genome.fa.s6.2.7.7.80.10.50.1000.130.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr3
Parameters: 2 7 7 80 10 50 1000
Length:  42799318

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   

This is table  130  of  141  ( 16820 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39072598--39072637	18	2.3	18	91	4	64	35	2	0	62	1.09
39072666--39072721	20	2.9	18	82	12	60	28	0	1	69	0.98
39072666--39072722	19	2.9	20	82	10	64	28	0	1	70	0.98
39072645--39072711	28	2.4	28	90	7	100	32	0	1	65	1.02
39089307--39089354	25	1.9	25	95	0	87	31	16	27	25	1.97
39089713--39089756	17	2.6	17	100	0	88	18	18	18	45	1.86
39092977--39093015	14	2.7	15	84	8	62	71	2	0	25	0.98
39094651--39094822	50	3.4	50	83	3	211	27	22	29	20	1.98
39094663--39094843	100	1.8	100	82	0	236	25	20	30	22	1.99
39094796--39094958	81	2.0	81	100	0	326	34	18	20	26	1.96
39099532--39099589	30	1.9	30	100	0	116	34	20	10	34	1.87
39101597--39101629	17	1.9	17	100	0	66	63	0	0	36	0.95
39101835--39101866	16	2.0	16	100	0	64	37	0	0	62	0.95
39104109--39104159	18	2.7	19	81	9	59	1	17	1	78	0.94
39106541--39106627	33	2.6	33	83	0	111	28	11	18	41	1.85
39108132--39108212	37	2.2	37	82	10	94	53	1	8	37	1.40
39109344--39109456	44	2.6	45	81	5	133	30	21	17	30	1.96
39109560--39110859	44	30.2	44	76	12	471	29	26	18	26	1.98
39109815--39110872	88	12.4	88	78	9	1025	29	26	17	26	1.98
39110035--39110103	34	2.0	35	91	2	113	27	24	23	24	2.00
39109819--39110815	254	3.9	253	81	4	1051	29	26	17	26	1.98
39110547--39110611	34	1.9	34	87	0	94	30	23	23	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39112154--39112191	11	3.5	11	78	7	51	0	0	18	81	0.69
39117328--39117371	23	2.0	22	90	4	70	56	2	6	34	1.38
39118071--39118115	22	2.0	22	86	4	63	37	20	4	37	1.73
39118094--39118149	21	2.8	19	82	10	76	35	17	8	37	1.82
39118105--39118148	21	2.1	21	100	0	88	38	13	9	38	1.77
39118828--39119113	88	3.2	89	70	7	251	25	26	17	30	1.97
39118793--39119213	176	2.4	176	85	5	557	27	24	18	29	1.98
39118762--39119037	132	2.1	130	79	7	315	27	24	18	28	1.98
39118925--39119157	44	5.3	44	73	9	170	26	25	16	31	1.96
39119148--39119263	44	2.6	44	83	2	144	32	22	19	25	1.97
39119026--39119543	254	2.0	254	90	1	806	28	23	19	28	1.98
39119390--39122870	44	81.7	43	69	13	504	28	24	18	28	1.98
39119482--39119580	34	2.9	34	95	0	180	29	25	23	22	1.99
39119550--39124451	88	57.1	87	65	15	500	28	24	18	28	1.98
39119136--39120079	420	2.2	423	86	5	1274	28	25	18	27	1.98
39119902--39119966	34	1.9	34	96	0	121	29	26	23	21	1.99
39119853--39120095	78	3.0	81	83	8	296	28	26	18	26	1.98
39119447--39120393	386	2.5	384	89	3	1421	28	25	18	27	1.98
39119814--39120050	122	1.9	122	87	5	345	28	26	18	26	1.98
39119893--39120691	298	2.7	288	80	9	911	28	25	18	28	1.98
39119667--39121017	684	2.0	684	92	0	2229	28	25	18	28	1.98
39119447--39120917	386	3.8	380	81	7	1090	28	25	18	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39120586--39120650	34	1.9	34	93	0	112	30	26	21	21	1.98
39120542--39120779	78	2.9	81	86	7	313	30	26	17	25	1.97
39120518--39122018	122	11.8	122	67	14	441	28	23	18	28	1.98
39120024--39120767	298	2.5	298	83	2	762	28	25	17	28	1.98
39119412--39122061	254	10.4	255	69	13	741	28	24	18	28	1.98
39120205--39122313	640	3.3	636	84	5	2360	28	24	18	28	1.98
39119661--39121419	684	2.6	683	85	4	2084	28	24	18	28	1.98
39120918--39121717	386	2.1	376	85	4	1061	29	23	19	28	1.98
39121866--39121930	34	1.9	34	93	0	112	29	27	21	21	1.99
39121304--39122015	298	2.4	298	79	5	880	28	24	18	28	1.98
39121843--39122405	298	1.9	289	82	9	643	30	23	19	26	1.98
39120511--39122458	640	3.0	638	87	3	2617	28	23	19	28	1.98
39121654--39122357	342	2.1	335	82	5	822	29	24	18	27	1.98
39121908--39122458	298	1.8	302	85	5	772	29	23	19	27	1.98
