genome.fa.s6.2.7.7.80.10.50.1000.128.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  42799318

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  128  of  141  ( 16820 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38347602--38347746	31	4.7	31	76	10	111	30	8	17	44	1.78
38349544--38349723	41	4.4	41	92	0	279	20	27	21	30	1.98
38349544--38349751	41	5.1	41	86	2	247	22	26	20	30	1.98
38349578--38349751	82	2.1	82	90	2	278	21	27	20	29	1.98
38357032--38357202	41	4.2	41	90	0	252	22	27	19	30	1.98
38357064--38357230	41	4.1	41	83	6	212	22	27	20	29	1.98
38357053--38357230	82	2.2	82	88	4	261	23	27	19	29	1.98
38361269--38361300	16	2.0	16	100	0	64	50	25	0	25	1.50
38368046--38368082	20	1.9	19	89	10	58	64	0	0	35	0.94
38369740--38370259	282	1.9	278	80	6	618	30	11	10	47	1.73
38371742--38371785	6	7.2	6	86	2	61	0	59	0	40	0.98
38371742--38371785	18	2.4	18	92	3	70	0	59	0	40	0.98
38371845--38371903	25	2.4	26	74	23	65	3	33	3	59	1.31
38375272--38375324	21	2.5	21	90	0	79	30	35	9	24	1.87
38376591--38376629	17	2.4	16	86	4	60	51	0	0	48	1.00
38379871--38379919	19	2.6	19	93	0	80	48	14	14	22	1.79
38393096--38393136	18	2.3	18	87	8	57	63	4	2	29	1.28
38393607--38393666	25	2.4	24	83	8	75	26	0	5	68	1.10
38395173--38395213	14	3.0	13	82	10	55	56	0	0	43	0.99
38395193--38395247	20	2.4	23	74	20	62	45	3	1	49	1.30
38395202--38395241	20	1.9	21	90	10	64	47	5	2	45	1.38
38405549--38405613	29	2.2	30	86	5	98	60	1	1	36	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38408218--38408346	31	4.2	31	66	11	77	35	19	21	23	1.96
38411148--38411200	5	10.2	5	76	8	52	20	3	0	75	0.96
38413382--38413468	25	3.5	25	90	3	131	32	19	29	18	1.96
38423327--38423553	43	5.3	43	86	0	276	30	30	18	20	1.96
38425162--38425626	37	12.6	37	98	0	894	24	32	18	24	1.97
38425622--38425944	47	6.9	47	98	0	612	29	29	8	32	1.86
38428775--38428799	12	2.1	12	100	0	50	48	8	8	36	1.62
38429428--38429467	15	2.9	13	86	13	62	50	2	0	47	1.14
38433132--38433360	126	1.8	125	85	2	325	41	26	2	29	1.67
38433402--38433434	15	2.3	15	89	5	50	36	30	0	33	1.58
38433826--38434135	41	7.6	41	91	0	476	30	29	21	19	1.97
38434177--38434314	40	3.5	38	74	11	125	20	19	22	37	1.94
38434750--38434885	50	2.7	50	80	4	132	34	22	22	20	1.97
38434782--38434962	50	3.6	50	76	4	134	36	20	24	18	1.95
38434821--38434961	25	5.7	25	84	3	133	36	21	24	17	1.95
38437383--38437414	14	2.3	14	94	0	55	87	3	0	9	0.64
38437375--38437413	20	2.0	20	100	0	78	87	2	0	10	0.65
38439213--38439275	29	2.1	30	82	8	76	55	3	3	38	1.32
38439363--38439414	21	2.5	20	81	9	59	34	3	1	59	1.27
38440657--38440702	25	1.9	24	86	8	67	60	10	0	28	1.30
38441894--38441980	25	3.6	25	82	10	92	29	3	2	64	1.22
38441911--38442033	27	4.7	26	71	16	92	34	4	3	58	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38441993--38442054	27	2.3	26	86	2	79	38	4	3	53	1.39
38442166--38442236	28	2.7	26	77	12	72	22	5	8	63	1.44
38442169--38442226	28	2.1	28	83	6	73	22	5	8	63	1.42
38443416--38443447	16	1.9	17	93	6	57	59	3	0	37	1.13
38445166--38445202	12	3.0	13	84	7	51	45	0	32	21	1.52
38452417--38452473	28	2.0	28	93	0	96	45	17	3	33	1.65
38453070--38453107	15	2.5	15	87	8	51	34	0	0	65	0.93
38454593--38454693	49	2.1	49	88	0	148	25	14	29	29	1.95
38455220--38455339	48	2.5	48	84	4	152	30	29	16	24	1.97
38457713--38457742	15	2.0	15	93	0	51	26	36	0	36	1.57
38458645--38458721	38	2.0	38	94	0	136	35	14	14	36	1.86
38459068--38459139	26	2.8	25	91	2	108	31	19	9	38	1.84
38470143--38470540	90	4.4	90	85	7	552	49	9	10	30	1.69
38470138--38470524	187	2.1	186	89	5	606	49	9	10	31	1.68
38470696--38470734	12	3.0	13	85	11	53	43	0	0	56	0.99
