--42536503	45	1.9	45	92	0	147	29	27	20	21	1.98
42537253--42537357	25	4.2	25	82	4	122	47	13	12	26	1.78
42537256--42537354	50	2.0	50	90	4	155	46	14	13	26	1.80
42545303--42545362	27	2.3	27	85	2	77	21	23	20	35	1.96
42547484--42547552	35	2.0	35	94	0	120	18	34	18	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42547530--42547593	33	2.0	32	84	3	83	20	23	20	35	1.96
42547555--42547614	27	2.3	26	85	2	75	21	23	20	35	1.96
42554548--42554810	40	6.6	39	86	4	278	25	27	21	25	1.99
42554548--42554810	120	2.2	119	82	4	307	25	27	21	25	1.99
42554742--42554819	40	1.9	41	82	10	97	26	28	20	24	1.99
42562494--42562665	40	4.3	40	87	2	213	25	28	21	24	1.99
42562494--42562718	80	2.8	79	80	7	231	25	28	21	24	1.99
42562650--42562727	40	1.9	41	82	10	97	26	28	20	24	1.99
42577428--42577522	48	2.0	48	97	0	181	25	24	29	21	1.99
42592509--42592781	39	6.9	39	85	2	170	30	27	22	20	1.98
42592538--42592781	39	6.2	39	86	0	308	29	26	22	21	1.99
42592558--42592779	79	2.8	78	87	1	336	28	27	23	21	1.99
42592534--42592763	118	1.9	118	89	0	352	29	26	23	20	1.99
42595997--42596174	27	6.6	27	83	3	205	26	15	28	29	1.96
42595998--42596153	82	1.9	81	88	3	233	26	15	28	29	1.96
42595994--42596174	82	2.2	81	83	2	229	27	15	27	29	1.96
42600063--42600224	43	3.8	43	76	14	147	33	25	16	24	1.96
42607502--42607700	42	4.7	42	82	9	226	33	25	17	23	1.96
42612028--42612241	55	4.0	54	81	4	225	21	23	17	37	1.94
42612030--42612246	54	4.0	54	81	2	229	21	23	17	37	1.93
42612228--42612349	47	2.6	47	96	0	217	25	23	13	36	1.92
42612321--42612440	47	2.5	48	75	9	120	23	21	20	34	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42620848--42621119	65	4.2	65	98	0	508	41	18	15	25	1.89
42621121--42621178	26	2.2	26	81	3	71	24	22	18	34	1.96
42622124--42622218	48	2.0	48	100	0	190	29	16	18	34	1.94
42622424--42622763	170	2.0	170	99	0	671	37	7	30	23	1.84
42629989--42630119	65	2.0	65	96	0	244	42	18	15	23	1.88
42630121--42630178	26	2.2	26	81	3	71	24	22	18	34	1.96
42633772--42633819	20	2.4	20	71	0	51	29	20	29	20	1.98
42636803--42636999	55	3.6	54	84	4	254	20	23	19	36	1.95
42636978--42637099	47	2.6	47	89	0	163	23	23	14	37	1.92
42637239--42637322	44	1.9	44	80	9	100	26	22	10	40	1.86
42640279--42640307	11	2.7	11	94	5	51	6	37	0	55	1.27
42642095--42642252	43	3.8	41	78	12	126	29	28	16	25	1.97
42642132--42642395	45	6.0	45	79	6	258	32	27	17	23	1.96
42642216--42642395	90	2.0	89	91	1	288	33	26	17	22	1.96
42644120--42644337	47	4.6	47	96	0	382	28	18	30	22	1.97
42644029--42644337	94	3.3	94	86	6	391	28	18	31	22	1.97
42650273--42650536	40	6.7	40	89	5	360	25	27	21	25	1.99
42652695--42652773	40	2.0	40	97	0	149	36	24	5	34	1.77
42655344--42655852	256	2.0	256	98	0	991	34	21	22	21	1.97
42658599--42658862	40	6.7	40	89	5	360	25	27	21	25	1.99
42671165--42671271	27	3.9	27	85	9	137	17	24	22	35	1.95
42671165--42671277	54	2.1	54	86	3	156	16	23	23	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42674815--42674912	51	1.9	51	83	4	126	32	25	17	24	1.97
42674884--42675039	43	3.7	43	79	1	152	33	27	17	21	1.96
42682959--42683016	29	2.0	30	93	3	100	39	12	25	22	1.89
42690358--42690394	20	1.9	20	88	5	58	40	0	8	51	1.32
42698545--42698605	30	2.0	30	87	0	86	39	4	24	31	1.77
42699985--42700168	39	4.7	38	85	5	174	27	32	21	19	1.97
42703660--42703698	4	10.2	4	94	5	64	0	20	0	79	0.73
42705619--42705791	46	3.7	46	77	6	188	21	20	30	27	1.98
42714247--42714300	27	2.0	27	85	0	72	38	9	12	38	1.76
42714546--42714741	99	2.0	99	91	0	320	25	19	27	27	1.99
42714547--42714727	49	3.7	49	85	1	254	25	19	27	28	1.99
42720069--42720101	12	2.6	13	85	9	50	9	45	0	45	1.35
42721169--42721233	28	2.3	28	91	0	103	32	27	9	30	1.88
42721339--42721428	28	3.2	27	82	7	110	20	23	23	33	1.97
42721349--42721439	27	3.2	28	82	4	94	21	25	19	32	1.97
42721339--42721453	55	2.1	56	82	8	137	19	23	21	35	1.96
42721892--42721930	19	2.1	19	85	0	51	15	7	5	71	1.26
42725247--42725447	99	2.0	99	84	1	258	28	26	18	26	1.98
42725434--42725591	67	2.4	64	78	12	167	27	28	15	29	1.96
42726251--42726311	30	2.0	30	84	6	79	29	22	6	40	1.79
42729261--42729622	46	7.7	48	76	13	283	23	29	19	27	1.98
42729263--42729625	94	3.9	92	80	11	307	23	28	19	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42735622--42736079	229	2.0	229	99	0	898	29	13	17	39	1.88
42736878--42736974	30	3.2	30	75	2	106	28	26	15	28	1.96
42740579--42740641	21	3.0	21	85	2	81	31	3	31	33	1.74
42743116--42743153	10	3.8	10	83	13	51	28	31	18	21	1.97
42743115--42743152	20	1.9	20	94	0	67	28	34	18	18	1.95
42743116--42743176	20	3.0	20	83	9	63	29	27	14	27	1.95
42743126--42743172	10	4.6	10	80	15	51	31	27	14	25	1.95
42744618--42744683	33	2.0	33	96	0	123	15	22	15	46	1.82
42752476--42752503	10	2.8	10	100	0	56	17	0	7	75	1.03
42753945--42754009	20	3.3	19	73	16	51	38	16	21	23	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141