genome.fa.s6.2.7.7.80.10.50.1000.63.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  42799318

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  63  of  141  ( 16820 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18664389--18664682	105	2.8	106	86	3	423	35	17	17	30	1.93
18665428--18665458	16	1.9	16	93	0	53	64	3	0	32	1.09
18665923--18665947	12	2.1	12	100	0	50	92	0	8	0	0.40
18668358--18668534	64	2.8	64	87	6	229	32	7	17	42	1.78
18668644--18668762	41	2.9	41	94	0	211	29	20	29	21	1.98
18670055--18670225	92	1.9	92	87	1	254	42	13	12	31	1.81
18670638--18670706	33	2.1	33	100	0	138	40	26	7	26	1.81
18673694--18673739	22	2.1	22	84	15	60	43	19	6	30	1.76
18677110--18677140	15	2.1	15	100	0	62	41	6	19	32	1.77
18679282--18679359	36	2.1	36	88	2	111	43	6	10	39	1.64
18679291--18679363	36	2.0	36	97	0	137	42	6	8	42	1.61
18680592--18680637	18	2.5	19	86	13	62	32	30	0	36	1.58
18684291--18684483	50	3.7	50	86	4	242	25	22	29	22	1.99
18684347--18684522	50	3.6	48	82	3	156	28	23	26	21	1.99
18694788--18694816	3	9.7	3	100	0	58	34	0	0	65	0.93
18697231--18697285	23	2.4	24	84	9	78	47	0	0	52	1.00
18703730--18703790	23	2.5	23	89	7	86	49	0	0	50	1.00
18703754--18703793	10	3.7	10	81	18	53	45	0	0	55	0.99
18703746--18703787	14	3.4	13	78	21	54	50	0	0	50	1.00
18703746--18703791	23	2.0	23	100	0	92	47	0	0	52	1.00
18706939--18707011	31	2.4	31	86	2	94	50	17	9	21	1.74
18709505--18709537	17	1.9	17	93	0	57	27	6	3	63	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18709510--18709545	17	2.1	17	89	5	54	27	8	5	58	1.50
18709676--18709704	13	2.1	14	93	6	51	75	0	6	17	1.01
18718187--18718218	13	2.4	14	85	15	50	21	3	0	75	0.95
18718384--18718438	22	2.5	21	82	5	56	25	45	9	20	1.80
18719551--18719592	17	2.4	18	76	19	52	73	2	0	23	0.94
18719555--18719590	16	2.2	17	90	5	56	72	2	0	25	0.98
18720171--18720205	15	2.4	15	90	4	54	48	0	8	42	1.33
18723524--18723648	43	2.9	43	79	0	133	20	17	28	32	1.96
18726599--18726658	25	2.4	25	88	0	84	36	5	21	36	1.76
18733385--18733633	32	8.0	32	75	5	172	34	9	14	41	1.78
18733469--18733612	64	2.2	64	91	0	234	34	12	15	37	1.86
18733772--18733857	41	2.1	41	97	0	163	29	16	23	31	1.96
18733772--18733870	41	2.4	41	93	0	153	27	17	25	30	1.97
18734654--18734686	17	2.0	17	88	5	50	33	0	21	45	1.52
18742042--18742174	40	3.5	40	75	10	141	33	21	24	21	1.97
18742003--18742174	75	2.3	75	88	2	247	31	21	25	21	1.98
18742004--18742145	35	3.9	35	76	12	117	32	23	25	19	1.97
18742003--18742220	75	2.9	76	79	4	199	32	22	24	21	1.98
18742549--18742628	35	2.3	35	97	0	151	37	11	32	18	1.87
18745331--18745393	18	3.6	18	72	10	58	52	7	3	36	1.47
18745477--18745546	29	2.4	27	79	13	70	71	1	4	22	1.12
18745628--18745659	15	2.1	16	94	5	57	84	3	0	12	0.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18745747--18745783	18	2.1	18	94	0	65	70	2	5	21	1.20
18747222--18747278	26	2.3	24	78	6	60	22	1	17	57	1.49
18748049--18748091	23	1.9	22	81	13	52	51	9	0	39	1.34
18748578--18748627	19	2.6	20	84	12	61	34	2	8	56	1.40
18755775--18755835	30	2.0	31	90	6	97	31	4	3	60	1.34
18755832--18755890	26	2.3	26	80	5	68	44	3	1	50	1.28
18755857--18755908	23	2.3	23	83	12	63	36	0	7	55	1.29
18758741--18758803	23	2.8	22	75	13	58	1	12	28	57	1.45
18759020--18759064	21	2.1	21	87	0	63	22	8	15	53	1.69
18759416--18759529	44	2.6	44	77	2	122	25	25	21	28	1.99
18759688--18760105	87	4.8	87	92	0	703	25	23	22	28	1.99
18759910--18760046	43	3.2	43	64	17	102	24	22	24	29	1.99
18761333--18761370	7	5.3	7	82	17	51	13	13	0	73	1.09
18761333--18761375	22	1.9	22	90	4	68	11	18	0	69	1.17
18761333--18761364	15	2.1	16	94	5	57	12	12	0	75	1.06
