genome.fa.s6.2.7.7.80.10.50.1000.110.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  42799318

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  110  of  141  ( 16820 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31904224--31904500	40	6.9	40	91	0	446	23	28	21	26	1.99
31920117--31920291	19	9.0	19	63	11	59	36	15	29	18	1.92
31920118--31920355	78	3.1	77	79	4	280	33	15	31	19	1.93
31920100--31920355	39	6.5	39	81	0	242	33	14	31	19	1.93
31948582--31948607	10	2.6	10	100	0	52	0	11	0	88	0.52
31952890--31952947	30	1.9	30	86	6	82	44	5	17	32	1.70
31953237--31953740	51	9.7	50	71	12	188	28	15	26	30	1.96
31953233--31953580	102	3.3	102	86	7	457	27	15	27	29	1.96
31953328--31953546	110	2.0	110	99	0	429	26	15	28	29	1.96
31953445--31953734	49	5.7	49	79	9	287	29	15	25	29	1.96
31960669--31960725	30	1.9	30	85	7	80	43	7	17	31	1.76
31961011--31961353	102	3.4	102	79	7	335	27	16	25	30	1.97
31961011--31961347	51	6.7	51	75	9	248	27	16	26	29	1.97
31963927--31964198	136	2.0	138	93	1	467	39	8	6	45	1.62
31966457--31966497	20	2.0	20	95	0	73	7	26	36	29	1.83
31967590--31967656	25	2.7	25	92	0	107	38	25	14	20	1.91
31981559--31981760	39	5.2	39	87	1	289	32	23	12	31	1.92
31981559--31981760	77	2.6	78	85	1	289	32	23	12	31	1.92
31993441--31993669	56	4.1	56	73	11	204	39	16	23	20	1.92
31993556--31993670	59	1.9	60	80	5	135	40	16	21	20	1.91
31993451--31993673	107	2.1	104	86	3	302	38	17	21	22	1.93
31994101--31994215	60	2.0	58	86	10	164	33	18	26	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31995902--31995936	18	1.9	18	94	0	61	40	5	17	37	1.73
32000814--32000852	19	2.1	19	100	0	78	25	20	10	43	1.83
32004311--32004376	21	3.1	21	95	0	114	25	27	30	16	1.97
32013061--32013193	37	3.6	37	82	8	157	20	14	31	33	1.92
32020544--32020622	25	3.2	25	87	0	122	11	31	32	24	1.90
32025591--32026101	257	2.0	257	86	1	711	34	18	25	22	1.96
32030064--32030180	49	2.4	49	85	0	144	23	17	19	39	1.92
32040245--32040312	26	2.6	26	90	0	100	27	26	23	22	1.99
32044345--32044431	29	3.0	28	76	12	79	55	4	5	34	1.44
32044613--32044652	18	2.2	18	86	0	53	27	0	0	72	0.85
32048356--32048443	38	2.3	38	78	0	104	18	27	30	23	1.97
32051500--32051527	2	14.0	2	100	0	56	50	0	50	0	1.00
32052400--32052428	14	2.1	14	100	0	58	58	6	0	34	1.25
32055246--32055306	26	2.3	27	83	8	72	31	18	31	19	1.96
32071853--32072075	51	4.4	51	80	4	211	30	26	16	26	1.96
32071989--32072021	14	2.5	13	90	9	50	39	27	9	24	1.85
32083981--32084055	25	2.9	26	78	7	82	42	9	13	34	1.76
32086174--32086270	51	1.9	51	89	0	149	29	6	43	20	1.76
32095769--32095823	25	2.2	26	83	3	67	34	0	14	50	1.43
32104654--32104692	20	2.0	20	90	10	62	15	23	5	56	1.59
32104948--32105071	50	2.5	50	83	0	149	20	29	23	26	1.98
32107347--32107396	25	2.0	25	100	0	100	44	4	16	36	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32109344--32109384	20	2.0	20	90	0	64	17	12	9	60	1.57
32123141--32123188	24	2.0	24	100	0	96	16	16	16	50	1.79
32124018--32124322	160	1.9	160	89	5	468	40	12	9	38	1.74
32124820--32124859	16	2.5	16	83	0	53	10	0	40	50	1.36
32124881--32125411	125	4.3	125	93	0	879	28	18	22	30	1.97
32139408--32139483	38	2.0	38	94	0	134	30	14	25	30	1.95
32139771--32139821	26	2.0	26	88	0	75	35	11	25	27	1.91
32145283--32145338	20	2.9	19	76	10	60	69	5	17	7	1.31
32146176--32146636	44	10.6	44	73	9	218	31	23	16	27	1.96
32146121--32146635	217	2.4	218	81	4	587	30	24	17	28	1.97
32146429--32146636	88	2.4	87	86	2	299	32	23	15	28	1.95
32146697--32146855	87	1.9	83	81	12	189	25	23	22	29	1.99
32146145--32146804	44	15.2	44	69	11	186	29	23	18	28	1.98
32146853--32147161	131	2.4	131	93	0	539	22	24	22	30	1.99
32147168--32147607	87	5.1	87	88	1	648	24	24	22	28	2.00