39122332--39122585	127	2.0	127	100	0	508	24	23	20	31	1.98
39122677--39122741	34	1.9	34	90	0	103	27	23	26	23	2.00
39122628--39122868	78	2.9	82	84	9	312	29	27	18	25	1.98
39122597--39122824	122	1.9	122	90	3	370	28	26	20	24	1.99
39122459--39123168	386	1.8	386	89	1	1127	29	24	18	28	1.98
39122996--39123098	44	2.3	44	88	4	154	37	22	16	23	1.93
39122799--39123352	298	1.9	298	88	2	853	29	23	17	29	1.97
39123017--39123585	254	2.2	254	85	2	793	29	23	16	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39122755--39123422	298	2.2	297	77	7	803	29	23	17	29	1.97
39123501--39124469	44	22.3	44	68	15	184	28	23	18	28	1.98
39123351--39123758	176	2.3	176	88	2	579	28	23	17	30	1.97
39123695--39124467	44	17.8	44	71	10	299	28	24	18	28	1.98
39123351--39124301	220	4.3	220	76	6	982	28	23	18	29	1.98
39124225--39124467	78	3.0	81	83	8	305	28	26	18	25	1.98
39124204--39124426	122	1.8	122	92	1	376	30	25	20	24	1.99
39125644--39125672	15	1.9	15	100	0	58	27	27	13	31	1.94
39134287--39134373	44	2.0	44	86	0	120	33	25	14	26	1.95
39134427--39134750	44	7.1	44	74	12	147	26	21	20	31	1.98
39134282--39134802	188	2.8	188	86	2	706	29	20	19	30	1.97
39134388--39134709	94	3.4	93	71	15	291	27	20	21	31	1.98
39138152--39138284	43	3.1	43	87	1	169	29	33	15	21	1.94
39142433--39142755	107	3.0	107	88	0	461	28	12	11	47	1.76
39142538--39143275	257	2.8	258	91	2	1196	27	12	12	46	1.78
39142810--39143000	105	1.8	106	93	1	330	28	10	11	49	1.73
39143055--39143479	108	3.9	108	94	0	719	28	12	12	47	1.76
39143578--39143602	6	4.2	6	100	0	50	16	0	0	84	0.63
39144187--39144220	14	2.4	14	90	9	52	32	44	0	23	1.54
39144197--39144238	15	2.9	15	85	3	50	35	45	0	19	1.50
39144254--39144286	15	2.3	15	89	5	50	42	30	0	27	1.56
39144472--39144522	15	3.5	15	76	12	61	33	45	0	21	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39144852--39145387	114	4.7	113	84	4	673	26	24	22	26	2.00
39150961--39150991	16	1.9	16	93	0	53	38	22	9	29	1.86
39166546--39166585	19	2.1	19	86	9	55	67	0	0	32	0.91
39179334--39179437	42	2.5	42	93	0	172	29	16	25	28	1.97
39179334--39179459	42	3.0	42	88	5	159	30	15	24	29	1.96
39180346--39180402	24	2.5	21	76	17	60	24	3	26	45	1.69
39186656--39186733	29	2.7	28	84	11	104	25	14	30	29	1.94
39186686--39187013	174	1.9	174	96	0	602	30	14	24	31	1.94
39190756--39190817	20	3.1	20	73	0	61	35	19	32	12	1.90
39192663--39192831	37	4.6	37	84	0	203	28	16	19	35	1.94
39195820--39196014	50	3.9	50	90	1	302	25	22	31	20	1.98
39196444--39196694	50	5.0	50	93	0	430	25	21	31	21	1.98
39196444--39196694	100	2.5	100	98	0	484	25	21	31	21	1.98
39197355--39197387	17	2.0	17	88	5	50	36	0	12	51	1.39
39199780--39199822	18	2.5	17	85	10	61	27	2	4	65	1.25
39200043--39200085	21	2.1	20	83	12	52	13	6	4	74	1.19
39200202--39200236	15	2.3	15	95	0	61	22	0	11	65	1.24
39212102--39212950	44	19.5	43	70	14	342	30	20	22	27	1.98
39212095--39213086	217	4.6	217	91	0	1581	30	20	21	27	1.98
39212836--39212951	45	2.6	44	75	14	121	31	19	20	27	1.97
39214448--39214536	16	5.7	15	72	15	74	29	2	4	64	1.25
39214454--39214534	30	2.6	31	82	7	92	30	2	4	61	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39214500--39214536	18	2.1	18	94	0	65	32	2	5	59	1.34
39214454--39214550	30	3.2	29	72	16	79	31	3	5	59	1.35
39214735--39214777	21	2.1	20	83	12	52	13	6	4	74	1.19
39214894--39214928	15	2.3	15	100	0	70	20	0	14	65	1.26
39216427--39216513	37	2.3	39	80	7	99	21	4	6	66	1.34
39229735--39229937	82	2.5	82	95	0	370	50	16	6	26	1.70
39230013--39230466	158	2.9	154	81	5	527	32	13	16	37	1.87
39230549--39230590	22	2.0	22	81	13	52	7	19	7	66	1.39
39232668--39232693	6	4.3	6	100	0	52	15	69	0	15	1.20
39233147--39235114	984	2.0	984	100	0	3936	42	14	13	29	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141