genome.fa.s6.2.7.7.80.10.50.1000.15.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  42799318

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  15  of  141  ( 16820 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4516262--4516493	41	5.7	41	88	1	331	23	28	20	27	1.99
4526649--4526682	14	2.4	14	90	0	50	5	11	0	82	0.83
4526610--4526671	26	2.4	26	88	0	97	3	20	0	75	0.94
4529634--4529771	69	2.0	69	92	0	231	24	17	12	45	1.83
4532056--4532132	28	2.9	27	78	7	77	48	1	2	48	1.23
4534203--4534298	49	2.0	49	83	4	122	26	23	13	36	1.92
4534559--4534932	193	1.9	193	90	1	590	39	24	7	28	1.82
4535891--4536018	14	9.1	14	78	3	114	32	21	13	32	1.92
4536871--4536900	15	2.1	15	93	6	53	33	0	0	66	0.92
4555131--4555161	15	2.1	15	93	0	53	58	6	6	29	1.48
4555397--4555443	24	2.1	22	75	20	53	61	4	8	25	1.43
4555428--4555477	26	1.9	26	87	0	73	56	2	2	40	1.22
4562953--4563010	30	1.9	30	89	6	91	41	5	22	31	1.76
4563352--4563581	50	4.5	50	82	3	244	26	20	30	22	1.98
4563352--4563594	100	2.4	101	83	4	290	26	20	30	23	1.98
4567751--4567796	15	3.1	15	100	0	92	32	6	19	41	1.77
4568750--4568864	44	2.6	44	84	0	149	30	23	19	26	1.98
4568885--4568987	51	2.0	51	80	0	116	26	25	19	29	1.99
4568949--4569023	36	2.1	36	89	0	114	29	21	21	28	1.98
4568885--4569766	123	6.7	136	73	11	691	28	24	16	30	1.97
4568899--4569074	87	2.0	87	79	0	190	28	22	19	29	1.98
4568895--4569766	261	3.3	261	88	0	1287	28	24	16	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4569255--4569402	51	2.9	51	70	4	127	25	28	17	28	1.98
4569330--4569469	72	1.9	72	82	0	172	26	27	12	32	1.93
4569396--4569510	51	2.3	51	84	0	149	29	23	14	32	1.94
4569475--4569546	36	2.0	36	86	0	99	29	20	19	30	1.97
4569438--4569597	87	1.8	87	83	0	212	29	23	15	32	1.95
4569627--4569669	21	2.1	21	86	4	61	23	30	6	39	1.81
4569646--4569756	51	2.2	52	83	1	143	31	27	13	27	1.94
4569576--4569720	72	2.0	72	82	1	175	26	26	14	32	1.95
4571090--4571128	5	7.8	5	83	11	53	0	17	0	82	0.68
4571090--4571129	11	3.9	11	78	15	50	0	17	0	82	0.67
4571095--4571148	21	2.6	20	83	13	65	5	16	0	77	0.94
4572985--4573018	4	8.5	4	93	0	50	70	0	0	29	0.87
4574877--4574919	12	3.5	12	81	6	50	37	2	0	60	1.10
4582211--4582250	22	2.0	21	85	14	57	52	5	37	5	1.45
4583482--4583508	6	4.5	6	100	0	54	0	14	0	85	0.61
4585610--4585654	22	2.1	21	83	4	54	44	0	33	22	1.53
4585639--4585676	19	2.0	19	94	0	67	31	0	39	28	1.57
4585850--4585959	41	2.7	41	87	6	145	31	19	17	31	1.95
4587128--4587194	9	7.4	9	81	6	82	41	20	8	28	1.83
4588848--4588885	8	4.8	8	100	0	76	65	0	10	23	1.23
4588856--4588892	16	2.5	14	91	8	56	67	0	8	24	1.17
4588847--4588901	24	2.3	24	84	9	78	67	0	7	25	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4599969--4599997	15	1.9	15	100	0	58	79	0	0	20	0.74
4600448--4600871	106	4.0	106	98	0	803	37	15	10	36	1.82
4606535--4606673	52	2.7	51	87	9	189	48	0	10	40	1.38
4610584--4611919	664	2.0	661	85	2	1768	32	11	19	37	1.87
4612333--4612388	27	2.1	27	93	0	94	39	14	17	28	1.89
4612328--4612400	27	2.8	26	83	4	92	36	13	19	30	1.90
4612342--4612400	26	2.2	26	87	3	82	35	11	20	32	1.89
4616940--4616985	13	3.5	13	82	8	58	34	2	0	63	1.07
4625548--4625601	15	3.6	14	80	9	54	75	7	1	14	1.09
4625567--4625668	13	7.4	12	71	22	60	80	2	8	7	1.00
4627945--4628039	44	2.1	44	80	1	109	27	20	27	25	1.99
4627956--4629191	218	5.7	218	90	0	1875	28	19	25	27	1.99
4627966--4629168	44	27.6	44	66	11	318	28	19	24	27	1.99
4630604--4630672	24	2.9	24	82	4	86	37	8	5	47	1.58
4639840--4639899	24	2.5	22	84	10	66	40	11	5	43	1.63
