genome.fa.s6.2.7.7.80.10.50.1000.117.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  42799318

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  117  of  141  ( 16820 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34480999--34481109	44	2.5	44	83	2	134	33	22	17	27	1.96
34481381--34481772	89	4.4	88	80	4	326	28	23	19	28	1.99
34481531--34481817	45	6.4	45	89	2	425	29	26	16	27	1.97
34481441--34481817	89	4.2	90	85	2	411	27	24	18	28	1.98
34484060--34484100	6	7.2	6	81	10	50	0	21	2	75	0.92
34484060--34484100	11	3.6	11	80	6	55	0	21	2	75	0.92
34484060--34484101	17	2.4	18	88	7	61	0	23	2	73	0.94
34484106--34484155	9	5.7	9	79	13	59	14	2	8	76	1.10
34484115--34484150	16	2.2	16	90	0	54	13	0	8	77	0.98
34487034--34487266	51	4.6	49	81	10	233	25	17	27	30	1.97
34487034--34487272	101	2.4	100	89	4	347	25	17	27	30	1.97
34487034--34487306	101	2.7	102	84	6	342	26	15	26	31	1.96
34492204--34492236	4	8.2	4	93	0	57	75	0	3	21	0.93
34500810--34500846	19	1.9	20	88	5	58	59	0	5	35	1.20
34502631--34502739	29	3.8	26	76	19	78	69	0	1	27	1.04
34502679--34502742	8	8.1	8	80	14	71	73	1	0	25	0.92
34502685--34502731	15	3.1	15	85	14	69	72	2	0	25	0.96
34502657--34502731	31	2.3	34	88	6	111	70	1	1	26	1.03
34505112--34505149	8	4.8	8	87	9	51	73	0	15	10	1.09
34513126--34513152	11	2.5	11	100	0	54	81	7	0	11	0.87
34514615--34514746	40	3.3	40	90	0	210	25	29	18	26	1.98
34514745--34515029	149	1.9	149	100	0	570	35	24	9	29	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34516462--34516492	15	2.0	16	93	6	55	9	12	0	77	0.99
34520733--34520765	17	2.1	17	88	11	52	54	9	0	36	1.32
34521290--34521371	37	2.2	37	88	0	119	23	18	23	35	1.96
34521523--34521579	18	3.2	18	76	19	57	43	0	26	29	1.55
34528029--34528164	50	2.7	50	88	0	164	18	22	31	27	1.97
34536434--34536458	11	2.3	11	100	0	50	40	20	24	16	1.91
34546113--34546137	10	2.5	10	100	0	50	28	12	32	28	1.92
34551291--34551333	13	3.2	13	86	3	59	27	6	4	60	1.43
34553122--34553194	37	2.0	37	81	7	87	52	23	6	17	1.69
34556727--34556927	51	4.0	50	75	5	172	29	27	17	25	1.98
34556736--34556920	101	1.8	101	85	3	264	30	27	17	24	1.97
34560349--34560425	39	2.0	38	89	0	109	27	12	28	29	1.93
34565195--34565238	9	5.1	9	89	10	74	56	11	0	31	1.35
34565204--34565241	16	2.4	16	95	0	67	55	10	0	34	1.34
34565208--34565351	66	2.2	65	77	17	147	47	9	2	39	1.51
34565334--34565387	22	2.5	22	84	0	72	44	1	1	51	1.22
34565383--34565522	70	2.0	70	98	0	271	17	23	28	30	1.97
34585125--34585276	75	2.0	75	92	0	250	36	14	27	21	1.93
34599506--34599736	38	6.1	38	85	2	284	36	25	19	18	1.94
34599516--34599737	114	1.9	114	87	1	320	36	25	19	18	1.95
34600694--34600733	16	2.5	16	87	0	53	17	2	2	77	0.99
34600755--34600797	11	3.9	10	85	11	50	2	20	0	76	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34601682--34601720	20	1.9	21	84	5	53	23	15	15	46	1.83
34607562--34607604	22	2.0	21	86	4	59	20	13	6	58	1.59
34609045--34609090	22	2.1	22	100	0	92	36	4	17	41	1.69
34622909--34622937	4	7.2	4	100	0	58	24	0	0	75	0.80
34627091--34627135	21	2.1	21	84	15	58	71	0	20	8	1.12
34627091--34627147	21	2.7	20	77	20	53	71	1	19	7	1.17
34638767--34638852	45	1.9	44	97	0	154	24	15	19	39	1.90
34650146--34650177	14	2.3	14	100	0	64	75	0	0	25	0.81
34650156--34650306	68	2.2	69	92	3	259	49	8	4	37	1.54
34650288--34650349	9	7.1	9	89	7	101	54	11	0	33	1.36
34650288--34650348	25	2.3	27	86	8	90	54	11	0	34	1.37
34650424--34650463	16	2.5	16	91	0	62	42	7	2	47	1.45
34650437--34650498	22	2.7	23	85	9	83	48	1	1	48	1.21
34650437--34650498	23	2.7	24	87	7	85	48	1	1	48	1.21
34651583--34651651	27	2.4	30	81	11	83	59	0	4	36	1.17