18761708--18761820	35	3.3	35	73	14	135	11	13	7	68	1.39
18761750--18761883	12	10.8	12	70	18	53	8	10	7	73	1.26
18761696--18761846	13	11.2	12	66	20	50	9	13	6	70	1.32
18761696--18761887	68	2.9	68	92	5	304	9	11	6	72	1.28
18761850--18761883	12	2.8	12	95	0	59	11	2	5	79	1.02
18761790--18761893	32	3.3	32	76	9	99	9	7	8	74	1.24
18763232--18763324	39	2.5	37	78	7	89	27	27	22	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18763493--18763538	23	2.0	24	82	4	58	32	26	0	41	1.56
18763678--18763738	3	20.3	3	93	0	104	63	1	1	32	1.13
18763978--18764024	22	2.0	23	84	12	60	29	27	0	42	1.56
18764422--18764461	17	2.3	17	91	4	62	5	12	7	75	1.18
18764477--18764508	16	1.9	17	93	6	57	53	3	0	43	1.16
18764473--18764534	25	2.5	25	79	7	72	50	3	0	46	1.17
18764631--18764681	14	3.4	14	82	12	66	56	1	0	41	1.10
18769440--18769859	208	2.0	209	99	0	824	52	8	15	24	1.70
18770379--18770419	13	3.1	13	82	6	55	73	4	19	2	1.13
18778474--18778516	21	2.0	21	95	0	77	27	27	20	23	1.99
18781934--18782029	50	1.9	51	84	2	131	26	23	20	29	1.99
18782207--18782339	58	2.3	58	85	2	178	20	27	26	26	1.99
18784946--18784994	24	2.0	25	84	4	64	32	22	24	20	1.98
18790402--18790459	13	4.5	13	91	0	98	39	27	10	22	1.86
18790622--18790705	26	3.3	26	67	9	82	23	1	13	61	1.38
18790629--18790735	51	2.1	51	100	0	214	23	1	14	60	1.43
18790646--18790727	27	3.1	27	68	10	89	25	1	12	60	1.39
18796306--18796383	39	2.0	39	100	0	156	33	20	12	33	1.91
18797132--18797173	16	2.8	16	78	7	52	38	21	0	40	1.53
18802383--18802422	14	2.9	14	84	0	53	32	7	17	42	1.77
18802406--18802445	20	2.0	20	90	0	62	27	10	12	50	1.72
18802391--18802457	34	1.9	35	90	3	109	31	8	13	46	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18802385--18802461	14	5.0	15	71	20	52	32	9	15	42	1.78
18817315--18817390	31	2.5	31	77	0	80	32	10	10	46	1.73
18820010--18820037	14	2.0	14	100	0	56	57	0	0	42	0.99
18822857--18822884	12	2.3	12	100	0	56	21	35	42	0	1.53
18823373--18823417	3	15.0	3	100	0	90	33	0	0	66	0.92
18825404--18825447	19	2.3	20	84	7	56	27	20	11	40	1.86
18827987--18828015	8	3.6	8	100	0	58	72	13	0	13	1.13
18829602--18829630	13	2.2	13	100	0	58	27	17	27	27	1.97
18831422--18831513	47	2.0	47	84	0	121	21	22	14	41	1.89
18834035--18834094	32	1.9	32	83	10	79	20	8	3	68	1.30
18834129--18834181	26	2.0	26	100	0	106	41	7	28	22	1.81
18834780--18834854	37	2.0	37	89	0	114	44	13	5	37	1.66
18834984--18835057	38	1.9	39	94	2	132	18	2	25	52	1.59
18835043--18835092	17	2.8	17	90	6	73	16	0	42	42	1.47
18835102--18835138	18	2.1	18	94	0	65	24	13	16	45	1.83
18847000--18847261	39	6.7	40	87	7	337	25	22	27	24	2.00
18849492--18849828	69	4.9	69	85	1	453	40	16	22	19	1.91
18849492--18849829	35	9.8	35	84	3	389	40	16	22	19	1.91
18853811--18853984	35	5.1	35	92	3	282	41	18	21	17	1.90
18854220--18854292	29	2.5	29	70	16	69	38	10	5	45	1.63
18854258--18854295	14	2.8	13	88	7	58	36	13	5	44	1.66
18856570--18856603	16	2.1	16	88	0	50	20	14	20	44	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18859107--18859131	9	2.8	9	100	0	50	24	36	20	20	1.95
18866998--18867055	24	2.4	24	97	0	107	34	12	24	29	1.91
18867341--18867758	46	9.0	46	79	8	432	27	18	25	29	1.98
18867490--18867666	90	2.0	89	84	1	228	24	19	26	29	1.99
18867341--18867751	141	2.9	135	82	6	439	27	18	25	29	1.98
18867341--18867776	97	4.6	98	78	10	434	27	17	25	29	1.98
18880950--18881026	14	5.0	15	70	20	52	41	14	9	35	1.77
18885817--18885918	45	2.3	44	84	6	134	41	17	18	22	1.90
18886121--18886207	40	2.2	40	83	4	104	41	19	6	32	1.78
18886837--18886897	24	2.5	23	80	15	61	49	4	0	45	1.23

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141