38470846--38470897	17	3.1	17	88	0	77	36	9	3	50	1.54
38471293--38471355	19	3.3	19	70	12	56	52	14	14	19	1.75
38472682--38472708	14	1.9	14	100	0	54	37	22	25	14	1.93
38475012--38475578	104	5.5	104	96	1	978	20	19	29	30	1.97
38478663--38478691	5	5.8	5	100	0	58	41	0	20	37	1.53
38479035--38479087	24	2.2	25	82	3	63	15	28	18	37	1.91
38479186--38479236	27	2.0	27	84	7	70	19	25	21	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38485334--38485383	22	2.3	22	86	6	66	20	30	12	38	1.88
38487616--38487659	20	2.2	20	88	8	63	15	18	6	59	1.58
38489612--38489642	12	2.6	12	94	0	53	58	3	0	38	1.15
38490598--38490623	8	3.2	8	100	0	52	34	0	23	42	1.54
38500568--38500605	19	2.0	19	94	0	67	28	15	44	10	1.80
38500916--38500949	16	2.2	15	89	5	50	55	0	0	44	0.99
38516271--38516396	25	5.0	25	79	0	117	24	20	23	30	1.98
38520689--38520743	23	2.3	24	87	6	76	69	12	7	10	1.37
38523037--38523081	19	2.3	20	84	3	56	20	20	20	40	1.92
38528782--38528876	40	2.4	40	87	0	136	24	20	7	48	1.74
38532588--38532725	69	2.0	69	100	0	276	50	8	10	30	1.66
38532895--38532936	10	4.1	10	81	12	50	19	0	4	76	0.96
38538806--38538910	45	2.4	43	81	13	108	23	4	2	68	1.22
38538835--38538912	26	3.0	24	75	15	68	24	5	2	67	1.23
38538806--38538908	46	2.2	46	84	8	129	24	4	2	67	1.23
38551877--38551904	2	14.0	2	100	0	56	50	0	0	50	1.00
38552387--38552564	27	6.6	27	83	3	205	26	15	28	29	1.96
38552388--38552543	82	1.9	81	88	3	233	26	15	28	29	1.96
38552384--38552564	82	2.2	81	83	2	229	27	15	27	29	1.96
38563543--38563588	20	2.3	20	84	0	65	36	6	0	56	1.25
38563694--38563729	10	3.6	10	92	7	56	16	2	0	80	0.83
38576247--38576367	44	2.8	45	75	3	131	33	19	17	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38577595--38577633	20	2.0	20	89	0	60	35	7	0	56	1.28
38577592--38577637	20	2.4	18	76	13	56	36	6	0	56	1.25
38577671--38577709	7	5.1	7	85	14	51	41	0	0	58	0.98
38577882--38577934	26	2.1	25	92	3	88	22	0	3	73	0.99
38582230--38582272	23	1.9	23	86	13	63	37	41	6	13	1.72
38586552--38586742	50	3.7	50	79	5	186	24	29	20	25	1.99
38589936--38589973	18	2.1	18	90	0	58	42	47	2	7	1.46
38597997--38598030	16	2.1	17	94	5	61	67	0	0	32	0.91
38602301--38602372	28	2.6	28	90	0	108	31	12	26	29	1.93
38602301--38602381	28	3.0	24	76	16	63	33	12	23	30	1.92
38603113--38603487	70	5.3	70	88	3	486	28	12	16	43	1.83
38603091--38603435	23	14.7	24	69	3	168	26	13	15	43	1.84
38609874--38609945	28	2.6	28	90	0	108	31	12	26	29	1.93
38609874--38609954	28	3.0	24	76	16	63	33	12	23	30	1.92
38610676--38610788	23	4.8	23	71	15	88	26	10	16	46	1.80
38610957--38611062	23	4.5	24	81	4	117	23	13	17	45	1.84
38613433--38613650	41	5.3	41	86	1	269	35	25	12	26	1.92
38620815--38621010	41	4.8	41	84	8	229	34	25	13	27	1.93
38620815--38621010	82	2.4	81	87	4	268	34	25	13	27	1.93
38625891--38625938	25	1.9	25	83	8	62	25	20	12	41	1.87
38637567--38637762	103	1.9	105	88	2	297	22	22	25	29	1.99
38643667--38643718	13	4.2	12	78	7	52	84	3	9	1	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38647015--38647063	23	2.2	22	82	7	55	44	0	4	51	1.20
38648592--38648671	43	1.9	42	90	7	128	48	12	10	28	1.73
38658720--38658763	23	1.9	22	82	17	54	36	25	0	38	1.56
38658809--38658896	45	2.0	45	95	0	158	32	22	18	26	1.97
38658906--38659089	101	1.8	100	86	3	253	33	24	16	26	1.96
38660406--38660479	36	2.1	36	92	0	121	24	20	13	41	1.88
38662830--38663289	69	6.8	69	75	5	260	21	17	22	38	1.93
38662962--38663298	138	2.5	131	79	6	377	21	18	22	37	1.94
38678988--38679459	262	1.8	262	81	7	591	41	17	12	27	1.86
38684132--38684200	27	2.6	27	81	4	77	55	2	7	34	1.43

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141