32149738--32149835	46	2.1	47	83	12	123	10	13	6	70	1.33
32149731--32149844	54	2.1	54	84	9	144	9	13	5	71	1.28
32149757--32149844	45	1.9	45	84	11	117	12	11	6	69	1.36
32154958--32155151	47	4.1	49	84	6	256	28	29	8	32	1.87
32154958--32155151	96	2.0	94	86	5	266	28	29	8	32	1.87
32158212--32158846	317	2.0	317	94	0	1110	32	15	22	29	1.95
32169053--32169167	61	1.9	61	94	0	203	31	16	16	35	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32169733--32170086	47	7.5	47	95	0	609	32	8	30	29	1.86
32171008--32171038	9	3.4	9	90	0	53	51	9	6	32	1.60
32171252--32171309	30	1.9	30	85	0	80	18	36	0	44	1.50
32175534--32175581	20	2.4	20	89	0	69	33	25	12	29	1.92
32180239--32180348	56	2.0	56	96	0	202	23	6	30	40	1.79
32183409--32183498	27	3.3	27	73	11	85	44	11	20	24	1.83
32183457--32183549	26	3.5	26	74	10	80	41	13	21	22	1.88
32185076--32185138	26	2.4	26	77	15	67	41	14	7	36	1.75
32198275--32198315	6	6.5	6	86	10	55	26	2	0	70	0.99
32198275--32198315	20	2.1	19	90	4	64	26	2	0	70	0.99
32198275--32198312	14	2.9	13	88	11	60	28	2	0	68	1.03
32200959--32200996	15	2.4	16	86	4	51	44	0	0	55	0.99
32207209--32208065	427	2.0	427	93	0	1473	28	19	12	39	1.89
32208942--32209006	32	2.0	32	93	0	112	41	13	18	26	1.88
32214137--32214896	44	16.6	44	66	18	191	28	19	18	32	1.96
32214146--32214554	94	4.4	95	81	4	454	28	19	20	32	1.96
32214137--32214593	94	4.9	94	78	4	395	28	19	19	32	1.96
32214549--32214749	94	2.2	93	80	4	235	28	18	17	35	1.94
32214443--32214718	138	2.0	137	81	0	318	28	18	19	32	1.96
32220743--32220994	138	1.8	138	80	5	303	21	20	25	32	1.97
32233175--32233507	47	7.1	47	96	0	594	28	30	9	31	1.88
32240442--32240631	31	6.1	31	78	6	163	21	27	12	39	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32255575--32255618	20	2.1	21	84	12	56	45	4	0	50	1.22
32257290--32257366	15	4.6	17	72	18	63	23	10	0	66	1.22
32257299--32257360	31	2.0	32	90	3	99	25	8	0	66	1.19
32259057--32259539	241	2.0	241	94	0	849	32	17	21	28	1.96
32268271--32268327	23	2.5	23	81	13	57	66	1	0	31	1.02
32269224--32269289	32	2.1	32	94	0	114	37	6	9	46	1.60
32275727--32275908	100	1.8	100	91	0	301	26	20	15	36	1.93
32279454--32279545	44	2.1	44	85	4	123	48	4	32	14	1.63
32279518--32280437	3	306.7	3	99	0	1813	66	0	33	0	0.94
32280991--32281018	9	3.1	9	100	0	56	46	10	10	32	1.73
32288740--32288838	27	3.7	27	73	10	76	36	20	27	16	1.93
32290897--32290926	11	2.7	11	100	0	60	33	0	10	56	1.32
32293617--32293681	19	3.4	19	97	2	121	27	15	15	41	1.87
32297387--32297565	90	2.0	90	97	0	340	26	10	29	34	1.90
32299280--32299317	19	2.0	19	85	10	51	21	42	0	36	1.53
32307405--32307582	27	6.6	27	83	3	205	26	15	28	29	1.96
32307406--32307561	82	1.9	81	88	3	233	26	15	28	29	1.96
32307402--32307582	82	2.2	81	83	2	229	27	15	27	29	1.96
32307487--32307593	27	3.9	27	85	1	70	26	14	28	30	1.95
32315048--32315244	56	3.8	52	78	5	152	23	28	20	26	1.99
32329959--32330190	56	4.1	56	98	0	446	45	9	21	22	1.81
32339670--32339852	79	2.3	81	83	7	223	24	22	27	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32339671--32339854	40	4.6	40	82	9	207	24	22	28	24	2.00
32339723--32339887	79	2.1	79	83	6	201	26	21	27	24	1.99
32344794--32345041	137	1.8	138	86	2	365	44	6	7	41	1.57
32348098--32348251	28	5.5	28	97	0	274	33	28	11	25	1.91
32348726--32348752	12	2.2	12	100	0	54	40	0	7	51	1.30
32356466--32356563	28	3.5	28	90	2	135	31	28	13	26	1.94
32376964--32377148	54	3.4	54	86	0	271	42	21	16	19	1.89
32376964--32377148	27	6.9	27	86	0	235	42	21	16	19	1.89
32386815--32386856	15	2.7	16	77	7	50	57	2	0	40	1.12
32387674--32387869	50	3.8	50	89	4	275	22	31	19	26	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141