4643536--4643581	23	2.0	23	100	0	92	39	26	4	30	1.75
4647175--4647272	50	2.0	50	89	0	151	32	13	27	26	1.93
4647408--4647626	60	3.6	60	85	1	269	37	10	26	26	1.88
4647452--4647548	29	3.3	29	64	16	72	35	10	27	26	1.89
4647419--4647575	31	5.2	31	65	14	103	35	11	26	26	1.91
4647394--4647695	121	2.5	121	82	3	342	35	11	26	27	1.90
4647407--4647687	60	4.6	62	82	5	247	36	10	26	25	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4663117--4663373	40	6.5	40	82	5	211	25	20	28	25	1.99
4663192--4663338	40	3.7	40	93	0	224	23	20	28	27	1.99
4663117--4663373	79	3.3	78	79	7	243	25	20	28	25	1.99
4671117--4671326	40	5.3	39	89	4	242	25	21	27	25	1.99
4671064--4671326	120	2.2	120	82	4	309	25	21	27	25	1.99
4671065--4671361	80	3.7	80	81	6	230	26	21	27	24	1.99
4682826--4682855	15	2.0	15	93	0	51	13	10	0	76	1.01
4689652--4689706	27	2.0	27	96	0	101	23	7	20	49	1.74
4693271--4693303	14	2.4	14	90	10	50	63	9	0	27	1.24
4693794--4693858	30	2.2	30	83	5	78	47	0	3	49	1.17
4693814--4693842	13	2.3	13	94	5	51	44	0	3	51	1.18
4696472--4696496	3	8.3	3	100	0	50	36	64	0	0	0.94
4702117--4702159	21	2.0	21	95	0	77	41	18	6	32	1.77
4708505--4708620	50	2.3	50	78	0	115	20	25	25	28	1.99
4711804--4711923	44	2.7	43	83	5	141	43	16	23	16	1.87
4711773--4711917	66	2.2	66	78	0	155	43	18	22	15	1.87
4711773--4711940	22	7.6	22	73	4	106	44	17	23	15	1.86
4715362--4715408	11	4.3	11	81	5	51	40	10	0	48	1.38
4720268--4720316	5	9.8	5	80	8	55	4	12	0	83	0.77
4721868--4721933	33	2.0	33	96	0	123	34	19	15	30	1.93
4723874--4723926	27	2.0	27	84	0	70	26	16	20	35	1.94
4723874--4723933	27	2.2	27	81	0	66	26	16	20	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4728975--4729001	12	2.2	12	100	0	54	33	29	0	37	1.58
4734701--4734739	17	2.3	17	83	12	53	79	0	17	2	0.84
4737496--4737530	12	2.9	12	82	0	52	20	34	0	45	1.51
4739065--4739103	17	2.2	18	90	4	62	79	0	17	2	0.84
4742837--4742878	19	2.3	19	87	4	59	40	7	19	33	1.78
4744578--4744613	12	2.8	13	87	8	56	13	0	33	52	1.41
4748839--4748871	17	1.9	17	88	11	50	12	3	0	84	0.72
4759005--4759046	17	2.5	17	88	0	57	42	38	16	2	1.61
4771270--4771295	13	2.0	13	100	0	52	38	15	7	38	1.76
4778492--4779055	132	4.3	132	92	0	939	25	23	20	31	1.98
4778542--4778990	44	10.2	44	63	10	155	25	22	19	31	1.98
4791498--4791570	30	2.4	30	95	0	128	9	30	42	17	1.81
4793200--4793308	41	2.7	41	91	2	175	18	21	30	30	1.97
4793650--4793727	22	3.6	21	79	8	77	26	1	24	47	1.60
4793674--4793762	7	12.6	7	73	2	61	22	1	29	47	1.59
4793630--4793763	21	6.3	21	73	8	74	25	1	27	45	1.62
4793777--4793840	21	3.0	21	76	19	69	21	0	42	35	1.54
4793948--4793986	17	2.4	17	95	4	71	53	0	0	46	1.00
4794173--4794213	21	1.9	22	85	5	57	21	0	39	39	1.54
4794194--4794222	8	3.8	8	90	9	51	13	0	48	37	1.43
4794542--4794609	36	1.9	35	82	8	84	60	5	0	33	1.21
4794623--4794707	39	2.2	39	86	0	116	38	18	21	21	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4795458--4795539	38	2.2	38	86	4	112	20	15	8	54	1.67
4799697--4800053	43	8.3	43	89	0	509	22	18	31	27	1.97
4800123--4800167	22	2.1	21	87	4	63	42	26	17	13	1.86
4801393--4801457	24	2.5	26	74	18	64	41	6	10	41	1.65
4809942--4810080	57	2.3	60	86	9	196	21	25	21	31	1.98
4816063--4816087	12	2.1	12	100	0	50	52	0	0	48	1.00
4824615--4824665	11	4.6	11	92	0	84	19	23	7	49	1.74
4824601--4824665	33	2.0	33	81	6	78	23	23	6	47	1.73
4824671--4824714	12	3.8	12	81	3	54	40	0	0	59	0.98
4825816--4825840	7	3.6	7	100	0	50	28	0	12	60	1.32

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141