genome.fa.s6.2.7.7.80.10.50.1000.121.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  42799318

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  121  of  141  ( 16820 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35903867--35904030	87	1.9	86	82	6	206	32	10	17	39	1.85
35904054--35904078	3	8.3	3	100	0	50	68	0	0	32	0.90
35904918--35904986	29	2.3	31	82	5	88	27	15	18	37	1.92
35905176--35905215	21	1.9	21	85	10	55	65	0	5	30	1.14
35905176--35905215	20	1.9	19	85	14	53	65	0	5	30	1.14
35905178--35905273	31	3.0	31	86	10	124	60	0	4	35	1.16
35905210--35905246	19	1.9	19	89	10	58	62	0	5	32	1.18
35905500--35905561	29	2.1	31	93	6	110	29	11	17	41	1.84
35905477--35905681	91	2.2	91	86	2	286	33	12	12	41	1.79
35920397--35920462	27	2.4	27	82	9	73	22	30	13	33	1.93
35924668--35924984	45	6.9	45	86	7	404	26	17	16	39	1.91
35924779--35924815	18	2.1	18	100	0	74	27	5	29	37	1.79
35928626--35928657	16	2.0	16	93	0	55	25	15	0	59	1.36
35928878--35929101	101	2.2	102	77	7	233	30	27	16	25	1.96
35931842--35931923	42	2.0	42	85	4	112	30	24	14	30	1.95
35944454--35944718	69	3.8	69	79	4	293	21	24	15	38	1.93
35944454--35944720	138	1.9	138	84	4	351	21	24	16	37	1.93
35944445--35944759	69	4.6	69	77	5	269	22	23	17	37	1.94
35950797--35950835	19	2.1	19	95	0	69	33	28	17	20	1.96
35963279--35963309	15	2.1	14	94	5	53	61	0	0	38	0.96
35963731--35963788	22	2.6	22	84	7	73	43	17	3	36	1.66
35963744--35963847	21	5.1	19	86	9	100	39	15	7	37	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35963778--35963842	21	3.1	21	100	0	130	38	13	9	38	1.77
35963767--35963862	21	4.8	19	89	5	120	36	13	11	38	1.81
35964138--35964427	44	6.7	42	73	12	171	27	22	19	30	1.98
35964437--35965888	132	11.0	132	92	0	2357	25	23	19	31	1.98
35964466--35965838	44	31.2	44	62	9	287	25	23	19	31	1.98
35972083--35972187	51	2.0	51	81	5	122	55	6	6	31	1.52
35972454--35972493	3	13.3	3	84	10	55	67	0	0	32	0.91
35972456--35972507	12	4.1	12	81	16	52	69	1	0	28	0.99
35972710--35972748	19	2.0	21	85	10	55	69	5	10	15	1.34
35972947--35973001	19	2.7	21	88	11	96	36	14	10	38	1.81
35972950--35973012	19	3.3	18	86	8	56	36	15	12	34	1.86
35975378--35975480	20	5.2	20	69	4	82	13	31	19	35	1.91
35975354--35975582	40	5.7	40	81	4	228	15	30	19	34	1.92
35980147--35980194	21	2.3	21	79	13	55	35	4	12	47	1.60
35982636--35982693	22	2.6	22	84	7	73	43	17	3	36	1.66
35982649--35982752	21	5.1	19	86	9	100	39	15	7	37	1.76
35982683--35982747	21	3.1	21	100	0	130	38	13	9	38	1.77
35982672--35982767	21	4.8	19	89	5	120	36	13	11	38	1.81
35983043--35983332	44	6.7	42	73	12	171	27	22	19	30	1.98
35983342--35984363	132	7.7	132	98	0	1920	25	23	18	31	1.98
35985143--35985245	20	5.2	20	69	4	82	13	31	19	35	1.91
35985119--35985347	40	5.7	40	81	4	228	15	30	19	34	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35989912--35989959	21	2.3	21	79	13	55	35	4	12	47	1.60
35996966--35997046	40	2.0	40	97	0	153	33	12	22	32	1.91
35998000--35998038	10	3.6	11	86	13	55	20	35	0	43	1.52
35998015--35998125	51	2.2	51	95	1	197	30	25	1	42	1.65
36000252--36000276	7	3.6	7	100	0	50	28	0	12	60	1.32
36000925--36000959	18	1.9	18	94	0	61	25	31	8	34	1.86
36001436--36001503	25	2.7	25	100	0	136	44	0	14	41	1.45
36001538--36002747	29	43.9	29	83	14	1586	45	26	0	27	1.55
36002673--36002775	29	3.1	35	83	15	107	42	33	0	24	1.55
36001696--36002747	29	37.4	29	87	10	1589	45	27	0	27	1.54
36006864--36006900	19	1.9	19	88	0	56	40	0	0	59	0.97
36016235--36016266	16	2.1	16	88	11	50	0	40	0	59	0.97
36016508--36016533	8	3.2	8	100	0	52	38	11	23	26	1.89
36029616--36029662	21	2.2	21	80	0	58	31	21	29	17	1.96
36030345--36030393	24	2.0	24	100	0	98	28	34	8	28	1.86