34651897--34651955	9	6.4	9	73	15	50	25	3	1	69	1.13
34651895--34651953	27	2.2	26	82	11	75	28	3	1	66	1.18
34651923--34651965	19	2.3	18	80	4	50	25	4	2	67	1.22
34651969--34652199	90	2.6	89	80	8	243	33	8	19	38	1.82
34652635--34652773	25	5.9	23	80	13	119	51	7	2	37	1.46
34652650--34652756	25	4.4	25	82	9	134	51	8	2	37	1.47
34652997--34653033	18	2.1	19	85	10	51	51	0	8	40	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34661298--34661558	69	3.8	69	81	5	276	16	21	23	37	1.93
34663008--34663138	20	6.6	20	76	6	115	35	20	32	11	1.88
34662979--34663134	40	3.9	40	81	6	131	33	20	34	11	1.89
34663013--34663138	60	2.1	59	88	4	182	34	20	33	11	1.88
34666053--34666095	14	2.9	15	76	16	54	51	11	2	34	1.51
34666821--34666873	13	3.8	14	74	16	56	54	1	0	43	1.11
34668718--34668878	86	1.9	85	90	2	252	40	14	24	19	1.89
34669709--34669746	19	2.0	20	94	5	69	36	10	34	18	1.85
34677375--34677552	27	6.6	27	83	3	205	26	15	28	29	1.96
34677376--34677531	82	1.9	81	88	3	233	26	15	28	29	1.96
34677372--34677552	82	2.2	81	83	2	229	27	15	27	29	1.96
34685438--34685615	27	6.6	27	83	3	205	26	15	28	29	1.96
34685439--34685594	82	1.9	81	88	3	233	26	15	28	29	1.96
34685435--34685615	82	2.2	81	83	2	229	27	15	27	29	1.96
34706404--34706456	26	2.0	26	96	0	97	18	18	33	28	1.95
34706363--34706494	67	2.0	68	82	13	166	24	18	28	29	1.98
34706433--34706659	43	5.4	42	76	11	214	22	14	25	37	1.92
34706430--34706667	85	2.8	84	88	0	341	22	15	25	36	1.94
34712364--34712437	26	2.8	26	95	0	130	17	18	33	29	1.94
34712417--34712569	42	3.6	42	80	11	159	23	16	24	35	1.94
34712416--34712574	84	1.9	84	88	0	237	23	15	24	36	1.94
34712509--34712638	64	2.0	64	90	0	206	23	20	20	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34712574--34712714	43	3.3	43	76	11	148	21	19	24	34	1.97
34719729--34719781	25	2.1	25	92	0	88	7	41	9	39	1.66
34731934--34731984	12	4.2	12	78	9	50	56	3	21	17	1.57
34731935--34731973	20	2.0	20	90	10	62	56	5	23	15	1.59
34733577--34733761	40	4.7	40	80	9	209	24	28	22	24	2.00
34741570--34741754	40	4.7	40	82	6	216	25	28	22	24	1.99
34741572--34741752	79	2.3	80	81	7	208	24	28	22	24	1.99
34745658--34745711	20	2.7	20	82	0	63	31	5	11	51	1.60
34745889--34745915	14	1.9	14	100	0	54	29	14	22	33	1.94
34746378--34746450	29	2.5	29	90	0	119	32	9	10	46	1.71
34748450--34748498	21	2.3	21	83	10	64	75	2	4	18	1.06
34759617--34759641	13	1.9	13	100	0	50	16	32	16	36	1.90
34763463--34763564	50	2.0	50	100	0	204	46	17	7	28	1.76
34773976--34774032	21	2.7	21	83	8	62	31	5	28	35	1.79
34794839--34795101	40	6.6	40	87	3	309	26	28	20	23	1.99
34796615--34796756	50	2.8	50	86	3	205	26	22	29	21	1.99
34803142--34803189	15	3.3	14	80	8	60	4	18	0	77	0.93
34803142--34803200	21	2.8	21	87	5	75	6	22	0	71	1.09
34805388--34805429	16	2.6	16	84	0	57	52	7	26	14	1.67
34806282--34806323	16	2.6	16	84	0	57	52	7	26	14	1.67
34811755--34811822	21	3.2	21	73	8	66	22	19	19	39	1.92
34812324--34812357	16	2.1	16	94	0	59	20	0	14	64	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34840660--34840693	16	2.2	15	89	5	50	55	2	0	41	1.15
34840761--34840816	29	1.9	29	82	7	69	50	14	7	28	1.69
34849266--34849632	27	13.6	27	83	0	403	18	16	22	41	1.89
34852376--34852579	80	2.5	80	89	2	320	17	18	22	42	1.89
34852377--34852579	27	7.6	27	84	3	257	17	18	21	42	1.89
34855534--34855581	12	3.9	12	86	5	60	68	12	6	12	1.37
34855534--34855581	13	3.8	13	89	8	64	68	12	6	12	1.37
34855622--34855672	14	3.7	14	87	12	79	66	0	9	23	1.21
34868431--34868477	22	2.1	22	96	0	85	23	40	4	31	1.74
34896567--34896685	50	2.4	50	82	2	132	25	28	20	26	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141