genome.fa.s6.2.7.7.80.10.50.1000.111.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  42799318

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  111  of  141  ( 16820 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32409790--32409824	13	2.7	13	100	0	70	20	5	14	60	1.54
32412951--32412986	17	2.1	17	89	0	54	55	13	8	22	1.65
32433647--32433713	31	2.1	33	83	5	84	56	4	19	19	1.58
32438418--32438615	50	3.8	50	81	6	209	28	20	26	23	1.99
32438429--32438615	100	1.8	104	82	6	247	28	20	27	24	1.99
32444690--32444716	7	3.9	7	100	0	54	59	14	11	14	1.62
32457191--32457237	10	4.6	10	82	12	60	31	0	6	61	1.21
32467704--32467755	27	1.9	27	84	0	68	65	1	25	7	1.30
32472488--32472515	14	2.0	14	100	0	56	35	14	14	35	1.86
32476467--32476512	22	2.1	22	88	4	67	30	13	32	23	1.93
32481627--32481757	43	3.0	43	85	2	165	32	26	19	21	1.97
32487767--32488610	422	2.0	422	98	0	1636	30	21	11	37	1.88
32489116--32489175	31	1.9	31	93	0	102	20	33	21	25	1.97
32494330--32494359	13	2.3	13	94	0	51	36	10	3	50	1.53
32494508--32494671	87	1.9	90	82	8	212	46	2	4	46	1.37
32495178--32495482	72	4.3	71	80	2	297	46	13	5	34	1.67
32495179--32495482	143	2.1	144	79	4	337	46	13	5	34	1.66
32497565--32497613	22	2.3	23	82	13	68	63	12	2	22	1.39
32497745--32497847	25	4.0	25	80	2	107	23	9	46	20	1.80
32497745--32497847	50	2.0	52	84	3	138	23	9	46	20	1.80
32497858--32497977	35	3.5	32	76	11	98	35	2	32	29	1.71
32498019--32498113	40	2.3	41	87	1	138	14	21	18	45	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32499353--32499417	30	2.2	30	83	5	80	30	7	24	36	1.84
32499708--32499815	41	2.6	42	85	2	137	30	13	23	32	1.93
32509533--32509587	26	2.1	26	86	10	76	52	0	32	14	1.42
32509999--32510040	21	2.0	21	90	0	66	50	2	14	33	1.56
32510003--32510048	21	2.2	21	84	0	56	54	2	8	34	1.43
32510710--32510761	22	2.4	22	96	0	95	32	21	15	30	1.94
32511937--32511979	12	3.5	12	77	3	50	65	0	25	9	1.22
32519056--32519240	40	4.6	40	86	0	244	32	18	30	17	1.94
32519160--32519224	20	3.2	20	65	16	53	32	18	35	13	1.90
32525674--32525883	104	2.0	104	98	0	402	27	22	12	36	1.91
32529121--32529206	20	4.3	20	71	0	55	38	16	22	23	1.93
32529121--32529239	60	2.0	60	83	0	148	38	17	22	21	1.93
32531092--32531431	51	6.7	49	79	5	311	31	24	14	30	1.94
32531243--32531377	26	5.3	26	61	25	72	32	27	10	29	1.90
32531198--32531431	102	2.3	102	89	0	351	31	26	13	29	1.94
32531092--32531438	153	2.3	152	82	4	396	31	24	14	30	1.94
32531904--32531965	30	2.1	30	84	6	81	27	24	6	41	1.79
32533527--32533580	20	2.7	20	88	0	81	25	29	1	42	1.66
32538415--32538710	27	11.0	27	80	6	275	43	19	18	17	1.88
32543301--32543748	27	16.6	27	83	3	485	42	19	19	18	1.90
32543934--32544004	26	2.7	26	84	0	88	16	23	21	38	1.93
32545253--32545300	18	2.6	19	80	6	62	56	2	4	37	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32545670--32545756	27	3.1	27	75	15	70	58	2	2	36	1.23
32547725--32547820	42	2.3	42	85	1	122	28	20	23	27	1.99
32547744--32547847	42	2.5	39	75	13	100	26	22	23	27	1.99
32568443--32568619	32	5.5	32	72	12	121	40	21	17	20	1.91
32568443--32568568	64	2.0	64	84	3	164	41	21	16	20	1.90
32576315--32576396	39	2.1	39	97	0	155	21	24	31	21	1.98
32580305--32580420	60	1.9	59	96	1	214	32	18	19	28	1.95
32582918--32583095	27	6.6	27	83	3	196	26	15	28	29	1.96
32582919--32583069	82	1.9	81	88	4	232	27	16	27	28	1.97
32588671--32588698	9	3.1	9	100	0	56	10	0	75	14	1.06
32593160--32593393	77	3.1	77	83	9	284	53	9	7	29	1.60
32593588--32593660	33	2.2	32	85	2	101	26	8	49	16	1.73
32595687--32596017	104	3.3	102	73	15	323	54	16	0	28	1.48
32595904--32595961	28	2.0	29	80	9	66	58	20	0	20	1.39
32595825--32596022	91	2.1	95	82	10	241	55	17	1	26	1.49