36033099--36033218	27	4.4	27	73	9	95	25	25	17	32	1.97
36033278--36033348	31	2.2	32	82	7	83	15	29	28	26	1.96
36033443--36033490	18	2.6	18	83	6	60	50	2	4	43	1.33
36035088--36035120	5	6.6	5	90	10	50	15	3	0	81	0.80
36038096--36038148	11	4.6	11	76	15	54	60	5	5	28	1.42
36039266--36039319	25	2.3	23	81	12	56	3	9	22	64	1.38
36039855--36040066	50	4.2	50	74	3	203	22	16	25	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36039893--36040099	100	2.1	100	92	0	342	21	18	27	33	1.96
36039941--36040097	50	3.1	50	68	3	145	21	19	26	32	1.97
36040193--36040599	44	8.8	44	69	18	238	28	19	19	32	1.97
36040153--36040570	142	2.9	142	94	0	719	28	19	18	33	1.95
36042902--36042935	15	2.4	14	90	5	50	11	0	5	82	0.83
36042892--36042933	21	2.0	22	85	4	59	11	4	4	78	1.06
36048419--36048472	25	2.2	24	81	12	58	3	7	22	66	1.33
36052724--36052756	17	1.9	18	88	11	52	42	12	0	45	1.41
36055546--36055829	48	5.9	48	95	0	505	28	25	18	27	1.98
36060324--36060412	37	2.4	37	81	5	108	25	15	20	38	1.92
36074047--36074086	3	13.3	3	100	0	80	32	0	0	67	0.91
36078703--36078737	16	2.3	15	90	5	52	0	17	0	82	0.66
36081736--36081788	23	2.3	23	93	0	97	20	20	26	32	1.98
36091544--36091825	75	3.8	74	77	4	228	28	15	18	37	1.91
36091544--36091825	37	7.6	37	79	3	226	28	15	18	37	1.91
36091544--36091825	112	2.5	112	85	1	361	28	15	18	37	1.91
36092414--36092507	23	4.0	24	73	8	86	29	11	17	41	1.84
36092414--36092565	71	2.2	70	83	8	193	31	9	17	41	1.82
36092414--36092566	23	6.5	23	69	13	71	32	9	16	41	1.82
36098907--36099019	43	2.6	42	82	10	140	26	19	27	26	1.99
36100011--36100289	47	5.9	48	75	12	165	26	15	18	40	1.90
36100011--36100107	24	4.1	24	78	4	90	22	16	17	43	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36100068--36100419	70	5.0	70	95	1	582	27	13	18	40	1.88
36100068--36100386	47	6.8	47	73	5	245	26	14	18	40	1.88
36100373--36100455	23	3.5	23	75	6	69	33	12	18	36	1.87
36106914--36106949	18	2.1	16	90	10	54	33	5	0	61	1.19
36106901--36106966	28	2.4	27	78	12	71	36	6	1	56	1.34
36106998--36107051	28	2.0	27	82	17	67	35	11	1	51	1.48
36110579--36111495	306	3.0	306	98	0	1744	27	18	30	23	1.97
36124719--36124752	14	2.4	14	90	0	50	50	0	8	41	1.34
36125742--36125768	7	3.9	7	100	0	54	14	14	29	40	1.86
36127610--36127638	15	1.9	15	100	0	58	17	20	20	41	1.90
36138183--36138211	12	2.3	13	94	5	51	65	6	6	20	1.40
36148441--36148505	31	2.1	31	100	0	130	35	18	26	20	1.95
36149582--36149618	14	2.9	12	85	14	56	18	8	0	72	1.08
36149585--36149618	13	2.5	13	95	4	59	14	5	0	79	0.91
36153758--36153792	12	2.9	12	84	16	54	2	22	0	74	0.95
36153758--36153817	24	2.5	23	81	7	75	6	18	0	75	1.02
36153746--36153791	19	2.3	20	78	14	51	4	21	2	71	1.14
36156927--36157003	30	2.6	30	87	0	100	12	24	1	61	1.40
36157086--36157127	14	3.1	14	80	16	52	0	28	9	61	1.27
36162842--36163016	40	4.4	40	90	0	260	28	28	20	22	1.98
36167083--36167129	22	2.1	22	96	0	85	23	40	4	31	1.74
36173497--36173550	24	2.2	25	78	15	60	11	22	3	62	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36175802--36175828	14	1.9	14	100	0	54	14	7	7	70	1.32
36177211--36177640	215	2.0	215	99	0	851	21	18	19	40	1.92
36178331--36178381	12	3.9	12	76	18	57	74	1	9	13	1.15
36178342--36178378	16	2.4	15	86	8	56	81	2	8	8	0.97
36179552--36179608	24	2.4	23	73	2	60	22	3	31	42	1.71
36179507--36179653	45	3.2	45	64	17	122	31	4	29	34	1.76
36179506--36179701	92	2.1	92	100	0	392	28	4	30	36	1.77
36179680--36179742	21	2.9	22	85	2	83	31	3	31	33	1.74
36181913--36182013	52	1.9	52	93	0	175	32	20	18	27	1.96
36191183--36191209	14	1.9	14	100	0	54	88	3	7	0	0.61

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141