32595990--32596299	72	4.3	72	97	0	566	54	15	0	29	1.47
32596040--32596230	41	5.1	41	62	23	134	54	15	1	28	1.47
32595990--32596341	144	2.4	144	90	3	431	54	15	1	28	1.48
32596311--32596434	60	2.1	60	96	0	230	54	11	0	34	1.37
32596310--32596401	27	3.2	27	66	16	76	53	15	0	31	1.42
32597300--32597490	6	31.0	6	70	16	115	50	13	17	19	1.78
32597321--32597490	31	5.3	31	77	12	139	50	12	17	19	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32597323--32597469	37	4.1	37	81	10	180	51	12	16	19	1.77
32597300--32597380	43	1.9	42	85	7	110	53	13	16	17	1.74
32597321--32597476	68	2.3	68	90	0	240	50	12	17	19	1.78
32597440--32597488	25	2.0	25	91	0	80	48	14	16	20	1.80
32598023--32598319	27	11.0	27	87	0	405	24	21	20	34	1.97
32598481--32598738	54	4.8	54	88	1	356	41	7	20	30	1.80
32598513--32598738	27	8.4	27	89	0	335	40	7	21	30	1.80
32598743--32598842	26	3.8	26	75	16	80	29	11	18	42	1.84
32598331--32598893	27	21.1	27	77	9	235	35	8	20	35	1.84
32598795--32598888	49	1.9	49	89	4	145	28	8	21	41	1.82
32599059--32599093	17	2.0	18	94	5	63	17	34	28	20	1.95
32599063--32599105	19	2.4	17	84	7	50	13	39	25	20	1.90
32605602--32605633	17	1.9	16	93	6	55	34	12	21	31	1.91
32606845--32606903	10	5.8	10	78	4	64	18	27	15	38	1.91
32607049--32607086	20	1.9	21	84	10	53	34	0	7	57	1.28
32610714--32610981	40	6.7	40	95	0	455	21	26	20	30	1.98
32617363--32617652	40	7.3	40	93	1	404	26	28	21	23	1.99
32617361--32617705	80	4.3	79	86	4	383	26	28	20	24	1.99
32617361--32617705	120	2.9	120	85	3	367	26	28	20	24	1.99
32617637--32617714	40	1.9	41	82	10	97	26	28	20	24	1.99
32625385--32625607	40	5.6	39	85	3	241	26	27	20	24	1.99
32625385--32625607	120	1.9	119	81	6	272	26	27	20	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32636342--32636383	17	2.5	17	88	3	68	57	21	11	9	1.63
32638190--32638238	6	8.0	6	77	4	53	4	18	4	73	1.15
32638190--32638234	18	2.4	18	89	10	65	4	20	4	71	1.21
32640729--32640799	6	11.8	6	73	5	54	73	4	15	7	1.21
32640728--32640802	12	6.2	12	73	11	73	70	4	16	9	1.28
32643936--32644005	27	2.6	26	95	2	95	31	28	12	27	1.93
32643936--32644033	28	3.5	28	90	2	135	31	28	13	26	1.94
32644484--32644513	2	15.0	2	92	0	51	50	3	0	46	1.18
32646742--32646778	17	2.2	17	90	0	56	24	29	8	37	1.84
32650984--32651035	23	2.3	22	75	21	54	9	23	1	65	1.32
32657789--32658091	40	7.6	40	89	2	405	27	27	20	24	1.99
32665771--32666198	40	10.7	40	95	0	712	21	27	20	30	1.98
32669204--32669259	30	1.9	28	82	13	69	60	10	14	14	1.58
32671192--32671230	18	2.2	17	82	13	51	5	17	2	74	1.12
32679058--32679083	13	2.0	13	100	0	52	69	0	0	30	0.89
32696992--32697037	24	1.9	24	100	0	92	60	0	8	30	1.26
32697322--32697366	20	2.2	21	84	7	58	66	13	2	17	1.34
32697504--32697571	25	2.7	25	88	0	100	22	11	48	17	1.79
32701823--32701974	27	5.6	27	93	3	241	26	13	28	30	1.94
32701823--32701974	55	2.8	55	94	0	259	26	13	28	30	1.94
32709311--32709376	32	2.1	32	88	5	98	36	19	0	43	1.51
32710943--32711053	40	2.8	40	80	5	143	33	12	28	25	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32712733--32713127	200	2.0	201	92	1	659	29	14	19	36	1.91
32714592--32714819	115	2.0	115	97	1	431	34	8	23	33	1.86
32716126--32716452	164	2.0	164	97	0	618	34	17	22	25	1.95
32716715--32716776	30	2.1	30	96	0	115	19	17	25	37	1.94
32716937--32716991	28	2.0	28	92	0	92	29	25	16	29	1.97
32716676--32717109	228	1.9	230	87	2	640	29	14	18	38	1.90
32718316--32718708	200	2.0	200	90	1	626	30	13	18	38	1.89
32719603--32719992	200	1.9	201	94	1	685	28	13	20	37	1.90
32720847--32721816	200	4.8	200	98	0	1814	29	12	19	39	1.88
32722679--32723046	200	1.8	200	92	0	628	28	10	20	39	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141